Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005600

Physical Location & Seq

Genomic Coordinates Forward (+)

30178716 .. 30185128

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1237900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGGCTGCAAGGAACTTGGAGAAGATGGCTTCAATTGACGCCCAGCTGAGGCTTTTGGCACCTGGGAAGGTCTCTGAGGATGACAAACTGGTTGAGTACGATGCTCTGCTGTTGGATCGCTTCCTTGATATTCTTCAGGATTTACATGGAGAGAGTCTCAGAGAAACGGTGCAAGATTGTTATGAGCTTTCCGCGGAATATGAAAGAAAGCAGGACCCTCAAAAGTTGGAGGAACTCGGGAAAATGCTAACGAGTTTGGATCCCGGGGACTCCATTGTCATTGCTAAATCCTTTTCTCACATGCTTAACTTGGCAAATTTGGCCGAGGAAGTTCAGATTGCGTACCGGAGGAGGATCAAGTTGAAGAAGAAGGGAGATTTTGCTGATGAGGCGTCGGCTACTACGGAGTCAGACATTGAAGAGACTCTCAAGAGGCTTGTGGGGGACCTGAAAAAGTCCCCAGAAGAAGTTTTTGATGCCTTGAAGAACCAGACTGTAGATTTAGTTCTGACTGCACATCCTACTCAGTCTGTTCGCAGGTCTTTGCTTCAAAAGCATGCAAGGGTAAGAAATTGTTTGACGCAGTTGTATGCTAAGGACATTACGCCTGATGATAAGCAGGAACTCGATGAGGCTTTACAAAGGGAGATTCAAGCTGCATTTCGTACAGATGAAATCCGAAGGACTCCTCCAACCCCTCAAGATGAGATGAGGGCAGGAATGAGCTACTTCCATGAGACAATTTGGAAAGGTGTACCAAAATTCTTACGTCGTGTTGACACTGCTTTGAAGAACATAGGGATAAACGAACGTGTTCCTTACAATGCCCCTCTCATTCAGTTTTCTTCTTGGATGGGTGGGGATCGTGATGGAAACCCTAGGGTCACTCCTGAAGTTACTCGGGATGTATGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTTCTCCCAGATAGAGGATCTTATGTTTGAGTTATCTATGTGGCGATGCAATGATGAGCTTCGCACTCGTGCTGATGAACTTCATAGGTCTTCAAAGAAGGATGCAAAACAGTACATAGAGTTTTGGAAAAAAATTCCTCCAAATGAGCCTTATCGTGTTATTCTTGGTGATGTAAGAGACAAGCTTTACAATACGCGTGAACGTGCTCGCCAGTTATTAGCCAATGGAGTCTCTGACATTCATGAGGACACAACGTTTACCAATGTTGAACAGTTTCTGGAGCCTCTCGAACTTTGTTACCGGTCACTCTGCTCCTGTGGCGATCGAGTAATTGCTGATGGAAGCCTTCTTGATTTCTTACGACAAGTTTCTACTTTTGGGCTGTCTCTTGTGAGACTAGACATACGACAAGAATCAGACAGGCACACTGATGTCATCAATGCTATAACAAAGCACCTGGAGATAGGGTCTTATCGAGAATGGTCTGAGGAGCGTCGGCAAGAATGGCTCTTGTCTGAGCTTCATGGCAAGCGCCCCCTTTTTGACCGTGATGTTCCCAAGACTGAAGAAATTGCTGATGTGCTGGAAACGTTCCATGTCATTTCAGAACTTCCCTCAGACAATTTTGGTGCTTATATTATATCAATGGCAACAGCCCCATCTGATGTTCTCGCTGTTGAGCTTTTACAACGTGAATGTGGTGTGAAGAAGCCACTGAGGGTTGTTCCATTGTTTGAGAAGCTTGCTGATCTTGAGGCTGCTCCTGCTGCTGTGGCTCGTCTCTTTTCAATAGACTGGTACAAAAACCAGATCAATGGGAAGCAAGAAGTAATGATAGGGTACTCAGATTCCGGGAAGGATGCTGGTCGTTTATCTGCAGCATGGCAGTTATACAAGGCTCAGGAAGAGCTCATAAAGGTTGCAAAACAATTTGGGGTTAAGCTTACGATGTTTCATGGTCGAGGTGGAACAGTTGGAAGAGGAGGGGGCCCCACCCATCTTGCTATATTGTCTCAGCCACCCGACACTATTCATGGTTCACTTCGTGTTACAGTTCAAGGTGAAGTTATTGAACAATCATTTGGGGAGGAACACTTGTGCTTTAGAACACTCCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGCATCCTCCAGTCTCCCCAAAGCCAGAATGGCGTGCACTCATGGATGAAATGGCCGTCATTGCAACAAAGGAATATCGTTCAATAGTTTTCCAGGAGCCCCGTTTTGTGGAATACTTTCGCCTCGCAACACCGGAGTTGGAGTATGGTCGAATGAACATTGGGAGTCGTCCTTCAAAACGAAAGCCCAGCGGAGGCATTGAATCACTTCGTGCAATCCCATGGATCTTTGCTTGGACCCAGACAAGATTTCACCTACCAGTGTGGCTTGGCTTCGGGGCAGCATTTAAGCATGCTATTGAGAAGGATGCAAAGAATCTTCAAATGCTCCAGGAGATGTATAACCACTGGCCTTTTTTCAGAGTCACAATTGATTTAATTGAGATGGTGTTTGCCAAGGGCGATCCGGGTATTGCATCTCTCTATGACAAGCTTCTTGTGTCAGAAGACCTATGGTCATTTGGTGACCGATTGAGGTCCAACTATGAGGAAACTAAGCGCCTCGTCCTCCAGGTTGCTGGACATAGGGCTCTTCTGGAAGGAGATCCTTACTTGAGGCAGCGACTCCTCCTTCGTGATTCATATATCACGACACTTAACGTGTGCCAAGCCTATACACTGAAGCAGATTCGTGATCCAAACTACCATGTTAAAGTAAGGCCACACTTGTCAAAGGAGTACATGGAAACAACAAGCAAGCCGGCAGCGGAGCTTGTGAAACTCAATCCAACGAGCGAGTATGCTCCTGGTCTAGAGGACACGCTTATTCTGACCATGAAGGGTATTGCTGCTGGCATGCAGAACACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

968

Amino Acids

110.54

Weight (kDa)

6.05

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 967	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42600 AT2G42600 AT2G42600
fragaria_vesca	FvH4_6g27390 FvH4_6g27390 FvH4_6g27390 FvH4_6g33320
malus_domestica	MD09G1237900.v1.1 MD17G1230800.v1.1
prunus_persica	Prupe.3G118300_v2.0.a1
pyrus_communis	pycom09g15640 pycom17g23400
rosa_chinensis	RchiOBHm_Chr2g0090101 RchiOBHm_Chr2g0129661
rosa_laevigata	RLG00000016085 RLG00000019094
rosa_multiflora	Rmu_sc0008968.1_g000006 Rmu_sc0009263.1_g000005 Rmu_sc0020548.1_g000003
rosa_roxburghii	Rroxscaffold_2G00114470
rosa_rugosa	Rorug02G0005300 Rorug02G0288200
rosa_samantha	Rh2AG339500 Rh2BG348300 Rh2CG326900 Rh2DG366400
rosa_wichuraiana	Rw2G004560 Rw2G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	58
AccII	CGCG	2 cut(s)	194, 1141
AciI	CCGC	4 cut(s)	192, 194, 2283, 2798
AclI	AACGTT	2 cut(s)	1199, 1535
AcoI	YGGCCR	2 cut(s)	321, 2145
AcsI	RAATTY	3 cut(s)	316, 761, 1077
AcuI	CTGAAG	4 cut(s)	119, 912, 1530, 2732
AcyI	GRCGYC	2 cut(s)	39, 392
AdeI	CACNNNGTG	2 cut(s)	1991, 2303
AfaI	GTAC	8 cut(s)	98, 344, 667, 756, 1058, 1745, 1787, 2771
AfiI	CCNNNNNNNGG	4 cut(s)	48, 958, 2200, 2285
AflIII	ACRYGT	3 cut(s)	811, 1139, 2691
AgeI	ACCGGT	2 cut(s)	1245, 2897
AhdI	GACNNNNNGTC	1 cut(s)	2545
AjnI	CCWGG	6 cut(s)	61, 1401, 2184, 2421, 2601, 2836
AjuI	GAANNNNNNNTTGG	2 cut(s)	2010, 2042
Alw21I	GWGCWC	3 cut(s)	1153, 1857, 2131
Alw44I	GTGCAC	1 cut(s)	2127
AlwNI	CAGNNNCTG	1 cut(s)	1222
Ama87I	CYCGRG	3 cut(s)	236, 263, 900
AoxI	GGCC	5 cut(s)	321, 1933, 2145, 2441, 2750
ApaI	GGGCCC	1 cut(s)	1937
ApaLI	GTGCAC	1 cut(s)	2127
ApoI	RAATTY	3 cut(s)	316, 761, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	2646, 2678
AsiGI	ACCGGT	2 cut(s)	1245, 2897
Asp700I	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	2 cut(s)	1479, 2592
AspS9I	GGNCC	6 cut(s)	214, 445, 1933, 1934, 2328, 2568
AsuC2I	CCSGG	4 cut(s)	264, 265, 1798, 2499
AsuHPI	GGTGA	4 cut(s)	1124, 2018, 2336, 2567
AvaI	CYCGRG	3 cut(s)	236, 263, 900
AvaII	GGWCC	4 cut(s)	214, 445, 2328, 2568
AvrII	CCTAGG	1 cut(s)	878
BaeGI	GKGCMC	2 cut(s)	1937, 2131
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	4 cut(s)	1857, 1937, 2193, 2623
BauI	CACGAG	1 cut(s)	1011
BbsI	GAAGAC	2 cut(s)	1026, 2544
Bbv12I	GWGCWC	3 cut(s)	1153, 1857, 2131
BbvCI	CCTCAGC	1 cut(s)	47
BccI	CCATC	8 cut(s)	19, 847, 863, 922, 1277, 1612, 1950, 2470
BceAI	ACGGC	1 cut(s)	2132
BciT130I	CCWGG	6 cut(s)	63, 1403, 2186, 2423, 2603, 2838
BcnI	CCSGG	4 cut(s)	264, 265, 1798, 2499
BfaI	CTAG	4 cut(s)	879, 921, 1343, 2843
BfmI	CTRYAG	2 cut(s)	495, 1821
BfoI	RGCGCY	2 cut(s)	1480, 2593
BfuAI	ACCTGC	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	2122
BlnI	CCTAGG	1 cut(s)	878
Bme18I	GGWCC	4 cut(s)	214, 445, 2328, 2568
BmeRI	GACNNNNNGTC	1 cut(s)	2545
BmeT110I	CYCGRG	3 cut(s)	236, 263, 900
BmgT120I	GGNCC	6 cut(s)	214, 445, 1933, 1934, 2328, 2568
BmsI	GCATC	8 cut(s)	91, 466, 980, 1036, 1795, 2104, 2389, 2516
BpiI	GAAGAC	2 cut(s)	1026, 2544
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	6 cut(s)	1244, 1424, 2042, 2085, 2405, 2585
Bpu10I	CCTNAGC	3 cut(s)	47, 594, 1845
BpuEI	CTTGAG	5 cut(s)	413, 684, 1718, 2102, 2665
BpuMI	CCSGG	4 cut(s)	264, 265, 1798, 2499
BsaHI	GRCGYC	2 cut(s)	39, 392
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	8 cut(s)	62, 192, 263, 264, 324, 878, 2312, 2487
BsaWI	WCCGGW	4 cut(s)	345, 1245, 2224, 2897
BsaXI	ACNNNNNCTCC	4 cut(s)	1397, 1427, 2219, 2249
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 958, 2200, 2285
Bse118I	RCCGGY	3 cut(s)	1245, 2791, 2897
Bse1I	ACTGG	6 cut(s)	93, 1156, 1745, 2102, 2351, 2444
Bse3DI	GCAATG	3 cut(s)	279, 1000, 2151
BseBI	CCWGG	6 cut(s)	63, 1403, 2186, 2423, 2603, 2838
BseDI	CCNNGG	8 cut(s)	62, 192, 263, 264, 324, 878, 2312, 2487
BseGI	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1810, 2095, 2143, 2404
BseLI	CCNNNNNNNGG	4 cut(s)	48, 958, 2200, 2285
BseMI	GCAATG	3 cut(s)	279, 1000, 2151
BseNI	ACTGG	6 cut(s)	93, 1156, 1745, 2102, 2351, 2444
BseRI	GAGGAG	5 cut(s)	364, 678, 1448, 1941, 2648
BseSI	GKGCMC	2 cut(s)	1937, 2131
BseYI	CCCAGC	2 cut(s)	42, 2279
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	2 cut(s)	194, 1141
Bsh1285I	CGRYCG	1 cut(s)	1270
BshFI	GGCC	5 cut(s)	323, 1935, 2147, 2443, 2752
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	2 cut(s)	1245, 2897
BsiEI	CGRYCG	1 cut(s)	1270
BsiHKAI	GWGCWC	3 cut(s)	1153, 1857, 2131
BsiHKCI	CYCGRG	3 cut(s)	236, 263, 900
BsiSI	CCGG	8 cut(s)	264, 346, 1246, 1797, 2225, 2498, 2792, 2898
BslFI	GGGAC	3 cut(s)	281, 442, 458
BslI	CCNNNNNNNGG	4 cut(s)	48, 958, 2200, 2285
BsmBI	CGTCTC	1 cut(s)	1730
BsmFI	GGGAC	3 cut(s)	281, 442, 458
BsmI	GAATGC	1 cut(s)	2097
BsnI	GGCC	5 cut(s)	323, 1935, 2147, 2443, 2752
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	3 cut(s)	236, 263, 900
Bsp120I	GGGCCC	1 cut(s)	1933
Bsp1286I	GDGCHC	6 cut(s)	1153, 1857, 1937, 2131, 2193, 2623
Bsp19I	CCATGG	1 cut(s)	2312
BspACI	CCGC	4 cut(s)	192, 194, 2283, 2798
BspANI	GGCC	5 cut(s)	323, 1935, 2147, 2443, 2752
BspFNI	CGCG	2 cut(s)	194, 1141
BspHI	TCATGA	1 cut(s)	1186
BspMAI	CTGCAG	1 cut(s)	1825
BspMI	ACCTGC	1 cut(s)	528
BspQI	GCTCTTC	2 cut(s)	1845, 2628
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	279, 1000, 2151
BsrFI	RCCGGY	3 cut(s)	1245, 2791, 2897
BsrI	ACTGG	6 cut(s)	93, 1156, 1745, 2102, 2351, 2444
BssAI	RCCGGY	3 cut(s)	1245, 2791, 2897
BssECI	CCNNGG	8 cut(s)	62, 192, 263, 264, 324, 878, 2312, 2487
BssNI	GRCGYC	2 cut(s)	39, 392
BssSI	CACGAG	1 cut(s)	1011
BssT1I	CCWWGG	3 cut(s)	878, 2312, 2487
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	6 cut(s)	63, 1403, 2186, 2423, 2603, 2838
Bst4CI	ACNGT	7 cut(s)	169, 496, 1056, 1218, 1493, 1918, 1999
Bst6I	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
BstACI	GRCGYC	2 cut(s)	39, 392
BstAPI	GCANNNNNTGC	1 cut(s)	2092
BstDSI	CCRYGG	2 cut(s)	192, 2312
BstEII	GGTNACC	1 cut(s)	2555
BstF5I	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1810, 2095, 2143, 2404
BstFNI	CGCG	2 cut(s)	194, 1141
BstH2I	RGCGCY	2 cut(s)	1480, 2593
BstHHI	GCGC	2 cut(s)	1479, 2592
BstMCI	CGRYCG	1 cut(s)	1270
BstNI	CCWGG	6 cut(s)	63, 1403, 2186, 2423, 2603, 2838
BstNSI	RCATGY	4 cut(s)	304, 560, 2387, 2890
BstPI	GGTNACC	1 cut(s)	2555
BstSFI	CTRYAG	2 cut(s)	495, 1821
BstSLI	GKGCMC	2 cut(s)	1937, 2131
BstUI	CGCG	2 cut(s)	194, 1141
BstV2I	GAAGAC	2 cut(s)	1026, 2544
BstX2I	RGATCY	4 cut(s)	259, 961, 2316, 2635
BstXI	CCANNNNNNTGG	2 cut(s)	1760, 2609
BstYI	RGATCY	4 cut(s)	259, 961, 2316, 2635
BsuRI	GGCC	5 cut(s)	323, 1935, 2147, 2443, 2752
BtgI	CCRYGG	2 cut(s)	192, 2312
BtgZI	GCGATG	1 cut(s)	1003
BtsCI	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1810, 2095, 2143, 2404
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	6 cut(s)	780, 1371, 1658, 2358, 2437, 2708
BveI	ACCTGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	1222
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	2 cut(s)	1479, 2592
Cfr10I	RCCGGY	3 cut(s)	1245, 2791, 2897
Cfr13I	GGNCC	6 cut(s)	214, 445, 1933, 1934, 2328, 2568
Cfr42I	CCGCGG	1 cut(s)	195
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	4 cut(s)	47, 381, 589, 1427
Csp6I	GTAC	8 cut(s)	97, 343, 666, 755, 1057, 1744, 1786, 2770
CspAI	ACCGGT	2 cut(s)	1245, 2897
CspCI	CAANNNNNGTGG	2 cut(s)	1927, 1962
CviQI	GTAC	8 cut(s)	97, 343, 666, 755, 1057, 1744, 1786, 2770
DraIII	CACNNNGTG	2 cut(s)	1991, 2303
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	2545
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	321, 2145
Eam1104I	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
Eam1105I	GACNNNNNGTC	1 cut(s)	2545
EarI	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
Ecl136II	GAGCTC	1 cut(s)	1855
Eco130I	CCWWGG	3 cut(s)	878, 2312, 2487
Eco24I	GRGCYC	4 cut(s)	1857, 1937, 2193, 2623
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	4 cut(s)	214, 445, 2328, 2568
Eco53kI	GAGCTC	1 cut(s)	1855
Eco57I	CTGAAG	4 cut(s)	119, 912, 1530, 2732
Eco88I	CYCGRG	3 cut(s)	236, 263, 900
Eco91I	GGTNACC	1 cut(s)	2555
EcoICRI	GAGCTC	1 cut(s)	1855
EcoO109I	RGGNCCY	4 cut(s)	214, 445, 1933, 1934
EcoO65I	GGTNACC	1 cut(s)	2555
EcoRII	CCWGG	6 cut(s)	61, 1401, 2184, 2421, 2601, 2836
EcoT14I	CCWWGG	3 cut(s)	878, 2312, 2487
EcoT22I	ATGCAT	1 cut(s)	2097
EcoT38I	GRGCYC	4 cut(s)	1857, 1937, 2193, 2623
ErhI	CCWWGG	3 cut(s)	878, 2312, 2487
Esp3I	CGTCTC	1 cut(s)	1730
FaqI	GGGAC	3 cut(s)	281, 442, 458
FokI	GGATG	9 cut(s)	92, 504, 865, 917, 1058, 1817, 2082, 2150, 2411
FriOI	GRGCYC	4 cut(s)	1857, 1937, 2193, 2623
FspBI	CTAG	4 cut(s)	879, 921, 1343, 2843
GlaI	GCGC	2 cut(s)	1478, 2591
GsaI	CCCAGC	2 cut(s)	46, 2283
GsuI	CTGGAG	6 cut(s)	1244, 1424, 2042, 2085, 2405, 2585
HaeII	RGCGCY	2 cut(s)	1480, 2593
HaeIII	GGCC	5 cut(s)	323, 1935, 2147, 2443, 2752
HapII	CCGG	8 cut(s)	264, 346, 1246, 1797, 2225, 2498, 2792, 2898
HgaI	GACGC	4 cut(s)	47, 381, 589, 1427
HhaI	GCGC	2 cut(s)	1479, 2592
Hin1I	GRCGYC	2 cut(s)	39, 392
Hin6I	GCGC	2 cut(s)	1477, 2590
HinP1I	GCGC	2 cut(s)	1477, 2590
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	4 cut(s)	1127, 1685, 1886, 2522
HpaII	CCGG	8 cut(s)	264, 346, 1246, 1797, 2225, 2498, 2792, 2898
HphI	GGTGA	4 cut(s)	1124, 2018, 2336, 2567
Hpy166II	GTNNAC	6 cut(s)	755, 778, 1145, 1203, 1985, 2129
Hpy8I	GTNNAC	6 cut(s)	755, 778, 1145, 1203, 1985, 2129
Hpy99I	CGWCG	3 cut(s)	397, 774, 1443
HpyCH4III	ACNGT	7 cut(s)	169, 496, 1056, 1218, 1493, 1918, 1999
HpyCH4IV	ACGT	7 cut(s)	769, 811, 1147, 1199, 1535, 1636, 2691
HpySE526I	ACGT	7 cut(s)	769, 811, 1147, 1199, 1535, 1636, 2691
Hsp92I	GRCGYC	2 cut(s)	39, 392
HspAI	GCGC	2 cut(s)	1477, 2590
KroI	GCCGGC	1 cut(s)	2791
KroNI	GCCGGC	1 cut(s)	2793
KspI	CCGCGG	1 cut(s)	195
LguI	GCTCTTC	2 cut(s)	1845, 2628
LmnI	GCTCC	8 cut(s)	1225, 1262, 1435, 1711, 2188, 2424, 2800, 2839
LweI	GCATC	8 cut(s)	91, 466, 980, 1036, 1795, 2104, 2389, 2516
MaeI	CTAG	4 cut(s)	879, 921, 1343, 2843
MaeII	ACGT	7 cut(s)	769, 811, 1147, 1199, 1535, 1636, 2691
MaeIII	GTNAC	7 cut(s)	883, 895, 1241, 1248, 1993, 2455, 2555
MfeI	CAATTG	2 cut(s)	33, 2460
MflI	RGATCY	4 cut(s)	259, 961, 2316, 2635
MhlI	GDGCHC	6 cut(s)	1153, 1857, 1937, 2131, 2193, 2623
MluI	ACGCGT	1 cut(s)	1139
MlyI	GAGTC	9 cut(s)	163, 263, 416, 418, 679, 1182, 2266, 2463, 2649
MmeI	TCCRAC	7 cut(s)	93, 207, 716, 1900, 2211, 2595, 2843
Mph1103I	ATGCAT	1 cut(s)	2097
MroNI	GCCGGC	1 cut(s)	2791
MroXI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
MseI	TTAA	6 cut(s)	306, 1884, 2379, 2468, 2688, 2742
MslI	CAYNNNNRTG	1 cut(s)	1374
MspA1I	CMGCKG	4 cut(s)	46, 194, 2283, 2798
MspI	CCGG	8 cut(s)	264, 346, 1246, 1797, 2225, 2498, 2792, 2898
MunI	CAATTG	2 cut(s)	33, 2460
Mva1269I	GAATGC	1 cut(s)	2097
MvaI	CCWGG	6 cut(s)	63, 1403, 2186, 2423, 2603, 2838
MvnI	CGCG	2 cut(s)	194, 1141
NaeI	GCCGGC	1 cut(s)	2793
NciI	CCSGG	4 cut(s)	264, 265, 1798, 2499
NcoI	CCATGG	1 cut(s)	2312
NgoMIV	GCCGGC	1 cut(s)	2791
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	4 cut(s)	883, 1248, 2455, 2555
NsiI	ATGCAT	1 cut(s)	2097
NspI	RCATGY	4 cut(s)	304, 560, 2387, 2890
PaeI	GCATGC	3 cut(s)	560, 2387, 2890
PagI	TCATGA	1 cut(s)	1186
PciSI	GCTCTTC	2 cut(s)	1845, 2628
PctI	GAATGC	1 cut(s)	2097
PdiI	GCCGGC	1 cut(s)	2793
PdmI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
PfeI	GAWTC	7 cut(s)	649, 1358, 1793, 2294, 2407, 2669, 2719
PfoI	TCCNGGA	3 cut(s)	1796, 2184, 2421
PinAI	ACCGGT	2 cut(s)	1245, 2897
Ple19I	CGATCG	1 cut(s)	1270
PleI	GAGTC	9 cut(s)	162, 263, 415, 418, 679, 1181, 2265, 2462, 2649
PpsI	GAGTC	9 cut(s)	162, 263, 415, 418, 679, 1181, 2265, 2462, 2649
PpuMI	RGGWCCY	2 cut(s)	214, 445
Psp124BI	GAGCTC	1 cut(s)	1857
Psp1406I	AACGTT	2 cut(s)	1199, 1535
Psp5II	RGGWCCY	2 cut(s)	214, 445
Psp6I	CCWGG	6 cut(s)	61, 1401, 2184, 2421, 2601, 2836
PspEI	GGTNACC	1 cut(s)	2555
PspFI	CCCAGC	2 cut(s)	42, 2279
PspGI	CCWGG	6 cut(s)	61, 1401, 2184, 2421, 2601, 2836
PspOMI	GGGCCC	1 cut(s)	1933
PspPI	GGNCC	6 cut(s)	214, 445, 1933, 1934, 2328, 2568
PspPPI	RGGWCCY	2 cut(s)	214, 445
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PstI	CTGCAG	1 cut(s)	1825
PstNI	CAGNNNCTG	1 cut(s)	1222
PsuI	RGATCY	4 cut(s)	259, 961, 2316, 2635
PvuI	CGATCG	1 cut(s)	1270
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	8 cut(s)	98, 344, 667, 756, 1058, 1745, 1787, 2771
RsaNI	GTAC	8 cut(s)	97, 343, 666, 755, 1057, 1744, 1786, 2770
RseI	CAYNNNNRTG	1 cut(s)	1374
SacI	GAGCTC	1 cut(s)	1857
SacII	CCGCGG	1 cut(s)	195
SapI	GCTCTTC	2 cut(s)	1845, 2628
SaqAI	TTAA	6 cut(s)	306, 1884, 2379, 2468, 2688, 2742
Sau96I	GGNCC	6 cut(s)	214, 445, 1933, 1934, 2328, 2568
SchI	GAGTC	9 cut(s)	163, 263, 416, 418, 679, 1182, 2266, 2463, 2649
SduI	GDGCHC	6 cut(s)	1153, 1857, 1937, 2131, 2193, 2623
SfaNI	GCATC	8 cut(s)	91, 466, 980, 1036, 1795, 2104, 2389, 2516
SfcI	CTRYAG	2 cut(s)	495, 1821
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	4 cut(s)	214, 445, 2328, 2568
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	1374
SmlI	CTYRAG	5 cut(s)	428, 699, 1697, 2081, 2644
SmoI	CTYRAG	5 cut(s)	428, 699, 1697, 2081, 2644
SphI	GCATGC	3 cut(s)	560, 2387, 2890
SsiI	CCGC	4 cut(s)	192, 194, 2283, 2798
SspMI	CTAG	4 cut(s)	879, 921, 1343, 2843
SstI	GAGCTC	1 cut(s)	1857
StyI	CCWWGG	3 cut(s)	878, 2312, 2487
TaaI	ACNGT	7 cut(s)	169, 496, 1056, 1218, 1493, 1918, 1999
TaiI	ACGT	7 cut(s)	772, 814, 1150, 1202, 1538, 1639, 2694
TaqI	TCGA	6 cut(s)	627, 1233, 1270, 1420, 1906, 2242
TaqII	GACCGA	1 cut(s)	2574
TatI	WGTACW	2 cut(s)	1056, 2769
TfiI	GAWTC	7 cut(s)	649, 1358, 1793, 2294, 2407, 2669, 2719
Tru1I	TTAA	6 cut(s)	306, 1884, 2379, 2468, 2688, 2742
Tru9I	TTAA	6 cut(s)	306, 1884, 2379, 2468, 2688, 2742
TscAI	CASTG	6 cut(s)	787, 1378, 1665, 2358, 2444, 2715
TseFI	GTSAC	4 cut(s)	883, 1248, 2455, 2555
Tsp45I	GTSAC	4 cut(s)	883, 1248, 2455, 2555
TspGWI	ACGGA	1 cut(s)	419
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	6 cut(s)	787, 1378, 1665, 2358, 2444, 2715
VneI	GTGCAC	1 cut(s)	2127
VpaK11BI	GGWCC	4 cut(s)	214, 445, 2328, 2568
XapI	RAATTY	3 cut(s)	316, 761, 1077
XbaI	TCTAGA	1 cut(s)	2842
XceI	RCATGY	4 cut(s)	304, 560, 2387, 2890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2118
XmaI	CCCGGG	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	878
XmnI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
XspI	CTAG	4 cut(s)	879, 921, 1343, 2843
Zsp2I	ATGCAT	1 cut(s)	2097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.