BEST Arabidopsis thaliana protein match is B-block binding subunit of TFIIIC (TAIR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17450 AT1G17450 AT1G17450 AT1G58766 AT1G59077 AT1G59453 AT1G59460 AT1G59470 |
| fragaria_vesca | FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 |
| malus_domestica | MD09G1184300.v1.1 |
| prunus_persica | Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 |
| pyrus_communis | pycom09g10190 |
| rosa_chinensis | RchiOBHm_Chr2g0145161 |
| rosa_laevigata | RLG00000020130 |
| rosa_multiflora | Rmu_co8516753.1_g000001 Rmu_sc0002506.1_g000034 |
| rosa_roxburghii | Rroxscaffold_2G00100830 |
| rosa_rugosa | Rorug02G0390700 Rorug02G0390800 |
| rosa_samantha | Rh2AG443400 Rh2BG454400 Rh2CG430400 Rh2DG464300 |
| rosa_wichuraiana | Rw2G036260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1728 |
| Acc65I | GGTACC | 1 cut(s) | 1742 |
| AccB1I | GGYRCC | 1 cut(s) | 1742 |
| AccI | GTMKAC | 3 cut(s) | 328, 356, 1765 |
| AccII | CGCG | 2 cut(s) | 280, 1734 |
| AciI | CCGC | 7 cut(s) | 29, 360, 468, 1175, 1379, 1572, 1890 |
| AclWI | GGATC | 1 cut(s) | 1702 |
| AcsI | RAATTY | 6 cut(s) | 225, 418, 541, 691, 833, 1883 |
| AcuI | CTGAAG | 2 cut(s) | 648, 765 |
| AfaI | GTAC | 6 cut(s) | 1284, 1364, 1486, 1744, 1800, 1853 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 210, 749, 1195 |
| AgeI | ACCGGT | 2 cut(s) | 1910, 1925 |
| AgsI | TTSAA | 9 cut(s) | 136, 245, 368, 561, 691, 1223, 1289, 1309, 1491 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 964 |
| AhlI | ACTAGT | 1 cut(s) | 1723 |
| AjnI | CCWGG | 2 cut(s) | 886, 1063 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 738, 770, 1019, 1051 |
| Alw21I | GWGCWC | 1 cut(s) | 180 |
| Alw26I | GTCTC | 3 cut(s) | 211, 480, 1416 |
| AlwI | GGATC | 1 cut(s) | 1702 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 95, 902 |
| Ama87I | CYCGRG | 1 cut(s) | 1160 |
| ApeKI | GCWGC | 1 cut(s) | 596 |
| ApoI | RAATTY | 6 cut(s) | 225, 418, 541, 691, 833, 1883 |
| AseI | ATTAAT | 1 cut(s) | 1242 |
| AsiGI | ACCGGT | 2 cut(s) | 1910, 1925 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1284, 1961 |
| Asp718I | GGTACC | 1 cut(s) | 1742 |
| AspS9I | GGNCC | 2 cut(s) | 966, 1892 |
| AsuC2I | CCSGG | 2 cut(s) | 575, 1761 |
| AsuII | TTCGAA | 1 cut(s) | 1170 |
| AvaI | CYCGRG | 1 cut(s) | 1160 |
| AvaII | GGWCC | 2 cut(s) | 966, 1892 |
| BanI | GGYRCC | 1 cut(s) | 1742 |
| BanII | GRGCYC | 1 cut(s) | 180 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 420, 452, 1269, 1301 |
| BbsI | GAAGAC | 2 cut(s) | 275, 1907 |
| Bbv12I | GWGCWC | 1 cut(s) | 180 |
| BbvCI | CCTCAGC | 1 cut(s) | 795 |
| BbvI | GCAGC | 1 cut(s) | 583 |
| BccI | CCATC | 7 cut(s) | 181, 509, 1376, 1609, 1685, 1712, 1841 |
| BciT130I | CCWGG | 2 cut(s) | 888, 1065 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcnI | CCSGG | 2 cut(s) | 575, 1761 |
| BcoDI | GTCTC | 3 cut(s) | 211, 480, 1416 |
| BcuI | ACTAGT | 1 cut(s) | 1723 |
| BfaI | CTAG | 6 cut(s) | 408, 845, 1101, 1110, 1724, 1844 |
| BfmI | CTRYAG | 4 cut(s) | 472, 1131, 1480, 1816 |
| BisI | GCNGC | 1 cut(s) | 597 |
| BlsI | GCNGC | 1 cut(s) | 598 |
| BmcAI | AGTACT | 3 cut(s) | 1284, 1364, 1486 |
| Bme1390I | CCNGG | 4 cut(s) | 575, 888, 1065, 1761 |
| Bme18I | GGWCC | 2 cut(s) | 966, 1892 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 964 |
| BmeT110I | CYCGRG | 1 cut(s) | 1160 |
| BmgT120I | GGNCC | 2 cut(s) | 966, 1892 |
| BmiI | GGNNCC | 2 cut(s) | 762, 1744 |
| BmrFI | CCNGG | 4 cut(s) | 575, 888, 1065, 1761 |
| BmrI | ACTGGG | 1 cut(s) | 594 |
| BmsI | GCATC | 5 cut(s) | 112, 189, 1039, 1632, 1740 |
| BmuI | ACTGGG | 1 cut(s) | 594 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1209 |
| BpiI | GAAGAC | 2 cut(s) | 275, 1907 |
| BpmI | CTGGAG | 1 cut(s) | 1850 |
| Bpu10I | CCTNAGC | 1 cut(s) | 795 |
| Bpu14I | TTCGAA | 1 cut(s) | 1170 |
| BpuEI | CTTGAG | 3 cut(s) | 164, 194, 592 |
| BpuMI | CCSGG | 2 cut(s) | 575, 1761 |
| BsaAI | YACGTR | 1 cut(s) | 1429 |
| BsaI | GGTCTC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 7 cut(s) | 450, 886, 1085, 1161, 1207, 1676, 1977 |
| BsaWI | WCCGGW | 4 cut(s) | 968, 1124, 1910, 1925 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1582, 1612 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 210, 749, 1195 |
| Bse118I | RCCGGY | 2 cut(s) | 1910, 1925 |
| Bse1I | ACTGG | 2 cut(s) | 429, 589 |
| Bse3DI | GCAATG | 2 cut(s) | 680, 1101 |
| BseBI | CCWGG | 2 cut(s) | 888, 1065 |
| BseDI | CCNNGG | 7 cut(s) | 450, 886, 1085, 1161, 1207, 1676, 1977 |
| BseGI | GGATG | 6 cut(s) | 133, 649, 805, 958, 1054, 1387 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 210, 749, 1195 |
| BseMI | GCAATG | 2 cut(s) | 680, 1101 |
| BseMII | CTCAG | 5 cut(s) | 67, 551, 786, 1506, 1823 |
| BseNI | ACTGG | 2 cut(s) | 429, 589 |
| BseRI | GAGGAG | 2 cut(s) | 1151, 1787 |
| BseXI | GCAGC | 1 cut(s) | 583 |
| BsgI | GTGCAG | 2 cut(s) | 356, 387 |
| Bsh1236I | CGCG | 2 cut(s) | 280, 1734 |
| BshNI | GGYRCC | 1 cut(s) | 1742 |
| BshTI | ACCGGT | 2 cut(s) | 1910, 1925 |
| BsiHKAI | GWGCWC | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1160 |
| BsiSI | CCGG | 7 cut(s) | 575, 969, 1125, 1761, 1911, 1926, 1954 |
| BslFI | GGGAC | 1 cut(s) | 1143 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 210, 749, 1195 |
| BsmAI | GTCTC | 3 cut(s) | 211, 480, 1416 |
| BsmFI | GGGAC | 1 cut(s) | 1143 |
| Bso31I | GGTCTC | 1 cut(s) | 211 |
| BsoBI | CYCGRG | 1 cut(s) | 1160 |
| Bsp119I | TTCGAA | 1 cut(s) | 1170 |
| Bsp1286I | GDGCHC | 1 cut(s) | 180 |
| Bsp143I | GATC | 3 cut(s) | 259, 1355, 1694 |
| Bsp19I | CCATGG | 1 cut(s) | 1676 |
| BspACI | CCGC | 7 cut(s) | 29, 360, 468, 1175, 1379, 1572, 1890 |
| BspCNI | CTCAG | 5 cut(s) | 66, 550, 787, 1507, 1822 |
| BspFNI | CGCG | 2 cut(s) | 280, 1734 |
| BspHI | TCATGA | 1 cut(s) | 33 |
| BspLI | GGNNCC | 2 cut(s) | 762, 1744 |
| BspMAI | CTGCAG | 1 cut(s) | 1135 |
| BspPI | GGATC | 1 cut(s) | 1702 |
| BspT104I | TTCGAA | 1 cut(s) | 1170 |
| BspT107I | GGYRCC | 1 cut(s) | 1742 |
| BspTNI | GGTCTC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 2 cut(s) | 680, 1101 |
| BsrFI | RCCGGY | 2 cut(s) | 1910, 1925 |
| BsrI | ACTGG | 2 cut(s) | 429, 589 |
| BssAI | RCCGGY | 2 cut(s) | 1910, 1925 |
| BssECI | CCNNGG | 7 cut(s) | 450, 886, 1085, 1161, 1207, 1676, 1977 |
| BssMI | GATC | 3 cut(s) | 259, 1355, 1694 |
| BssNAI | GTATAC | 2 cut(s) | 329, 1766 |
| BssT1I | CCWWGG | 4 cut(s) | 1085, 1207, 1676, 1977 |
| Bst1107I | GTATAC | 2 cut(s) | 329, 1766 |
| Bst2UI | CCWGG | 2 cut(s) | 888, 1065 |
| Bst4CI | ACNGT | 6 cut(s) | 250, 372, 1057, 1410, 1484, 1747 |
| Bst6I | CTCTTC | 2 cut(s) | 467, 769 |
| BstBAI | YACGTR | 1 cut(s) | 1429 |
| BstBI | TTCGAA | 1 cut(s) | 1170 |
| BstC8I | GCNNGC | 2 cut(s) | 395, 1092 |
| BstDEI | CTNAG | 9 cut(s) | 53, 389, 537, 795, 828, 1044, 1214, 1515, 1809 |
| BstDSI | CCRYGG | 1 cut(s) | 1676 |
| BstEII | GGTNACC | 2 cut(s) | 455, 1202 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 747, 1193 |
| BstF5I | GGATG | 6 cut(s) | 133, 649, 805, 958, 1054, 1387 |
| BstFNI | CGCG | 2 cut(s) | 280, 1734 |
| BstKTI | GATC | 3 cut(s) | 262, 1358, 1697 |
| BstMAI | GTCTC | 3 cut(s) | 211, 480, 1416 |
| BstMBI | GATC | 3 cut(s) | 259, 1355, 1694 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1106, 1629 |
| BstNI | CCWGG | 2 cut(s) | 888, 1065 |
| BstNSI | RCATGY | 2 cut(s) | 305, 397 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1209 |
| BstPI | GGTNACC | 2 cut(s) | 455, 1202 |
| BstSCI | CCNGG | 4 cut(s) | 573, 886, 1063, 1759 |
| BstSFI | CTRYAG | 4 cut(s) | 472, 1131, 1480, 1816 |
| BstSNI | TACGTA | 1 cut(s) | 1429 |
| BstUI | CGCG | 2 cut(s) | 280, 1734 |
| BstV1I | GCAGC | 1 cut(s) | 583 |
| BstV2I | GAAGAC | 2 cut(s) | 275, 1907 |
| BstZ17I | GTATAC | 2 cut(s) | 329, 1766 |
| BtgI | CCRYGG | 1 cut(s) | 1676 |
| BtgZI | GCGATG | 1 cut(s) | 261 |
| BtsCI | GGATG | 6 cut(s) | 133, 649, 805, 958, 1054, 1387 |
| BtsIMutI | CAGTG | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 2 cut(s) | 395, 1092 |
| CaiI | CAGNNNCTG | 2 cut(s) | 95, 902 |
| CciI | TCATGA | 1 cut(s) | 33 |
| Cfr10I | RCCGGY | 2 cut(s) | 1910, 1925 |
| Cfr13I | GGNCC | 2 cut(s) | 966, 1892 |
| CseI | GACGC | 1 cut(s) | 269 |
| CsiI | ACCWGGT | 1 cut(s) | 1063 |
| Csp6I | GTAC | 6 cut(s) | 1283, 1363, 1485, 1743, 1799, 1852 |
| CspAI | ACCGGT | 2 cut(s) | 1910, 1925 |
| CviAII | CATG | 7 cut(s) | 34, 302, 394, 985, 1508, 1677, 1855 |
| CviQI | GTAC | 6 cut(s) | 1283, 1363, 1485, 1743, 1799, 1852 |
| DdeI | CTNAG | 9 cut(s) | 53, 389, 537, 795, 828, 1044, 1214, 1515, 1809 |
| DpnI | GATC | 3 cut(s) | 261, 1357, 1696 |
| DpnII | GATC | 3 cut(s) | 259, 1355, 1694 |
| DraI | TTTAAA | 1 cut(s) | 783 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1728 |
| DriI | GACNNNNNGTC | 1 cut(s) | 964 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1728 |
| Eam1104I | CTCTTC | 2 cut(s) | 467, 769 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 964 |
| EarI | CTCTTC | 2 cut(s) | 467, 769 |
| EciI | GGCGGA | 1 cut(s) | 1394 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco105I | TACGTA | 1 cut(s) | 1429 |
| Eco130I | CCWWGG | 4 cut(s) | 1085, 1207, 1676, 1977 |
| Eco24I | GRGCYC | 1 cut(s) | 180 |
| Eco31I | GGTCTC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 2 cut(s) | 966, 1892 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 2 cut(s) | 648, 765 |
| Eco88I | CYCGRG | 1 cut(s) | 1160 |
| Eco91I | GGTNACC | 2 cut(s) | 455, 1202 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 747, 1193 |
| EcoO65I | GGTNACC | 2 cut(s) | 455, 1202 |
| EcoRII | CCWGG | 2 cut(s) | 886, 1063 |
| EcoT14I | CCWWGG | 4 cut(s) | 1085, 1207, 1676, 1977 |
| EcoT38I | GRGCYC | 1 cut(s) | 180 |
| ErhI | CCWWGG | 4 cut(s) | 1085, 1207, 1676, 1977 |
| FaeI | CATG | 7 cut(s) | 37, 305, 397, 988, 1511, 1680, 1858 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1352, 1384, 1970 |
| FaqI | GGGAC | 1 cut(s) | 1143 |
| FatI | CATG | 7 cut(s) | 33, 301, 393, 984, 1507, 1676, 1854 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FblI | GTMKAC | 3 cut(s) | 328, 356, 1765 |
| Fnu4HI | GCNGC | 1 cut(s) | 597 |
| FokI | GGATG | 6 cut(s) | 140, 656, 812, 965, 1061, 1394 |
| FriOI | GRGCYC | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 1 cut(s) | 597 |
| FspBI | CTAG | 6 cut(s) | 408, 845, 1101, 1110, 1724, 1844 |
| GluI | GCNGC | 1 cut(s) | 597 |
| GsuI | CTGGAG | 1 cut(s) | 1850 |
| HapII | CCGG | 7 cut(s) | 575, 969, 1125, 1761, 1911, 1926, 1954 |
| HgaI | GACGC | 1 cut(s) | 269 |
| Hin1II | CATG | 7 cut(s) | 37, 305, 397, 988, 1511, 1680, 1858 |
| HincII | GTYRAC | 2 cut(s) | 1406, 1908 |
| HindII | GTYRAC | 2 cut(s) | 1406, 1908 |
| HindIII | AAGCTT | 3 cut(s) | 377, 1437, 1823 |
| HpaI | GTTAAC | 1 cut(s) | 1908 |
| HpaII | CCGG | 7 cut(s) | 575, 969, 1125, 1761, 1911, 1926, 1954 |
| Hpy188III | TCNNGA | 9 cut(s) | 34, 173, 181, 990, 1160, 1369, 1537, 1553, 1829 |
| Hpy99I | CGWCG | 2 cut(s) | 444, 1734 |
| HpyAV | CCTTC | 7 cut(s) | 110, 743, 845, 1199, 1303, 1622, 1633 |
| HpyCH4III | ACNGT | 6 cut(s) | 250, 372, 1057, 1410, 1484, 1747 |
| HpyCH4IV | ACGT | 4 cut(s) | 787, 864, 1428, 1797 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1106, 1629 |
| HpyF3I | CTNAG | 9 cut(s) | 53, 389, 537, 795, 828, 1044, 1214, 1515, 1809 |
| HpySE526I | ACGT | 4 cut(s) | 787, 864, 1428, 1797 |
| Hsp92II | CATG | 7 cut(s) | 37, 305, 397, 988, 1511, 1680, 1858 |
| KpnI | GGTACC | 1 cut(s) | 1746 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| KspAI | GTTAAC | 1 cut(s) | 1908 |
| Kzo9I | GATC | 3 cut(s) | 259, 1355, 1694 |
| LmnI | GCTCC | 3 cut(s) | 760, 1138, 1603 |
| Lsp1109I | GCAGC | 1 cut(s) | 583 |
| LweI | GCATC | 5 cut(s) | 112, 189, 1039, 1632, 1740 |
| MabI | ACCWGGT | 1 cut(s) | 1063 |
| MaeI | CTAG | 6 cut(s) | 408, 845, 1101, 1110, 1724, 1844 |
| MaeII | ACGT | 4 cut(s) | 787, 864, 1428, 1797 |
| MalI | GATC | 3 cut(s) | 261, 1357, 1696 |
| MboI | GATC | 3 cut(s) | 259, 1355, 1694 |
| MboII | GAAGA | 9 cut(s) | 196, 275, 440, 454, 758, 786, 818, 1235, 1907 |
| MhlI | GDGCHC | 1 cut(s) | 180 |
| MluCI | AATT | 7 cut(s) | 225, 418, 541, 691, 833, 1327, 1883 |
| MlyI | GAGTC | 4 cut(s) | 660, 953, 1034, 1977 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1284, 1961 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspA1I | CMGCKG | 1 cut(s) | 362 |
| MspI | CCGG | 7 cut(s) | 575, 969, 1125, 1761, 1911, 1926, 1954 |
| MspR9I | CCNGG | 4 cut(s) | 575, 888, 1065, 1761 |
| MvaI | CCWGG | 2 cut(s) | 888, 1065 |
| MvnI | CGCG | 2 cut(s) | 280, 1734 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1106, 1629 |
| NciI | CCSGG | 2 cut(s) | 575, 1761 |
| NcoI | CCATGG | 1 cut(s) | 1676 |
| NdeII | GATC | 3 cut(s) | 259, 1355, 1694 |
| NlaIII | CATG | 7 cut(s) | 37, 305, 397, 988, 1511, 1680, 1858 |
| NlaIV | GGNNCC | 2 cut(s) | 762, 1744 |
| NmuCI | GTSAC | 8 cut(s) | 455, 564, 652, 1202, 1265, 1468, 1534, 1659 |
| NspI | RCATGY | 2 cut(s) | 305, 397 |
| NspV | TTCGAA | 1 cut(s) | 1170 |
| PaeI | GCATGC | 1 cut(s) | 397 |
| PagI | TCATGA | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1284, 1961 |
| PfeI | GAWTC | 8 cut(s) | 86, 92, 341, 809, 1079, 1540, 1586, 1643 |
| PinAI | ACCGGT | 2 cut(s) | 1910, 1925 |
| PkrI | GCNGC | 1 cut(s) | 598 |
| PleI | GAGTC | 4 cut(s) | 659, 953, 1034, 1977 |
| PpsI | GAGTC | 4 cut(s) | 659, 953, 1034, 1977 |
| Ppu21I | YACGTR | 1 cut(s) | 1429 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1209 |
| PshBI | ATTAAT | 1 cut(s) | 1242 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 2 cut(s) | 886, 1063 |
| PspEI | GGTNACC | 2 cut(s) | 455, 1202 |
| PspGI | CCWGG | 2 cut(s) | 886, 1063 |
| PspN4I | GGNNCC | 2 cut(s) | 762, 1744 |
| PspPI | GGNCC | 2 cut(s) | 966, 1892 |
| PstI | CTGCAG | 1 cut(s) | 1135 |
| PstNI | CAGNNNCTG | 2 cut(s) | 95, 902 |
| RsaI | GTAC | 6 cut(s) | 1284, 1364, 1486, 1744, 1800, 1853 |
| RsaNI | GTAC | 6 cut(s) | 1283, 1363, 1485, 1743, 1799, 1852 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 597 |
| Sau3AI | GATC | 3 cut(s) | 259, 1355, 1694 |
| Sau96I | GGNCC | 2 cut(s) | 966, 1892 |
| ScaI | AGTACT | 3 cut(s) | 1284, 1364, 1486 |
| SchI | GAGTC | 4 cut(s) | 660, 953, 1034, 1977 |
| ScrFI | CCNGG | 4 cut(s) | 575, 888, 1065, 1761 |
| SduI | GDGCHC | 1 cut(s) | 180 |
| SexAI | ACCWGGT | 1 cut(s) | 1063 |
| SfaNI | GCATC | 5 cut(s) | 112, 189, 1039, 1632, 1740 |
| SfcI | CTRYAG | 4 cut(s) | 472, 1131, 1480, 1816 |
| SfuI | TTCGAA | 1 cut(s) | 1170 |
| SinI | GGWCC | 2 cut(s) | 966, 1892 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 3 cut(s) | 173, 179, 607 |
| SmoI | CTYRAG | 3 cut(s) | 173, 179, 607 |
| SnaBI | TACGTA | 1 cut(s) | 1429 |
| SpeI | ACTAGT | 1 cut(s) | 1723 |
| SphI | GCATGC | 1 cut(s) | 397 |
| Sse9I | AATT | 7 cut(s) | 225, 418, 541, 691, 833, 1327, 1883 |
| SsiI | CCGC | 7 cut(s) | 29, 360, 468, 1175, 1379, 1572, 1890 |
| SspI | AATATT | 1 cut(s) | 1246 |
| SspMI | CTAG | 6 cut(s) | 408, 845, 1101, 1110, 1724, 1844 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StyD4I | CCNGG | 4 cut(s) | 573, 886, 1063, 1759 |
| StyI | CCWWGG | 4 cut(s) | 1085, 1207, 1676, 1977 |
| TaaI | ACNGT | 6 cut(s) | 250, 372, 1057, 1410, 1484, 1747 |
| TaiI | ACGT | 4 cut(s) | 790, 867, 1431, 1800 |
| TaqI | TCGA | 5 cut(s) | 621, 772, 1170, 1626, 1716 |
| TasI | AATT | 7 cut(s) | 225, 418, 541, 691, 833, 1327, 1883 |
| TatI | WGTACW | 3 cut(s) | 1282, 1362, 1484 |
| TfiI | GAWTC | 8 cut(s) | 86, 92, 341, 809, 1079, 1540, 1586, 1643 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TseFI | GTSAC | 8 cut(s) | 455, 564, 652, 1202, 1265, 1468, 1534, 1659 |
| TseI | GCWGC | 1 cut(s) | 596 |
| Tsp45I | GTSAC | 8 cut(s) | 455, 564, 652, 1202, 1265, 1468, 1534, 1659 |
| TspGWI | ACGGA | 5 cut(s) | 98, 226, 1322, 1887, 1955 |
| TspRI | CASTG | 1 cut(s) | 61 |
| VpaK11BI | GGWCC | 2 cut(s) | 966, 1892 |
| VspI | ATTAAT | 1 cut(s) | 1242 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 747, 1193 |
| XapI | RAATTY | 6 cut(s) | 225, 418, 541, 691, 833, 1883 |
| XceI | RCATGY | 2 cut(s) | 305, 397 |
| XmiI | GTMKAC | 3 cut(s) | 328, 356, 1765 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1284, 1961 |
| XspI | CTAG | 6 cut(s) | 408, 845, 1101, 1110, 1724, 1844 |
| ZrmI | AGTACT | 3 cut(s) | 1284, 1364, 1486 |