AT1G17450

BEST Arabidopsis thaliana protein match is B-block binding subunit of TFIIIC (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004044
Physical Location & Seq
Reverse (-)
5988280 .. 5997033
8754 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17450.2

Sequence Viewer

Length: 5262 bp
ATGGATTCGATTGTATGCACAGCACTGGAGGAAATCTGTTGTCAAGGAAATACAGGGATCCCACTCGTTTCTCTCTGGTCAAGGCTCTCTCCTCCTCCTCTTTCTCCTTCCGTCAAGGCTCATGTCTGGAGAAATCTTCTCGCCGTCCCTCAGCTCCAGTTCAAGGCGAAAAACACTGTGTACGAACCATCTGATGCTTCGATTCAACAGCTGGAAGAGGCACTAAGACTCGATTTGAGGATCTTCGCGAATGAGAAGCTCCGAGGTAACTTCGTTGGCTTGTACGATGCTCAGTCCAATAACACGACTATTTCCGCTATTCAGCGTCGCGTTCTCGAGCGGCTTGCTGTTGCTCGAGCCAATGGAGTTGCACAAAATCTGCTTGCTAAAGAGTTTGGTATCGAAGGTAGAAACTTCTTCTATATTGTGAAGCACCTTGAGTCTCGAGGTTTAGTTGTTAAACAACCAGCGATAGTGAGAACAAAGGAAGTTGATGGTGAAGGGGATTCCAAAACCACCTCATGCATTAGCACCAATATGATATATTTAAGTCGTTACGCCAAGCCTTTGGGTTCCCAGCAGAGATTTGAGATTTGCAAAGAGGACTCTTTATTGGAGCAAGAGGCTACTCCCGCCGGAGATAGTTTACAATCAGAAAGTACAAAAGAGGATACGCTCATTAAAGATTTTCTACCAGCAATGCAGGCAATTTGTGATAAGCTTGAAGAAACTAATGAGAAGGTTCTAGTCGTCTCGGACATTAAGCAAGACCTCGGTTATCTGGGATCACATTCAAGGCATAGAGCTTGGAGAAGTGTTTGTCGCCGGTTGACAGATTCTCATGTAGTAGAGGAGTTTGATGCTGTGGTGAACAATAAGGTTGAACGATGCCTCCGTTTGTTAAAAAGATTTTCAGCAAAAGATTTTAACTACTCTGGGAAAAAGCAACTCCTAAAATTCGGAAGGAGTATTCAAAAAACAGAACAAACTTTGGAGCTTCCAATAGATAATCAAATTTATGATATGGTTGATGCTGAAGGATCTAAAGGCTTGGCTGTGATGGAGGCAGAAAGTCACAAGAAGACTAGAGTATTTCGAGTTTGGACTTCTGGTAATGCTGGGTCCGAATGTTCTGATCGGTTTCCTGAGAAAGCTGAAAATCGTAGCTGGGAAAACAATGTACCGATTAATGATTTTGGCACACCTCATGATACTGGTGGATTGACTCAGACCTCCATCGAACACAGTATTGCAATTTCTGATGCTGACTTTGCTACACCTGCAAGGTTAACTGATTCTGAAAACAATTCAGGAGTTCTCCACTTTGCTACACCTGGAAGGCTAACTGATTCTGAAAGCAATTCAGGAGTTCCGGATTGTTCCCCATCTGATGCCAAAAGAAGACATGTCCTTACACGCCGTAACTTACAAGAATCATTCCATGAGATCTGTGATAAGGTTGTTGATACTGCAATGGGGTCCCCTGATTTGGCTTTGTCAGAAATGAACCATCTCGCTCCACCGAAGCCAGCTAAACCAAAGGTGCACCAACCTCAGCCGATTACTGTTGAAAACTCTCGAAGAGAGCGGAGAATACTTGAGCGCTTAAATGAGGAGAAGTTTGTTGTAAGAGCCGAGCTACATAAATGGCTTCTCAGTCTTGAGAAGGACAGGAGCTCCAAAGTGGATAGGAAAACCATTGACAGAATTCTAAATAGGCTTCAAGAAGAAGGACTCTGCAATTGCATGAACATTAGTGTCCCAAATGTTACTAATTGTGGTCGCAATCGTAGCTCTGTGGTAGTTTTTCATCCATCTGTTCAAAGTTTGACTCGAGACATAGTTGGTGAAATTCATGATAGGATTAGGTCTTTTGAACTGGGACTCCGTGGCCAGAACTTATCAAAGAGGAAAAGCAACGAGCTAATTCCAATATTGAATGACATTCAGAGAGGTCAAACGAATGTGGATTTGGATGCGCGTGCTAGCAAATCAGGAGCCATGCGAGCCAATGGGTTTGTGCTTGCAAAGATGAAATCTGACAATTTGTTTGCACTTGAAGATGCTTTTAAAGCCATGCCACTCGAACTGTTTTTACAAGTTGTTGGATCTACTCAGAAAGCTGATGATATGATGAAGAAATGTAAACAGGTTATGCGTCTTTCTGAGCTTCCTGGTGAAGAGTATAAGCTTCTAATGGACACTCTTGCAACTGGGAGATTATCGATGCTTATTGATATTTTACGTCGCTTGAAGATGGTAAGTAGTAGACTCAGACGCGATGAAATTGAGGAGAAGTATGCTAATCTAACACATGCAATGGAGCTTAAGCCTTATATAGAGGAACCTGTGTTTGTTGCTGCTACATCCAATGTTATGTCTCTTGATTTTCGTCCACGTATTCGGCATGACTTTATTCTATCAAATAGAGATGCTGTTGATGAATATTGGCTAACTTTAGAATATTGCTATGCTGCTGCCGATCACAGAGCTGCTAAGCTAGCATTTCCGGGATCTGTTGTTCAAGAGCGTGCTAAGCTCTTAAAGCGCATTGCAATCGATGAGAAGGAAAAGCTCTCATTCAAAGAGTGTGAGAAGATTGCTAAGGATCTGAACCTGACCTTAGAGCAGCTTGATTTCGGTTTTAAAGCTTTCTCATATCTGGTTATGCATGTCTATCATGCGAAGCATGGAAGACGCGTGAAATCCAAATCAAAAGATAAACATTTAGCTATAGATAATAGCTCTTCTTCATCTTCTGGGAAAAGAAAAAGAGGAACTCTCGTAAAGACTACAGGAGAAGGTGTCAGATCCATAATAGTAGACGGAGAAAAGGTTCTGAATTCCGATGCCATTGATGCCTCAAATAGTGAGAAGTTTCTAAATTCATTAGAAGAGCATCAGGAGCATAATCTACAAGAAAATTCAGAGATAAGGGATCTTACTGAAGATGAAGGCCAGTGCTCTTCTATTATCAACCAGTACGCAAGTTCAAAGACCACATCAACTCCTTCACAAAGATTTTCGTGGACAGATGAGGCAGACAGGAAACTGTTGAGTCAATATGTTAGACATCGTGCAGCTCTTGGGGCGAAATTTCATGGAGTGATGTGGGCTTCAGTTCCAGAACTGCCTGCCCCTCCTTTGGCTTGCAAGCGACGGGTTCAAATATTGATGAAGAATGATAAATTTCGGAAGGCGATCATGAGTCTTTGCAATCTGCTCAGTGAGCGTTATGCAAGACATCTGGAGACGAAACAGAAGTGTTTACCCGAGAGCAACAAGTCACATGTTCTTGTTAGATATTTATCCCCGGCAATTGGCGGAACGGATTCTGGTTCTGTTGAGCAAGGTAAAGATATATGTTTTGATGAAGAAAAATGGGATGACTTCAATGAAAAGAGTATAAGTCAAGCCTTTAATGATGTTCTTGAGCTCAAGAAGATGGCTAAACTGGTGGCCCCTAAACGGACAAAAAGTTCTCGGGAATGGTCAAACAGAGATATAATTGATGAGGGGAGTGAAATGGTTCCACCTGCGATCCACTCAGAGGACATTCAAAATGTGTCTGTGGATCAAGTTAAAGATACATCTCGACGATCTGGTCATTATCGTCTTCATCAAACTGTCAGGCCTTTAGATGAAAAGGACAACGATAGTATACAAGTACGGAAATCTCTGGCAGTTTCTACTGCTGCAGAACTGTTAAAGCTTGTCTTTCTGAGCATGCCTACTGCACCTGGTATGCCAAATTTGCTGGAAGATACCTTACGACGTTATTCAGAGCGAGACCTCTTCACAGCCTATAGCTACCTCCGAGACAAAAAATTCCTGGTTGGTGGAAGTGGTGGACAGCCATTTGTGCTTTCTCAAAACTTCTTGCACAGTATTTCAAAGTCTCCATTCCCAGTTAATACTGGGACAAGAGCAGCCAAGTTCTCCAGTTGGCTTTTCGAACATGAAAGAGACCTTATGGCTGGGGGTGTCACTCTTACTTCGGATTTGCAATGTGGTGATATTTTAAATTTCTTTTCATTGGTTTCTTCTGGTGAACTCTCTATATCTGTATCCTTGCCTGAAGAAGGTGTTGGAGAGCCTGGAGATCGAAGAGGTTTGAAACGTAGAGCTGATGACATAGAAGAATCTGAAGCTGAGAGTTCTAAGAAATTGAAGCTACTAGGCGAAGGTGAAATCAACTTCCGAAAGGAAAAGGGTTTCCCTGGTATAGCAGTATCTGTTCGTCGTGCAACTATACCAACAGCTAATGCAATAGAGTTGTTTAAGGATGATGACTCTCGCACTGGTGAATTTCATTTGAAGTGGGGAGAAGCGAATAGTGGCTGTGATTCTGATGACATGAAAGAACTTTTCAACTCTACAGATTCTACTGTCATACCAAGCAGTCTAGGTGATTCTCCCTGGCAAGCGATGGCCAGTTTTACTAGTAGCATTATGTCCGAATCAACAGATGAGGAAGTTAGTTTATTCAGTCCCAGGGTTTTTGAAACCGTTTCCAATGCCCTTCAGAAGGCTGGTGACCAAGGTCTGAGCATTGAAGAAGTCCACAGTCTTATTGATATCCCAAGCCAAGAAACTTGTGACTGCATTGTAGATGTACTTCAAACATTTGGGGTAGCTTTGAAGGTAAATGGCTATAATAATTTCCGTGTTGTCCATTCCTTCTACCGATCAAAGTACTTCTTGACATTGGAGGAAGATGGAACTTCCCAAAAAAGTCAACAGTCTCTACCAGTGAACTACCTAGAGAGAGCTGTTGGGGAACATAGGTCCAAAGATATCATTGCTAGCAGCTACAGTACTTCACAGGACATGCGAGAGCATGTCGCTGGGAATAGCGTTCACAAGGTTACAATTCTTAACCTTCCTGAAACGGCTCAAACGAGCGGTTTGCATGAAGCATCTATCAAAGCTCCATCTGTTACTTTTGGAACGGGTATTGAAGGTGAAACAAAGGAATCAACTTCTGAAAAGTCACCTGTGCCTATATATCCATGGGTAAACGCAGATGGGTCAATAAATAAAATTGTCTTTGATGGACTAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGGACGAGATAATAAACCTAATGGACATACTAAATCCTCAGAAAGCTTCTGGAGTTGATGACACTCGACGGCTATATGAAAGTGAGGGAAATGGTGCAAACCAAATTCACCGGTCCTCCGTCTCTGTTAGCCGGTCTCGTCTCAACAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B-block_TFIIIC

Protein Analysis

1753

Amino Acids

196.31

Weight (kDa)

6.5

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_GTF3C1_N PF23704 1 - 95 1.2e-31 General transcription factor 3C polypeptide 1, winged-helix domain
B-block_TFIIIC PF04182 106 - 188 3.1e-19 B-block binding subunit of TFIIIC
DUF7599 PF24538 228 - 310 1.1e-34 Domain of unknown function (DUF7599)
DUF7646 PF24657 322 - 403 2.1e-36 Domain of unknown function (DUF7646)
WHD_GTF3C1 PF24101 549 - 656 2.9e-39 GTF3C1, extended winged-helix domain
DUF7647 PF24658 736 - 912 7.9e-80 Domain of unknown function (DUF7647)
DUF7645 PF24655 913 - 972 4.9e-27 Domain of unknown function (DUF7645)
DUF6581 PF20222 1231 - 1426 7.6e-06 Family of unknown function (DUF6581)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1288, 3544
AasI GACNNNNNNGTC 1 cut(s) 3603
Acc36I ACCTGC 2 cut(s) 1288, 3544
Acc65I GGTACC 1 cut(s) 5078
AccB1I GGYRCC 1 cut(s) 5078
AccBSI CCGCTC 3 cut(s) 340, 1588, 4905
AccI GTMKAC 4 cut(s) 2269, 2823, 3661, 5101
AccII CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
AccIII TCCGGA 1 cut(s) 1372
AciI CCGC 6 cut(s) 315, 340, 633, 1588, 3324, 4905
AcoI YGGCCR 2 cut(s) 1891, 4431
AcuI CTGAAG 6 cut(s) 1056, 2967, 3102, 4098, 4167, 4508
AfeI AGCGCT 1 cut(s) 1604
AfiI CCNNNNNNNGG 8 cut(s) 163, 1489, 3145, 3320, 3468, 3550, 4082, 4528
AflII CTTAAG 1 cut(s) 2327
AflIII ACRYGT 3 cut(s) 1405, 2698, 3289
AgeI ACCGGT 1 cut(s) 5217
AhlI ACTAGT 2 cut(s) 4442, 5059
AjnI CCWGG 8 cut(s) 1333, 2173, 3739, 3831, 4096, 4219, 4418, 4493
AjuI GAANNNNNNNTTGG 4 cut(s) 1955, 1987, 4071, 4103
Alw21I GWGCWC 4 cut(s) 1548, 1679, 2966, 3438
Alw44I GTGCAC 1 cut(s) 1544
AlwNI CAGNNNCTG 1 cut(s) 4235
Ama87I CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
Aor13HI TCCGGA 1 cut(s) 1372
Aor51HI AGCGCT 1 cut(s) 1604
AoxI GGCC 5 cut(s) 1891, 2956, 3459, 3632, 4431
ApaLI GTGCAC 1 cut(s) 1544
ApeKI GCWGC 9 cut(s) 2360, 2474, 2477, 2492, 2629, 3080, 3695, 3929, 4809
ArsI GACNNNNNNTTYG 2 cut(s) 2033, 2065
AseI ATTAAT 1 cut(s) 1188
AsiGI ACCGGT 1 cut(s) 5217
Asp700I GAANNNNTTC 3 cut(s) 2835, 3331, 3528
Asp718I GGTACC 1 cut(s) 5078
AspLEI GCGC 3 cut(s) 1605, 1981, 2550
AspS9I GGNCC 6 cut(s) 1122, 1479, 3460, 4788, 5220, 5256
AsuC2I CCSGG 3 cut(s) 2511, 3314, 5097
AsuII TTCGAA 1 cut(s) 3954
AsuNHI GCTAGC 3 cut(s) 1985, 2500, 4805
AvaI CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
AvaII GGWCC 5 cut(s) 1122, 1479, 4788, 5220, 5256
BaeGI GKGCMC 1 cut(s) 1548
BalI TGGCCA 2 cut(s) 1893, 4433
BamHI GGATCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 5078
BanII GRGCYC 2 cut(s) 1679, 3438
BarI GAAGNNNNNNTAC 4 cut(s) 3753, 3785, 4602, 4634
BbsI GAAGAC 4 cut(s) 1088, 1408, 2701, 3608
Bbv12I GWGCWC 4 cut(s) 1548, 1679, 2966, 3438
BbvCI CCTCAGC 2 cut(s) 150, 1554
BbvI GCAGC 9 cut(s) 2347, 2461, 2464, 2479, 2641, 3092, 3682, 3941, 4821
BceAI ACGGC 5 cut(s) 128, 1404, 4908, 5052, 5192
BcgI CGANNNNNNTGC 6 cut(s) 326, 360, 2539, 2573, 4891, 4925
BciT130I CCWGG 8 cut(s) 1335, 2175, 3741, 3833, 4098, 4221, 4420, 4495
BciVI GTATCC 2 cut(s) 664, 4078
BcnI CCSGG 3 cut(s) 2511, 3314, 5097
BcuI ACTAGT 2 cut(s) 4442, 5059
BfmI CTRYAG 6 cut(s) 2733, 2793, 3696, 3805, 4377, 4813
BfoI RGCGCY 1 cut(s) 1606
BfrI CTTAAG 1 cut(s) 2327
BfuAI ACCTGC 2 cut(s) 1288, 3544
BfuI GTATCC 2 cut(s) 664, 4078
BglII AGATCT 1 cut(s) 1446
BlpI GCTNAGC 2 cut(s) 2496, 2535
BmcAI AGTACT 2 cut(s) 4697, 4819
Bme18I GGWCC 5 cut(s) 1122, 1479, 4788, 5220, 5256
BmeT110I CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
BmgT120I GGNCC 6 cut(s) 1122, 1479, 3460, 4788, 5220, 5256
BmrI ACTGGG 4 cut(s) 1889, 2223, 3902, 3927
BmtI GCTAGC 3 cut(s) 1989, 2504, 4809
BmuI ACTGGG 4 cut(s) 1889, 2223, 3902, 3927
BoxI GACNNNNGTC 1 cut(s) 4542
BpiI GAAGAC 4 cut(s) 1088, 1408, 2701, 3608
BplI GAGNNNNNCTC 2 cut(s) 2766, 2798
BpmI CTGGAG 7 cut(s) 47, 140, 148, 3269, 3925, 4119, 5178
Bpu10I CCTNAGC 3 cut(s) 150, 1554, 2604
Bpu1102I GCTNAGC 2 cut(s) 2496, 2535
Bpu14I TTCGAA 1 cut(s) 3954
BpuEI CTTGAG 5 cut(s) 458, 1619, 1682, 3422, 3452
BpuMI CCSGG 3 cut(s) 2511, 3314, 5097
Bsa29I ATCGAT 2 cut(s) 2225, 2559
BsaAI YACGTR 1 cut(s) 2399
BsaBI GATNNNNATC 1 cut(s) 3307
BsaI GGTCTC 3 cut(s) 3783, 3960, 5247
BsaWI WCCGGW 2 cut(s) 1372, 5217
Bsc4I CCNNNNNNNGG 8 cut(s) 163, 1489, 3145, 3320, 3468, 3550, 4082, 4528
Bse118I RCCGGY 3 cut(s) 825, 5217, 5238
Bse3DI GCAATG 6 cut(s) 705, 1479, 2325, 2550, 4013, 4800
Bse8I GATNNNNATC 1 cut(s) 3307
BseAI TCCGGA 1 cut(s) 1372
BseBI CCWGG 8 cut(s) 1335, 2175, 3741, 3833, 4098, 4221, 4420, 4495
BseCI ATCGAT 2 cut(s) 2225, 2559
BseGI GGATG 5 cut(s) 1810, 1981, 2366, 3391, 4291
BseJI GATNNNNATC 1 cut(s) 3307
BseLI CCNNNNNNNGG 8 cut(s) 163, 1489, 3145, 3320, 3468, 3550, 4082, 4528
BseMI GCAATG 6 cut(s) 705, 1479, 2325, 2550, 4013, 4800
BseRI GAGGAG 6 cut(s) 81, 84, 87, 866, 1628, 2306
BseSI GKGCMC 1 cut(s) 1548
BseXI GCAGC 9 cut(s) 2347, 2461, 2464, 2479, 2641, 3092, 3682, 3941, 4821
BseYI CCCAGC 5 cut(s) 576, 1118, 1167, 3977, 4847
BsgI GTGCAG 2 cut(s) 3099, 3720
Bsh1236I CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
BshFI GGCC 5 cut(s) 1893, 2958, 3461, 3634, 4433
BshNI GGYRCC 1 cut(s) 5078
BshTI ACCGGT 1 cut(s) 5217
BshVI ATCGAT 2 cut(s) 2225, 2559
BsiHKAI GWGCWC 4 cut(s) 1548, 1679, 2966, 3438
BsiHKCI CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
BsiSI CCGG 8 cut(s) 636, 826, 1373, 2510, 3314, 5097, 5218, 5239
BslFI GGGAC 6 cut(s) 131, 1465, 1745, 1896, 3934, 4476
BslI CCNNNNNNNGG 8 cut(s) 163, 1489, 3145, 3320, 3468, 3550, 4082, 4528
BsmBI CGTCTC 4 cut(s) 757, 3245, 5233, 5252
BsmFI GGGAC 6 cut(s) 131, 1465, 1745, 1896, 3934, 4476
BsnI GGCC 5 cut(s) 1893, 2958, 3461, 3634, 4433
Bso31I GGTCTC 3 cut(s) 3783, 3960, 5247
BsoBI CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
Bsp119I TTCGAA 1 cut(s) 3954
Bsp1286I GDGCHC 4 cut(s) 1548, 1679, 2966, 3438
Bsp13I TCCGGA 1 cut(s) 1372
Bsp1720I GCTNAGC 2 cut(s) 2496, 2535
Bsp19I CCATGG 1 cut(s) 5012
Bsp68I TCGCGA 1 cut(s) 248
BspACI CCGC 6 cut(s) 315, 340, 633, 1588, 3324, 4905
BspANI GGCC 5 cut(s) 1893, 2958, 3461, 3634, 4433
BspDI ATCGAT 2 cut(s) 2225, 2559
BspEI TCCGGA 1 cut(s) 1372
BspFNI CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
BspHI TCATGA 3 cut(s) 1207, 1855, 3204
BspMAI CTGCAG 1 cut(s) 3700
BspMI ACCTGC 2 cut(s) 1288, 3544
BspOI GCTAGC 3 cut(s) 1989, 2504, 4809
BspQI GCTCTTC 3 cut(s) 2752, 2889, 2971
BspT104I TTCGAA 1 cut(s) 3954
BspT107I GGYRCC 1 cut(s) 5078
BspTI CTTAAG 1 cut(s) 2327
BspTNI GGTCTC 3 cut(s) 3783, 3960, 5247
BsrBI CCGCTC 3 cut(s) 340, 1588, 4905
BsrDI GCAATG 6 cut(s) 705, 1479, 2325, 2550, 4013, 4800
BsrFI RCCGGY 3 cut(s) 825, 5217, 5238
BssAI RCCGGY 3 cut(s) 825, 5217, 5238
BssNAI GTATAC 2 cut(s) 3662, 5102
BssT1I CCWWGG 2 cut(s) 4540, 5012
Bst1107I GTATAC 2 cut(s) 3662, 5102
Bst2UI CCWGG 8 cut(s) 1335, 2175, 3741, 3833, 4098, 4221, 4420, 4495
Bst6I CTCTTC 8 cut(s) 210, 1576, 2175, 2752, 2889, 2971, 3800, 4102
BstAFI CTTAAG 1 cut(s) 2327
BstBAI YACGTR 1 cut(s) 2399
BstBI TTCGAA 1 cut(s) 3954
BstDSI CCRYGG 2 cut(s) 1888, 5012
BstEII GGTNACC 1 cut(s) 4535
BstENI CCTNNNNNAGG 2 cut(s) 4080, 4526
BstF5I GGATG 5 cut(s) 1810, 1981, 2366, 3391, 4291
BstFNI CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
BstH2I RGCGCY 1 cut(s) 1606
BstHHI GCGC 3 cut(s) 1605, 1981, 2550
BstNI CCWGG 8 cut(s) 1335, 2175, 3741, 3833, 4098, 4221, 4420, 4495
BstNSI RCATGY 7 cut(s) 1409, 2318, 2675, 3293, 3730, 4834, 4844
BstPAI GACNNNNGTC 1 cut(s) 4542
BstPI GGTNACC 1 cut(s) 4535
BstSFI CTRYAG 6 cut(s) 2733, 2793, 3696, 3805, 4377, 4813
BstSLI GKGCMC 1 cut(s) 1548
BstUI CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
BstV1I GCAGC 9 cut(s) 2347, 2461, 2464, 2479, 2641, 3092, 3682, 3941, 4821
BstV2I GAAGAC 4 cut(s) 1088, 1408, 2701, 3608
BstX2I RGATCY 9 cut(s) 57, 240, 1040, 1446, 2108, 2513, 2608, 2810, 2938
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 9 cut(s) 57, 240, 1040, 1446, 2108, 2513, 2608, 2810, 2938
BstZ17I GTATAC 2 cut(s) 3662, 5102
Bsu15I ATCGAT 2 cut(s) 2225, 2559
BsuI GTATCC 2 cut(s) 664, 4078
BsuRI GGCC 5 cut(s) 1893, 2958, 3461, 3634, 4433
BsuTUI ATCGAT 2 cut(s) 2225, 2559
BtgI CCRYGG 2 cut(s) 1888, 5012
BtgZI GCGATG 2 cut(s) 2295, 4442
BtsCI GGATG 5 cut(s) 1810, 1981, 2366, 3391, 4291
BtsIMutI CAGTG 6 cut(s) 23, 174, 2966, 3232, 4299, 4758
BtuMI TCGCGA 1 cut(s) 248
BveI ACCTGC 2 cut(s) 1288, 3544
CaiI CAGNNNCTG 1 cut(s) 4235
CciI TCATGA 3 cut(s) 1207, 1855, 3204
CfoI GCGC 3 cut(s) 1605, 1981, 2550
Cfr10I RCCGGY 3 cut(s) 825, 5217, 5238
Cfr13I GGNCC 6 cut(s) 1122, 1479, 3460, 4788, 5220, 5256
ClaI ATCGAT 2 cut(s) 2225, 2559
CseI GACGC 4 cut(s) 314, 2147, 2286, 2706
CsiI ACCWGGT 1 cut(s) 3739
CspAI ACCGGT 1 cut(s) 5217
DraI TTTAAA 3 cut(s) 2071, 2647, 4023
DrdI GACNNNNNNGTC 1 cut(s) 3603
DseDI GACNNNNNNGTC 1 cut(s) 3603
EaeI YGGCCR 2 cut(s) 1891, 4431
Eam1104I CTCTTC 8 cut(s) 210, 1576, 2175, 2752, 2889, 2971, 3800, 4102
EarI CTCTTC 8 cut(s) 210, 1576, 2175, 2752, 2889, 2971, 3800, 4102
EciI GGCGGA 1 cut(s) 3339
Ecl136II GAGCTC 2 cut(s) 1677, 3436
Eco130I CCWWGG 2 cut(s) 4540, 5012
Eco147I AGGCCT 1 cut(s) 3634
Eco24I GRGCYC 2 cut(s) 1679, 3438
Eco31I GGTCTC 3 cut(s) 3783, 3960, 5247
Eco32I GATATC 2 cut(s) 4579, 4798
Eco47I GGWCC 5 cut(s) 1122, 1479, 4788, 5220, 5256
Eco47III AGCGCT 1 cut(s) 1604
Eco53kI GAGCTC 2 cut(s) 1677, 3436
Eco57I CTGAAG 6 cut(s) 1056, 2967, 3102, 4098, 4167, 4508
Eco88I CYCGRG 6 cut(s) 335, 354, 444, 1833, 3272, 3483
Eco91I GGTNACC 1 cut(s) 4535
EcoICRI GAGCTC 2 cut(s) 1677, 3436
EcoNI CCTNNNNNAGG 2 cut(s) 4080, 4526
EcoO109I RGGNCCY 2 cut(s) 1479, 5256
EcoO65I GGTNACC 1 cut(s) 4535
EcoRI GAATTC 2 cut(s) 1707, 2842
EcoRII CCWGG 8 cut(s) 1333, 2173, 3739, 3831, 4096, 4219, 4418, 4493
EcoRV GATATC 2 cut(s) 4579, 4798
EcoT14I CCWWGG 2 cut(s) 4540, 5012
EcoT22I ATGCAT 2 cut(s) 527, 2673
EcoT38I GRGCYC 2 cut(s) 1679, 3438
ErhI CCWWGG 2 cut(s) 4540, 5012
Esp3I CGTCTC 4 cut(s) 757, 3245, 5233, 5252
FalI AAGNNNNNCTT 4 cut(s) 3701, 3733, 4685, 4717
FaqI GGGAC 6 cut(s) 131, 1465, 1745, 1896, 3934, 4476
FauI CCCGC 1 cut(s) 640
FblI GTMKAC 4 cut(s) 2269, 2823, 3661, 5101
FokI GGATG 5 cut(s) 1797, 1988, 2353, 3398, 4298
FriOI GRGCYC 2 cut(s) 1679, 3438
GlaI GCGC 3 cut(s) 1604, 1980, 2549
GsaI CCCAGC 5 cut(s) 580, 1122, 1171, 3981, 4851
GsuI CTGGAG 7 cut(s) 47, 140, 148, 3269, 3925, 4119, 5178
HaeII RGCGCY 1 cut(s) 1606
HaeIII GGCC 5 cut(s) 1893, 2958, 3461, 3634, 4433
HapII CCGG 8 cut(s) 636, 826, 1373, 2510, 3314, 5097, 5218, 5239
HgaI GACGC 4 cut(s) 314, 2147, 2286, 2706
HhaI GCGC 3 cut(s) 1605, 1981, 2550
Hin6I GCGC 3 cut(s) 1603, 1979, 2548
HinP1I GCGC 3 cut(s) 1603, 1979, 2548
HincII GTYRAC 3 cut(s) 831, 1290, 4739
HindII GTYRAC 3 cut(s) 831, 1290, 4739
HindIII AAGCTT 5 cut(s) 719, 2189, 2649, 3710, 5151
HpaI GTTAAC 1 cut(s) 1290
HpaII CCGG 8 cut(s) 636, 826, 1373, 2510, 3314, 5097, 5218, 5239
Hpy99I CGWCG 7 cut(s) 330, 2250, 3162, 3600, 3777, 4245, 5178
HpyCH4IV ACGT 4 cut(s) 2245, 2398, 3775, 4120
HpySE526I ACGT 4 cut(s) 2245, 2398, 3775, 4120
HspAI GCGC 3 cut(s) 1603, 1979, 2548
KflI GGGWCCC 1 cut(s) 1479
Kpn2I TCCGGA 1 cut(s) 1372
KpnI GGTACC 1 cut(s) 5082
KspAI GTTAAC 1 cut(s) 1290
LguI GCTCTTC 3 cut(s) 2752, 2889, 2971
Lsp1109I GCAGC 9 cut(s) 2347, 2461, 2464, 2479, 2641, 3092, 3682, 3941, 4821
MabI ACCWGGT 1 cut(s) 3739
MaeII ACGT 4 cut(s) 2245, 2398, 3775, 4120
MbiI CCGCTC 3 cut(s) 340, 1588, 4905
MfeI CAATTG 2 cut(s) 1741, 3318
MflI RGATCY 9 cut(s) 57, 240, 1040, 1446, 2108, 2513, 2608, 2810, 2938
MhlI GDGCHC 4 cut(s) 1548, 1679, 2966, 3438
MlsI TGGCCA 2 cut(s) 1893, 4433
MluI ACGCGT 1 cut(s) 2698
MluNI TGGCCA 2 cut(s) 1893, 4433
MmeI TCCRAC 2 cut(s) 2086, 4069
Mox20I TGGCCA 2 cut(s) 1893, 4433
Mph1103I ATGCAT 2 cut(s) 527, 2673
MroI TCCGGA 1 cut(s) 1372
MroXI GAANNNNTTC 3 cut(s) 2835, 3331, 3528
MscI TGGCCA 2 cut(s) 1893, 4433
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 2 cut(s) 1893, 4433
MspA1I CMGCKG 1 cut(s) 211
MspCI CTTAAG 1 cut(s) 2327
MspI CCGG 8 cut(s) 636, 826, 1373, 2510, 3314, 5097, 5218, 5239
MunI CAATTG 2 cut(s) 1741, 3318
MvaI CCWGG 8 cut(s) 1335, 2175, 3741, 3833, 4098, 4221, 4420, 4495
MvnI CGCG 5 cut(s) 248, 330, 1981, 2280, 2700
NciI CCSGG 3 cut(s) 2511, 3314, 5097
NcoI CCATGG 1 cut(s) 5012
NheI GCTAGC 3 cut(s) 1985, 2500, 4805
NmeAIII GCCGAG 1 cut(s) 1660
NmuCI GTSAC 6 cut(s) 1073, 3285, 3985, 4535, 4598, 4992
NruI TCGCGA 1 cut(s) 248
NsiI ATGCAT 2 cut(s) 527, 2673
NspI RCATGY 7 cut(s) 1409, 2318, 2675, 3293, 3730, 4834, 4844
NspV TTCGAA 1 cut(s) 3954
PaeI GCATGC 1 cut(s) 3730
PaeR7I CTCGAG 4 cut(s) 335, 354, 444, 1833
PagI TCATGA 3 cut(s) 1207, 1855, 3204
PaqCI CACCTGC 2 cut(s) 1288, 3544
PasI CCCWGGG 1 cut(s) 4494
PceI AGGCCT 1 cut(s) 3634
PciI ACATGT 2 cut(s) 1405, 3289
PciSI GCTCTTC 3 cut(s) 2752, 2889, 2971
PcsI WCGNNNNNNNCGW 2 cut(s) 892, 4898
PdmI GAANNNNTTC 3 cut(s) 2835, 3331, 3528
PfoI TCCNGGA 1 cut(s) 2509
PinAI ACCGGT 1 cut(s) 5217
Ppu21I YACGTR 1 cut(s) 2399
PpuMI RGGWCCY 2 cut(s) 1479, 5256
PscI ACATGT 2 cut(s) 1405, 3289
PshAI GACNNNNGTC 1 cut(s) 4542
PshBI ATTAAT 1 cut(s) 1188
Psp124BI GAGCTC 2 cut(s) 1679, 3438
Psp5II RGGWCCY 2 cut(s) 1479, 5256
Psp6I CCWGG 8 cut(s) 1333, 2173, 3739, 3831, 4096, 4219, 4418, 4493
PspEI GGTNACC 1 cut(s) 4535
PspFI CCCAGC 5 cut(s) 576, 1118, 1167, 3977, 4847
PspGI CCWGG 8 cut(s) 1333, 2173, 3739, 3831, 4096, 4219, 4418, 4493
PspPI GGNCC 6 cut(s) 1122, 1479, 3460, 4788, 5220, 5256
PspPPI RGGWCCY 2 cut(s) 1479, 5256
PspXI VCTCGAGB 1 cut(s) 354
PsrI GAACNNNNNNTAC 2 cut(s) 2079, 2111
PstI CTGCAG 1 cut(s) 3700
PstNI CAGNNNCTG 1 cut(s) 4235
PsuI RGATCY 9 cut(s) 57, 240, 1040, 1446, 2108, 2513, 2608, 2810, 2938
PvuII CAGCTG 1 cut(s) 211
RruI TCGCGA 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 536
SacI GAGCTC 2 cut(s) 1679, 3438
SapI GCTCTTC 3 cut(s) 2752, 2889, 2971
Sau96I GGNCC 6 cut(s) 1122, 1479, 3460, 4788, 5220, 5256
ScaI AGTACT 2 cut(s) 4697, 4819
SduI GDGCHC 4 cut(s) 1548, 1679, 2966, 3438
SexAI ACCWGGT 1 cut(s) 3739
SfcI CTRYAG 6 cut(s) 2733, 2793, 3696, 3805, 4377, 4813
Sfr274I CTCGAG 4 cut(s) 335, 354, 444, 1833
SfuI TTCGAA 1 cut(s) 3954
SinI GGWCC 5 cut(s) 1122, 1479, 4788, 5220, 5256
SlaI CTCGAG 4 cut(s) 335, 354, 444, 1833
SmiMI CAYNNNNRTG 1 cut(s) 536
SpeI ACTAGT 2 cut(s) 4442, 5059
SphI GCATGC 1 cut(s) 3730
SseBI AGGCCT 1 cut(s) 3634
SsiI CCGC 6 cut(s) 315, 340, 633, 1588, 3324, 4905
SspI AATATT 4 cut(s) 1935, 2447, 2465, 3171
SstI GAGCTC 2 cut(s) 1679, 3438
StuI AGGCCT 1 cut(s) 3634
StyI CCWWGG 2 cut(s) 4540, 5012
TaiI ACGT 4 cut(s) 2248, 2401, 3778, 4123
TatI WGTACW 4 cut(s) 659, 4615, 4695, 4817
TauI GCSGC 1 cut(s) 343
TscAI CASTG 6 cut(s) 30, 181, 2966, 3232, 4306, 4758
TseFI GTSAC 6 cut(s) 1073, 3285, 3985, 4535, 4598, 4992
TseI GCWGC 9 cut(s) 2360, 2474, 2477, 2492, 2629, 3080, 3695, 3929, 4809
Tsp45I GTSAC 6 cut(s) 1073, 3285, 3985, 4535, 4598, 4992
TspGWI ACGGA 9 cut(s) 100, 884, 1877, 2841, 3344, 3484, 3685, 4655, 5215
TspRI CASTG 6 cut(s) 30, 181, 2966, 3232, 4306, 4758
Vha464I CTTAAG 1 cut(s) 2327
VneI GTGCAC 1 cut(s) 1544
VpaK11BI GGWCC 5 cut(s) 1122, 1479, 4788, 5220, 5256
VspI ATTAAT 1 cut(s) 1188
XagI CCTNNNNNAGG 2 cut(s) 4080, 4526
XceI RCATGY 7 cut(s) 1409, 2318, 2675, 3293, 3730, 4834, 4844
XhoI CTCGAG 4 cut(s) 335, 354, 444, 1833
XmiI GTMKAC 4 cut(s) 2269, 2823, 3661, 5101
XmnI GAANNNNTTC 3 cut(s) 2835, 3331, 3528
ZrmI AGTACT 2 cut(s) 4697, 4819
Zsp2I ATGCAT 2 cut(s) 527, 2673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.