AT1G59460

BEST Arabidopsis thaliana protein match is B-block binding subunit of TFIIIC (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004044
Physical Location & Seq
Reverse (-)
21850153 .. 21850936
784 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59460.1

Sequence Viewer

Length: 600 bp
ATGTTTCGTGTGAAGCTTCTACACTGTTTCCTTTGGGACTATTTTAGTTCTTTGCCTGGCTGGGACAGTGCCTCTTCTTCTATACACCATCACATATCTAAGAATTTGTTTTCACTTAAAGACGCTTTTAGAGCCATGCCACTCCAACTATTTTTACAAGTTGTTGGATCTACTCAGAAAGCTGATGATATCATGAAGAAATACAAACAGGTTATGCGTCTTTCTGAGCTTCCTAGCGAAGAGTATAAACTTCTAATGGATACTCGTGTGATTGGGATATTATCGATGCTTATCAATATTTTACGCCGGTTAAAGTTGATTCAGATGGTAAGTGATAGACTCAGACGTGATAAGATTGAGAAGTATGCTAACTTAACACATGCAATGGAGCTTAAGCCTTATATAGAGGAACCTGTGTTTGTTGCTGCTAAATTCGATGTCACGTCTCTTGATTTTCGTCCACGTATTCGGCATGACTTTATTCTATCGAATAGAGATGCTGTTGATGAATATTGGCTAACTCTAGAATATTGCTATGCTGCTTCTGATCACGAAGCTGCTAAGCAAGCATTTCCAGGATCTGTTTCTCAAGAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B-block_TFIIIC

Protein Analysis

199

Amino Acids

23.28

Weight (kDa)

8.46

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7647 PF24658 30 - 199 5e-70 Domain of unknown function (DUF7647)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 175, 586
AcsI RAATTY 2 cut(s) 103, 431
AflII CTTAAG 1 cut(s) 392
AjiI CACGTC 2 cut(s) 347, 444
AjnI CCWGG 2 cut(s) 55, 574
AluBI AGCT 5 cut(s) 16, 182, 229, 391, 557
AluI AGCT 5 cut(s) 16, 182, 229, 391, 557
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 2 cut(s) 175, 586
AlwNI CAGNNNCTG 1 cut(s) 581
ApeKI GCWGC 3 cut(s) 425, 539, 557
ApoI RAATTY 2 cut(s) 103, 431
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BauI CACGAG 1 cut(s) 264
BbvI GCAGC 3 cut(s) 412, 526, 544
BccI CCATC 2 cut(s) 96, 319
BciT130I CCWGG 2 cut(s) 57, 576
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 2 cut(s) 234, 524
BfrI CTTAAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 3 cut(s) 426, 540, 558
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 3 cut(s) 427, 541, 559
Bme1390I CCNGG 2 cut(s) 57, 576
BmgBI CACGTC 2 cut(s) 347, 444
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 2 cut(s) 57, 576
BmsI GCATC 2 cut(s) 276, 487
Bpu1102I GCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 573
Bsa29I ATCGAT 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 2 cut(s) 57, 576
BseCI ATCGAT 1 cut(s) 284
BseJI GATNNNNATC 1 cut(s) 290
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 188, 216, 355
BseXI GCAGC 3 cut(s) 412, 526, 544
BseYI CCCAGC 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 50, 77
BsmAI GTCTC 1 cut(s) 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 50, 77
Bsp143I GATC 3 cut(s) 167, 547, 578
Bsp1720I GCTNAGC 1 cut(s) 561
BspCNI CTCAG 3 cut(s) 187, 217, 354
BspDI ATCGAT 1 cut(s) 284
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 411
BspPI GGATC 2 cut(s) 175, 586
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssMI GATC 3 cut(s) 167, 547, 578
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 57, 576
Bst4CI ACNGT 2 cut(s) 26, 68
Bst6I CTCTTC 2 cut(s) 79, 234
BstAFI CTTAAG 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 5 cut(s) 99, 174, 225, 341, 561
BstKTI GATC 3 cut(s) 170, 550, 581
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 3 cut(s) 167, 547, 578
BstMWI GCNNNNNNNGC 2 cut(s) 131, 566
BstNI CCWGG 2 cut(s) 57, 576
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 55, 574
BstV1I GCAGC 3 cut(s) 412, 526, 544
BstX2I RGATCY 2 cut(s) 167, 578
BstYI RGATCY 2 cut(s) 167, 578
Bsu15I ATCGAT 1 cut(s) 284
BsuI GTATCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 284
BtrI CACGTC 2 cut(s) 347, 444
BtsIMutI CAGTG 2 cut(s) 22, 73
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 284
CseI GACGC 2 cut(s) 131, 206
CviAII CATG 4 cut(s) 136, 193, 380, 473
CviJI RGCY 9 cut(s) 16, 60, 134, 182, 229, 391, 397, 517, 557
CviKI_1 RGCY 9 cut(s) 16, 60, 134, 182, 229, 391, 397, 517, 557
DdeI CTNAG 5 cut(s) 99, 174, 225, 341, 561
DpnI GATC 3 cut(s) 169, 549, 580
DpnII GATC 3 cut(s) 167, 547, 578
Eam1104I CTCTTC 2 cut(s) 79, 234
EarI CTCTTC 2 cut(s) 79, 234
Eco32I GATATC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 55, 574
EcoRV GATATC 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 4 cut(s) 139, 196, 383, 476
FaqI GGGAC 2 cut(s) 50, 77
FatI CATG 4 cut(s) 135, 192, 379, 472
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 426, 540, 558
Fsp4HI GCNGC 3 cut(s) 426, 540, 558
FspBI CTAG 2 cut(s) 234, 524
GluI GCNGC 3 cut(s) 426, 540, 558
GsaI CCCAGC 1 cut(s) 64
HapII CCGG 1 cut(s) 307
HgaI GACGC 2 cut(s) 131, 206
Hin1II CATG 4 cut(s) 139, 196, 383, 476
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 319, 339
HpaII CCGG 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 5 cut(s) 177, 226, 324, 344, 547
Hpy188III TCNNGA 5 cut(s) 193, 449, 524, 551, 590
Hpy8I GTNNAC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 26, 68
HpyCH4IV ACGT 3 cut(s) 346, 443, 463
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 566
HpyF3I CTNAG 5 cut(s) 99, 174, 225, 341, 561
HpySE526I ACGT 3 cut(s) 346, 443, 463
Hsp92II CATG 4 cut(s) 139, 196, 383, 476
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 167, 547, 578
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 8 cut(s) 42, 46, 69, 194, 320, 426, 561, 588
Lsp1109I GCAGC 3 cut(s) 412, 526, 544
LweI GCATC 2 cut(s) 276, 487
MaeI CTAG 2 cut(s) 234, 524
MaeII ACGT 3 cut(s) 346, 443, 463
MaeIII GTNAC 1 cut(s) 439
MalI GATC 3 cut(s) 169, 549, 580
MboI GATC 3 cut(s) 167, 547, 578
MboII GAAGA 4 cut(s) 66, 69, 208, 251
MflI RGATCY 2 cut(s) 167, 578
MluCI AATT 2 cut(s) 103, 431
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 2 cut(s) 145, 169
MnlI CCTC 3 cut(s) 82, 400, 586
MseI TTAA 4 cut(s) 117, 311, 374, 393
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 57, 576
MvaI CCWGG 2 cut(s) 57, 576
MwoI GCNNNNNNNGC 2 cut(s) 131, 566
NdeII GATC 3 cut(s) 167, 547, 578
NlaIII CATG 4 cut(s) 139, 196, 383, 476
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 383
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 3 cut(s) 427, 541, 559
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Ppu21I YACGTR 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 55, 574
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 2 cut(s) 55, 574
PspN4I GGNNCC 1 cut(s) 411
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 167, 578
SaqAI TTAA 4 cut(s) 117, 311, 374, 393
SatI GCNGC 3 cut(s) 426, 540, 558
Sau3AI GATC 3 cut(s) 167, 547, 578
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 2 cut(s) 57, 576
SfaNI GCATC 2 cut(s) 276, 487
SmlI CTYRAG 2 cut(s) 392, 588
SmoI CTYRAG 2 cut(s) 392, 588
Sse9I AATT 2 cut(s) 103, 431
SspI AATATT 3 cut(s) 298, 512, 530
SspMI CTAG 2 cut(s) 234, 524
StyD4I CCNGG 2 cut(s) 55, 574
TaaI ACNGT 2 cut(s) 26, 68
TaiI ACGT 3 cut(s) 349, 446, 466
TaqI TCGA 3 cut(s) 284, 435, 488
TasI AATT 2 cut(s) 103, 431
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 4 cut(s) 117, 311, 374, 393
Tru9I TTAA 4 cut(s) 117, 311, 374, 393
TscAI CASTG 2 cut(s) 29, 73
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 3 cut(s) 425, 539, 557
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 209, 522
TspRI CASTG 2 cut(s) 29, 73
Vha464I CTTAAG 1 cut(s) 392
XapI RAATTY 2 cut(s) 103, 431
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 383
XspI CTAG 2 cut(s) 234, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.