Rroxscaffold_2G00100820

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010142
Physical Location & Seq
Reverse (-)
22694045 .. 22700075
6031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100820.1

Sequence Viewer

Length: 1872 bp
ATGGCCGAGAGTGGCTCATCTCCATCCCAAAAACCCCTGCAACCCCCAAACCCCAATAGCATTGAAGCATCAACAGCAGCCAGCCCTAACATTATAATCACCCAAAACCCATCAAACCCTGCCTCAAACCCACCAATCCCATCCCCTCAAACTCTCTCCCAATCTCCTCAAATCTCATCCCCACCCCTCCCTCCTCTCCCCACCATCTCTCTCCCCCAGAACCAACAGCTTATTTCCCCCGCCGTCGGATTGGATTACACCCAGAAACCGAATCAGCAGCAGCAGCAGCCATTGGTGCAGCAACAAGTGCAGACTCAGAATGTAAACGTGAACGCCCTGTCGAGTTTCCAGCTGCAGCAGCAGAGCATGCAGCGATCTCCGTCGATGTCGCGGCTGAACCAAATTCAGCAGCAGAATCAGAACCAGAGCCAGCAGCAGCAGCATTTCGGCATGATGAGGCAGCAAGGCAATTTGTATAGCCAGGTCAATTTCGGAGGCTCCGGTGCGATTCAGCAGCAGAACCAGACTCAGCAGCAGCAAATTGGCGGGGCGTCCCGAGCTGCCCTGCTTGGCCAGAGTGGCCACTTGCCCATGCTGTCTGGTGCTGCCGCTGCCGCAGCTGCGCAATTCAGTATGCAGACGCAGCTGTTGGCTTCGCCGAGACAACAAGGTGGGTTAGTCCAAGGTACCCAATTTAGTTCTCCTGGACAATCTCTACAAGGAACACAAGCAATGGGTATGGGAATGATGAATTCCATGAATTTGACCCCACAACCAAGAGCTAATGGAGCCTTAGCTGCTGCTTATGCTCAGCGAATGAACCAGGGCCAACTTAGACAACAATTGTCCCAGCAAAGTTCGCTCGCCTCTCCGCAAAACTTGCCAAGAACATCCTCACTTGCATTTATGAACACTCAGCTATCTGGGCTGGCTCAGAATGGACAGCCAGCTATGATGCAGAATCCTTTATCACAACAGTGGTTGAAGCAAGCAGGCCCTGGCTCACCTTCATACCGCCTTCAACAACAGAGGCAGCAGGCCATCTTACAGCAGCAACTGGCTTCACCCACTCAGTTGCATCAACAGTCCATGTCCATGAAACAGCAAAAACAGTTACAGCAACAGCAGCAGCAGCAGCAGCAACAATTGGGGCTTCCTCAACTACAGCATCAACAACAGCAACAGCAGCAGCAAATACAGCAGCCACTACAACAACAATCACAGCAACAACAGCCCTTCAATCAACAACAGCAGCAACAGCAGCAGAATTCCCCAAGGATGCCTGTACCCGCAGGCCAGAAATCTCTTAGTTTAACAGGATCACAGCCTGATGCTACTGCATCTGGTACAACTACACCAGGAGGGAGTTCAAGCCAAGGAACAGAAGCAACTAATCAACTTCTTGGGAAGAGAAAGATGCAGGACTTAGTCTCACAGATTGATTCACAGGGAAGGTTGGATTCTGAAGTTGAAGATCTTCTTTTGGAGATTGCTGATGACTTCATCGATTCAGTGACTACATTTGCATGCAGTTTGGCTAAGCATAGAAAATCTTCAACTTTAGAGTCCAAGGATGTGTTGCTGCACTTAGAAAAAAATTGGCATTTGACAATTCCCGGATTTTCAAGTGAAGAGAGGAAGTACCAAAACAAATCTTTGTCAAGTGATGTACATAAGAAACGTTTAGATATGATACGGACGCTGATGGAATCATCGCACCTGGAAACAAATACTAATAATCCTAAGGAGGTGATCAGAGGGTATGGCAACCCAGTTGGTGCCAACCACTTGATAAGACCTTCCCTTGGTTCAGAACAGTTGGTTTCCCAAGCAACTGGTTCTCAGATGCTGCAGCAGATAACACGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

623

Amino Acids

68.16

Weight (kDa)

9.88

Isoelectric Point (pI)

75.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_20kDa PF03847 469 - 536 5.9e-32 Transcription initiation factor TFIID subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17440 AT1G17440
fragaria_vesca FvH4_6g34640 FvH4_6g34640
malus_domestica MD09G1184100.v1.1 MD17G1168400.v1.1
prunus_persica Prupe.3G042400_v2.0.a1
pyrus_communis pycom09g10180 pycom17g16450
rosa_chinensis RchiOBHm_Chr2g0145171
rosa_laevigata RLG00000020131
rosa_multiflora Rmu_sc0002506.1_g000036
rosa_roxburghii Rroxscaffold_2G00100820
rosa_rugosa Rorug02G0390800 Rorug02G0390800 Rorug02G0390900
rosa_samantha Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400
rosa_wichuraiana Rw2G036270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc16I TGCGCA 1 cut(s) 624
Acc65I GGTACC 1 cut(s) 686
AccB1I GGYRCC 2 cut(s) 686, 1778
AccII CGCG 1 cut(s) 391
AciI CCGC 8 cut(s) 240, 391, 546, 609, 615, 872, 1015, 1290
AclI AACGTT 1 cut(s) 1681
AclWI GGATC 1 cut(s) 1327
AcoI YGGCCR 3 cut(s) 3, 571, 580
AcsI RAATTY 4 cut(s) 402, 751, 760, 1267
AcuI CTGAAG 1 cut(s) 1485
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 5 cut(s) 688, 1287, 1348, 1643, 1671
AfiI CCNNNNNNNGG 2 cut(s) 245, 1805
AgsI TTSAA 8 cut(s) 65, 985, 1022, 1240, 1371, 1472, 1557, 1626
AjnI CCWGG 6 cut(s) 480, 703, 822, 997, 1357, 1719
AleI CACNNNNGTG 1 cut(s) 976
AluBI AGCT 9 cut(s) 229, 352, 560, 620, 646, 782, 797, 919, 950
AluI AGCT 9 cut(s) 229, 352, 560, 620, 646, 782, 797, 919, 950
Alw26I GTCTC 2 cut(s) 655, 1435
AlwI GGATC 1 cut(s) 1327
AlwNI CAGNNNCTG 3 cut(s) 998, 1057, 1849
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 7 cut(s) 3, 571, 580, 826, 994, 1038, 1294
ApoI RAATTY 4 cut(s) 402, 751, 760, 1267
Asp700I GAANNNNTTC 2 cut(s) 1476, 1552
Asp718I GGTACC 1 cut(s) 686
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 826, 995
AsuC2I CCSGG 1 cut(s) 1617
AsuHPI GGTGA 4 cut(s) 91, 996, 1056, 1762
AvaI CYCGRG 1 cut(s) 555
AxyI CCTNAGG 1 cut(s) 1743
BalI TGGCCA 2 cut(s) 573, 582
BanI GGYRCC 2 cut(s) 686, 1778
BccI CCATC 6 cut(s) 31, 118, 148, 212, 1049, 1699
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 6 cut(s) 482, 705, 824, 999, 1359, 1721
BclI TGATCA 1 cut(s) 1752
BcnI CCSGG 1 cut(s) 1617
BcoDI GTCTC 2 cut(s) 655, 1435
BfmI CTRYAG 3 cut(s) 353, 1163, 1850
BglI GCCNNNNNGGC 1 cut(s) 579
BglII AGATCT 1 cut(s) 1474
BlpI GCTNAGC 2 cut(s) 810, 1539
Bme1390I CCNGG 7 cut(s) 482, 705, 824, 999, 1359, 1617, 1721
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 2 cut(s) 826, 995
BmiI GGNNCC 4 cut(s) 499, 688, 790, 1780
BmrFI CCNGG 7 cut(s) 482, 705, 824, 999, 1359, 1617, 1721
BmrI ACTGGG 1 cut(s) 1766
BmsI GCATC 9 cut(s) 77, 945, 1087, 1177, 1269, 1321, 1349, 1407, 1836
BmuI ACTGGG 1 cut(s) 1766
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 793
Bpu1102I GCTNAGC 2 cut(s) 810, 1539
BpuMI CCSGG 1 cut(s) 1617
Bsa29I ATCGAT 1 cut(s) 1506
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 7 cut(s) 682, 823, 997, 1274, 1375, 1569, 1804
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 1805
Bse1I ACTGG 3 cut(s) 1062, 1772, 1840
Bse21I CCTNAGG 1 cut(s) 1743
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 6 cut(s) 482, 705, 824, 999, 1359, 1721
BseCI ATCGAT 1 cut(s) 1506
BseDI CCNNGG 7 cut(s) 682, 823, 997, 1274, 1375, 1569, 1804
BseGI GGATG 6 cut(s) 23, 140, 176, 890, 1284, 1579
BseLI CCNNNNNNNGG 2 cut(s) 245, 1805
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 7 cut(s) 329, 542, 824, 929, 947, 1085, 1856
BseNI ACTGG 3 cut(s) 1062, 1772, 1840
BseRI GAGGAG 2 cut(s) 156, 183
BseYI CCCAGC 1 cut(s) 849
BsgI GTGCAG 3 cut(s) 317, 329, 1568
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 7 cut(s) 5, 573, 582, 828, 996, 1040, 1296
BshNI GGYRCC 2 cut(s) 686, 1778
BshVI ATCGAT 1 cut(s) 1506
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 2 cut(s) 501, 1617
BslFI GGGAC 2 cut(s) 538, 832
BslI CCNNNNNNNGG 2 cut(s) 245, 1805
BsmAI GTCTC 2 cut(s) 655, 1435
BsmFI GGGAC 2 cut(s) 538, 832
BsnI GGCC 7 cut(s) 5, 573, 582, 828, 996, 1040, 1296
BsoBI CYCGRG 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 1669
Bsp143I GATC 4 cut(s) 374, 1319, 1474, 1752
Bsp1720I GCTNAGC 2 cut(s) 810, 1539
BspACI CCGC 8 cut(s) 240, 391, 546, 609, 615, 872, 1015, 1290
BspANI GGCC 7 cut(s) 5, 573, 582, 828, 996, 1040, 1296
BspCNI CTCAG 7 cut(s) 328, 541, 823, 928, 946, 1084, 1855
BspDI ATCGAT 1 cut(s) 1506
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 4 cut(s) 499, 688, 790, 1780
BspMAI CTGCAG 2 cut(s) 357, 1854
BspPI GGATC 1 cut(s) 1327
BspT107I GGYRCC 2 cut(s) 686, 1778
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 1669
BsrI ACTGG 3 cut(s) 1062, 1772, 1840
BssECI CCNNGG 7 cut(s) 682, 823, 997, 1274, 1375, 1569, 1804
BssMI GATC 4 cut(s) 374, 1319, 1474, 1752
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 5 cut(s) 682, 1274, 1375, 1569, 1804
Bst2UI CCWGG 6 cut(s) 482, 705, 824, 999, 1359, 1721
Bst4CI ACNGT 5 cut(s) 978, 1086, 1113, 1818, 1866
Bst6I CTCTTC 2 cut(s) 1403, 1626
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 3 cut(s) 307, 367, 880
BstAUI TGTACA 1 cut(s) 1669
BstF5I GGATG 6 cut(s) 23, 140, 176, 890, 1284, 1579
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 4 cut(s) 377, 1322, 1477, 1755
BstMAI GTCTC 2 cut(s) 655, 1435
BstMBI GATC 4 cut(s) 374, 1319, 1474, 1752
BstNI CCWGG 6 cut(s) 482, 705, 824, 999, 1359, 1721
BstNSI RCATGY 2 cut(s) 370, 1530
BstSCI CCNGG 7 cut(s) 480, 703, 822, 997, 1357, 1615, 1719
BstSFI CTRYAG 3 cut(s) 353, 1163, 1850
BstUI CGCG 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 1474
BstXI CCANNNNNNTGG 1 cut(s) 1835
BstYI RGATCY 1 cut(s) 1474
Bsu15I ATCGAT 1 cut(s) 1506
Bsu36I CCTNAGG 1 cut(s) 1743
BsuRI GGCC 7 cut(s) 5, 573, 582, 828, 996, 1040, 1296
BsuTUI ATCGAT 1 cut(s) 1506
BtgZI GCGATG 1 cut(s) 1698
BtsCI GGATG 6 cut(s) 23, 140, 176, 890, 1284, 1579
BtsIMutI CAGTG 2 cut(s) 983, 1518
CaiI CAGNNNCTG 3 cut(s) 998, 1057, 1849
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 826, 995
ClaI ATCGAT 1 cut(s) 1506
CseI GACGC 3 cut(s) 540, 649, 1708
Csp6I GTAC 5 cut(s) 687, 1286, 1347, 1642, 1670
CviAII CATG 7 cut(s) 367, 451, 592, 757, 1090, 1096, 1527
CviQI GTAC 5 cut(s) 687, 1286, 1347, 1642, 1670
DpnI GATC 4 cut(s) 376, 1321, 1476, 1754
DpnII GATC 4 cut(s) 374, 1319, 1474, 1752
EaeI YGGCCR 3 cut(s) 3, 571, 580
Eam1104I CTCTTC 2 cut(s) 1403, 1626
EarI CTCTTC 2 cut(s) 1403, 1626
Eco130I CCWWGG 5 cut(s) 682, 1274, 1375, 1569, 1804
Eco57I CTGAAG 1 cut(s) 1485
Eco81I CCTNAGG 1 cut(s) 1743
Eco88I CYCGRG 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 995
EcoRI GAATTC 2 cut(s) 751, 1267
EcoRII CCWGG 6 cut(s) 480, 703, 822, 997, 1357, 1719
EcoT14I CCWWGG 5 cut(s) 682, 1274, 1375, 1569, 1804
ErhI CCWWGG 5 cut(s) 682, 1274, 1375, 1569, 1804
FaeI CATG 7 cut(s) 370, 454, 595, 760, 1093, 1099, 1530
FalI AAGNNNNNCTT 2 cut(s) 1464, 1496
FaqI GGGAC 2 cut(s) 538, 832
FatI CATG 7 cut(s) 366, 450, 591, 756, 1089, 1095, 1526
FauI CCCGC 3 cut(s) 247, 539, 1297
FbaI TGATCA 1 cut(s) 1752
FokI GGATG 6 cut(s) 10, 127, 163, 877, 1291, 1586
FspI TGCGCA 1 cut(s) 624
GlaI GCGC 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 853
HaeIII GGCC 7 cut(s) 5, 573, 582, 828, 996, 1040, 1296
HapII CCGG 2 cut(s) 501, 1617
HgaI GACGC 3 cut(s) 540, 649, 1708
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 7 cut(s) 370, 454, 595, 760, 1093, 1099, 1530
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HpaII CCGG 2 cut(s) 501, 1617
HphI GGTGA 4 cut(s) 91, 996, 1056, 1762
Hpy166II GTNNAC 2 cut(s) 325, 331
Hpy188I TCNGA 9 cut(s) 248, 318, 420, 494, 936, 1465, 1757, 1813, 1845
Hpy188III TCNNGA 1 cut(s) 555
Hpy8I GTNNAC 2 cut(s) 325, 331
Hpy99I CGWCG 2 cut(s) 248, 385
HpyAV CCTTC 5 cut(s) 1017, 1028, 1246, 1446, 1809
HpyCH4III ACNGT 5 cut(s) 978, 1086, 1113, 1818, 1866
HpyCH4IV ACGT 2 cut(s) 327, 1681
HpySE526I ACGT 2 cut(s) 327, 1681
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 7 cut(s) 370, 454, 595, 760, 1093, 1099, 1530
HspAI GCGC 1 cut(s) 623
KpnI GGTACC 1 cut(s) 690
Ksp22I TGATCA 1 cut(s) 1752
Kzo9I GATC 4 cut(s) 374, 1319, 1474, 1752
LmnI GCTCC 2 cut(s) 503, 788
LweI GCATC 9 cut(s) 77, 945, 1087, 1177, 1269, 1321, 1349, 1407, 1836
MaeII ACGT 2 cut(s) 327, 1681
MaeIII GTNAC 2 cut(s) 1113, 1513
MalI GATC 4 cut(s) 376, 1321, 1476, 1754
MboI GATC 4 cut(s) 374, 1319, 1474, 1752
MboII GAAGA 5 cut(s) 1420, 1469, 1484, 1545, 1643
MfeI CAATTG 2 cut(s) 842, 1145
MflI RGATCY 1 cut(s) 1474
MlsI TGGCCA 2 cut(s) 573, 582
MluNI TGGCCA 2 cut(s) 573, 582
MlyI GAGTC 3 cut(s) 307, 520, 1574
MmeI TCCRAC 2 cut(s) 226, 1437
Mox20I TGGCCA 2 cut(s) 573, 582
MroXI GAANNNNTTC 2 cut(s) 1476, 1552
MscI TGGCCA 2 cut(s) 573, 582
MseI TTAA 1 cut(s) 1313
MslI CAYNNNNRTG 3 cut(s) 976, 1094, 1525
Msp20I TGGCCA 2 cut(s) 573, 582
MspA1I CMGCKG 4 cut(s) 352, 611, 620, 646
MspI CCGG 2 cut(s) 501, 1617
MspR9I CCNGG 7 cut(s) 482, 705, 824, 999, 1359, 1617, 1721
MunI CAATTG 2 cut(s) 842, 1145
MvaI CCWGG 6 cut(s) 482, 705, 824, 999, 1359, 1721
MvnI CGCG 1 cut(s) 391
NciI CCSGG 1 cut(s) 1617
NdeII GATC 4 cut(s) 374, 1319, 1474, 1752
NlaIII CATG 7 cut(s) 370, 454, 595, 760, 1093, 1099, 1530
NlaIV GGNNCC 4 cut(s) 499, 688, 790, 1780
NmeAIII GCCGAG 2 cut(s) 31, 684
NmuCI GTSAC 1 cut(s) 1513
NsbI TGCGCA 1 cut(s) 624
NspI RCATGY 2 cut(s) 370, 1530
OliI CACNNNNGTG 1 cut(s) 976
PaeI GCATGC 2 cut(s) 370, 1530
PdmI GAANNNNTTC 2 cut(s) 1476, 1552
PfeI GAWTC 8 cut(s) 271, 415, 508, 961, 1442, 1460, 1508, 1709
PflFI GACNNNGTC 1 cut(s) 1427
PfoI TCCNGGA 2 cut(s) 703, 1615
PleI GAGTC 3 cut(s) 307, 520, 1573
PpsI GAGTC 3 cut(s) 307, 520, 1573
PsiI TTATAA 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 1681
Psp6I CCWGG 6 cut(s) 480, 703, 822, 997, 1357, 1719
PspFI CCCAGC 1 cut(s) 849
PspGI CCWGG 6 cut(s) 480, 703, 822, 997, 1357, 1719
PspN4I GGNNCC 4 cut(s) 499, 688, 790, 1780
PspPI GGNCC 2 cut(s) 826, 995
PstI CTGCAG 2 cut(s) 357, 1854
PstNI CAGNNNCTG 3 cut(s) 998, 1057, 1849
PsuI RGATCY 1 cut(s) 1474
PsyI GACNNNGTC 1 cut(s) 1427
PvuII CAGCTG 3 cut(s) 352, 620, 646
RsaI GTAC 5 cut(s) 688, 1287, 1348, 1643, 1671
RsaNI GTAC 5 cut(s) 687, 1286, 1347, 1642, 1670
RseI CAYNNNNRTG 3 cut(s) 976, 1094, 1525
SaqAI TTAA 1 cut(s) 1313
Sau3AI GATC 4 cut(s) 374, 1319, 1474, 1752
Sau96I GGNCC 2 cut(s) 826, 995
SchI GAGTC 3 cut(s) 307, 520, 1574
ScrFI CCNGG 7 cut(s) 482, 705, 824, 999, 1359, 1617, 1721
SfaNI GCATC 9 cut(s) 77, 945, 1087, 1177, 1269, 1321, 1349, 1407, 1836
SfcI CTRYAG 3 cut(s) 353, 1163, 1850
SfiI GGCCNNNNNGGCC 1 cut(s) 579
SmiMI CAYNNNNRTG 3 cut(s) 976, 1094, 1525
SphI GCATGC 2 cut(s) 370, 1530
SsiI CCGC 8 cut(s) 240, 391, 546, 609, 615, 872, 1015, 1290
StyD4I CCNGG 7 cut(s) 480, 703, 822, 997, 1357, 1615, 1719
StyI CCWWGG 5 cut(s) 682, 1274, 1375, 1569, 1804
TaaI ACNGT 5 cut(s) 978, 1086, 1113, 1818, 1866
TaiI ACGT 2 cut(s) 330, 1684
TaqI TCGA 3 cut(s) 341, 383, 1506
TatI WGTACW 1 cut(s) 1669
TauI GCSGC 3 cut(s) 394, 611, 617
TfiI GAWTC 8 cut(s) 271, 415, 508, 961, 1442, 1460, 1508, 1709
Tru1I TTAA 1 cut(s) 1313
Tru9I TTAA 1 cut(s) 1313
TscAI CASTG 2 cut(s) 983, 1518
TseFI GTSAC 1 cut(s) 1513
Tsp45I GTSAC 1 cut(s) 1513
TspDTI ATGAA 7 cut(s) 764, 773, 833, 923, 999, 1112, 1492
TspGWI ACGGA 2 cut(s) 369, 1711
TspRI CASTG 2 cut(s) 983, 1518
Tth111I GACNNNGTC 1 cut(s) 1427
XapI RAATTY 4 cut(s) 402, 751, 760, 1267
XceI RCATGY 2 cut(s) 370, 1530
XmnI GAANNNNTTC 2 cut(s) 1476, 1552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.