Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005600

Physical Location & Seq

Genomic Coordinates Forward (+)

27925313 .. 27931528

Gene Structure 6216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1230800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGGCTGCAAAGAACTTGGAGAAGATGGCTTCGATTGATGTCCAGCTGAGGCTGCTGGCACCTGGGAAGGTCTCTGAGGATGACAAACTGATTGAGTACGATGCTCTGCTGTTGGATCGCTTTCTTGATATTCTTCAGGATTTACATGGAGAGAATCTCAGAGAAACGGTGCAAGATTGTTATGAGCTTTCTGCGGAATATGAAAGAAAGCAGGACCCTCAAAAGTTGGCGGAACTTGGGAATGTGCTAACGAGTTTGGATCCCGGGGACTCCATAGTCATTGCTAAATCCTTTTCTCACATGCTTAACTTGGCCAATTTGGCCGAGGAAGTTCAGATTGCGTACCGGAGGAGGATCAAGATGAAGAAGAAGGGAGATTTTGCTGATGAGGCTTCAGCTACTACGGAGTCAGACATTGAAGAGACTCTCAAGAGGCTTGTGGGGGACCTGAAAAAGTCCCCAGAAGAAGTTTTTGATGCCTTGAAGAACCAGACTGTAGATTTGGTTTTCACTGCACATCCTACTCAGTCTGTTCGCAGGTCTTTGCTCCAAAAGCATGCAAGGATAAGAAATTGTTTGACGAAGTTGAATGCTAAGGACATTACGCCTGATGATAAGCAGGAACTCGATGAGTCTTTACAAAGGGAGATTCAAGCTGCATTTCGTACAGATGAAATCCGAAGGACTCCTCCAACCCCTCAAGATGAGATGAGGGCAGGAATGAGCTACTTCCATGAGACAATTTGGAAAGGCGTACCGAAATTCTTACGTCGTGTTGACACTGCTTTGAAGAACATAGGGATAAACGAACGTGTTCCTTACAATGCCCCTCTCATTCAGTTTTCTTCTTGGATGGGTGGGGATCGTGATGGAAACCCCAGGGTCACTCCTGAAGTTACTCGGGATGTGTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTTCTCCCAGATAGAGGATCTTATGTTTGAGTTATCCATGTGGCGATGCAATGATGAGCTTCGTGCTCGTGCTCATGAACTTCATAGGTCTTCGAAGAAGGATGCGAAACACTACATAGAGTTTTGGAAACAAATTCCTCCAAATGAGCCTTATCGAGTTATTCTTGGAGATGTAAGAGACAAGCTTTACAATACACGTGAACGTGCTCGCCAATTATTAGCCAATGGAGTCTCTGACATTCCTGAGGACACAACGTTTACCAATGTTGAACAGTTTCTGGAGCCTCTCGAACTTTGTTACCAGTCACTCTGCTCCTGTGGCGATCGGGCAATTGCTGATGGAAGCCTTCTTGATTTCTTAAGGCAAGTTTCTACTTTTGGGCTGTCTCTTGTGAGACTAGACATACGACAAGAATCAGACAGGCACACTGATGTCCTCAATGCTATAACAAAGCACCTGGAGATAGGATCTTATCGAGAATGGTCTGAGGAGCGTAGGCAAGAATGGCTCTTGTCTGAGCTTCGTGGCAAGCGCCCCCTTTTTGGTGCTGATGTTCCCAAGACTGAAGAAATTGCTGATGTTCTGGACACATTCCATGTCATTGCAGAACTTCCCTCAGACAATTTTGGTGCTTATATTATATCAATGGCAACATCCCCATCTGATGTTCTCGCTGTTGAGCTTTTACAACGTGAATGTGGTGTGAAGGAGCCACTAAGGGTTGTTCCATTGTTTGAGAAGCTTGCTGATCTTGAGGCTGCTCCTGCTGCTGTGGCTCGTCTCTTTTCTATAGACTGGTACAAAAACCGGATCAATGGGAAGCAAGAAGTCATGATAGGGTACTCAGATTCCGGAAAGGATGCTGGTCGTCTATCTGCAGCATGGCAGTTATACAAGGCTCAGGAAGAGCTCGTAAAGGTTGCAAAAAAATTTGGGGTTAAGCTTACGATGTTTCATGGTCGAGGTGGAACAGTTGGAAGAGGAGGAGGGCCCACCCATCTTGCTATATTGTCTCAGCCACCCGACACTATTCATGGTTCGCTTCGTGTTACAGTTCAAGGTGAAGTTATTGAGCAATCATTTGGGGAGGAGCACTTGTGTTTTAGAACACTCCAGCGTTTCACAGCAGCTACGCTTGAGCACGGAATGCACCCTCCTGTCTCCCCAAAGCCAGAATGGCGTGCACTCATGGATGAAATGGGCGTCATTGCAACAGAGGAGTATCGGTCAATAGTTTTCCAGGAGCCCCGTTTTGTTGAATACTTTCGCCTCGCAACACCAGAGATGGAGTACGGTCGAATGAACATTGGGAGTCGTCCTTCAAAACGAAAGCCAAGTGGAGGCATTGAATCACTTCGTGCAATCCCATGGATCTTTGCTTGGACCCAGACAAGATTTCACTTACCAGTGTGGCTTGGCTTTGGGGCAGCATTTAAGCATGTTATTGAGAAGGATGCGAAGAATCTCCAAATGCTTCGGGAGATGTATAATCAGTGGCCTTTCTTCAGAGTCACAATTGATTTAATTGAGATGGTGTTTGCCAAGGGTGATCCCGGTATTGCCTCTCTGTATGACAAGCTTCTCGTGTCAGAAGACCTATGGTCATTTGGCGACCGATTGAGGGCCAACTATGAACAAACTAAGCTCCTCGTCCTCCAGGTTGCTGGACATAAGGCTCTTCTGGAAGGAGATCCCTACTTGAGGCAGCGACTCCTCCTTCGTGATTCATACATCACGACACTTAATGTGTGCCAAGCCTATACACTGAAGCAAATTCGTGATCCAAACTACCATGTCAAAGTAAGGCCACATTTGTCGTCGGAGTACATGGAAACAACCACCAAGCCGGCAGCAGAGCTTGTGAAACTCAATCCAACGAGCGAGTATGCTCCTGGTCTGGAAGACACGCTAATCCTGACCATGAAGGGTATTGCTGCTGGTATGCAGAACACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

968

Amino Acids

110.22

Weight (kDa)

5.97

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 967	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42600 AT2G42600 AT2G42600
fragaria_vesca	FvH4_6g27390 FvH4_6g27390 FvH4_6g27390 FvH4_6g33320
malus_domestica	MD09G1237900.v1.1 MD17G1230800.v1.1
prunus_persica	Prupe.3G118300_v2.0.a1
pyrus_communis	pycom09g15640 pycom17g23400
rosa_chinensis	RchiOBHm_Chr2g0090101 RchiOBHm_Chr2g0129661
rosa_laevigata	RLG00000016085 RLG00000019094
rosa_multiflora	Rmu_sc0008968.1_g000006 Rmu_sc0009263.1_g000005 Rmu_sc0020548.1_g000003
rosa_roxburghii	Rroxscaffold_2G00114470
rosa_rugosa	Rorug02G0005300 Rorug02G0288200
rosa_samantha	Rh2AG339500 Rh2BG348300 Rh2CG326900 Rh2DG366400
rosa_wichuraiana	Rw2G004560 Rw2G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	1796
AciI	CCGC	2 cut(s)	194, 230
AclI	AACGTT	1 cut(s)	1199
AcoI	YGGCCR	2 cut(s)	312, 321
AcsI	RAATTY	4 cut(s)	761, 1077, 1874, 2718
AcuI	CTGAAG	6 cut(s)	119, 378, 912, 1530, 2434, 2732
AcvI	CACGTG	1 cut(s)	1142
AcyI	GRCGYC	1 cut(s)	2148
AdeI	CACNNNGTG	1 cut(s)	2303
AfaI	GTAC	8 cut(s)	98, 344, 667, 756, 1745, 1787, 2237, 2771
AfiI	CCNNNNNNNGG	5 cut(s)	958, 1487, 2285, 2566, 2646
AflII	CTTAAG	1 cut(s)	1303
AflIII	ACRYGT	2 cut(s)	811, 1139
AgeI	ACCGGT	1 cut(s)	2897
AhdI	GACNNNNNGTC	1 cut(s)	2545
AjnI	CCWGG	6 cut(s)	61, 878, 1401, 2184, 2601, 2836
Alw21I	GWGCWC	7 cut(s)	1012, 1018, 1153, 1857, 2040, 2088, 2131
Alw44I	GTGCAC	1 cut(s)	2127
AlwNI	CAGNNNCTG	1 cut(s)	1222
Ama87I	CYCGRG	2 cut(s)	263, 900
Aor13HI	TCCGGA	1 cut(s)	1796
AoxI	GGCC	6 cut(s)	312, 321, 1934, 2441, 2568, 2750
ApaI	GGGCCC	1 cut(s)	1938
ApaLI	GTGCAC	1 cut(s)	2127
ApoI	RAATTY	4 cut(s)	761, 1077, 1874, 2718
ArsI	GACNNNNNNTTYG	4 cut(s)	484, 516, 2646, 2678
AsiGI	ACCGGT	1 cut(s)	2897
Asp700I	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
AspLEI	GCGC	1 cut(s)	1479
AspS9I	GGNCC	6 cut(s)	214, 445, 1934, 1935, 2328, 2568
AsuC2I	CCSGG	3 cut(s)	264, 265, 2499
AsuHPI	GGTGA	2 cut(s)	2018, 2504
AsuII	TTCGAA	1 cut(s)	1037
AvaI	CYCGRG	2 cut(s)	263, 900
AvaII	GGWCC	3 cut(s)	214, 445, 2328
AxyI	CCTNAGG	1 cut(s)	1188
BaeGI	GKGCMC	2 cut(s)	1938, 2131
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	3 cut(s)	1857, 1938, 2193
BauI	CACGAG	2 cut(s)	1011, 2528
BbrPI	CACGTG	1 cut(s)	1142
BbsI	GAAGAC	3 cut(s)	1026, 2544, 2853
Bbv12I	GWGCWC	7 cut(s)	1012, 1018, 1153, 1857, 2040, 2088, 2131
BbvCI	CCTCAGC	1 cut(s)	47
BccI	CCATC	9 cut(s)	19, 847, 863, 922, 1277, 1612, 1950, 2224, 2470
BciT130I	CCWGG	6 cut(s)	63, 880, 1403, 2186, 2603, 2838
BcnI	CCSGG	3 cut(s)	264, 265, 2499
BfaI	CTAG	2 cut(s)	921, 1343
BfmI	CTRYAG	3 cut(s)	495, 1734, 1821
BfoI	RGCGCY	1 cut(s)	1480
BfrI	CTTAAG	1 cut(s)	1303
BfuAI	ACCTGC	1 cut(s)	528
BglI	GCCNNNNNGGC	2 cut(s)	320, 2122
Bme1390I	CCNGG	9 cut(s)	63, 264, 265, 880, 1403, 2186, 2499, 2603, 2838
Bme18I	GGWCC	3 cut(s)	214, 445, 2328
BmeRI	GACNNNNNGTC	1 cut(s)	2545
BmeT110I	CYCGRG	2 cut(s)	263, 900
BmgT120I	GGNCC	6 cut(s)	214, 445, 1934, 1935, 2328, 2568
BmiI	GGNNCC	9 cut(s)	60, 216, 261, 446, 1227, 1656, 1936, 2190, 2330
BmrFI	CCNGG	9 cut(s)	63, 264, 265, 880, 1403, 2186, 2499, 2603, 2838
BmsI	GCATC	6 cut(s)	91, 466, 980, 1036, 1795, 2389
BpiI	GAAGAC	3 cut(s)	1026, 2544, 2853
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	4 cut(s)	1244, 1424, 2042, 2585
Bpu10I	CCTNAGC	3 cut(s)	47, 594, 1845
Bpu14I	TTCGAA	1 cut(s)	1037
BpuEI	CTTGAG	5 cut(s)	413, 684, 1718, 2102, 2665
BpuMI	CCSGG	3 cut(s)	264, 265, 2499
BsaAI	YACGTR	1 cut(s)	1142
BsaHI	GRCGYC	1 cut(s)	2148
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	8 cut(s)	62, 263, 264, 324, 878, 879, 2312, 2487
BsaWI	WCCGGW	4 cut(s)	345, 1752, 1796, 2897
BsaXI	ACNNNNNCTCC	4 cut(s)	2027, 2057, 2156, 2186
Bsc4I	CCNNNNNNNGG	5 cut(s)	958, 1487, 2285, 2566, 2646
Bse118I	RCCGGY	2 cut(s)	2791, 2897
Bse1I	ACTGG	3 cut(s)	1246, 1745, 2351
Bse21I	CCTNAGG	1 cut(s)	1188
Bse3DI	GCAATG	4 cut(s)	279, 1000, 1545, 2151
BseAI	TCCGGA	1 cut(s)	1796
BseBI	CCWGG	6 cut(s)	63, 880, 1403, 2186, 2603, 2838
BseDI	CCNNGG	8 cut(s)	62, 263, 264, 324, 878, 879, 2312, 2487
BseGI	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1598, 1810, 2143, 2404
BseLI	CCNNNNNNNGG	5 cut(s)	958, 1487, 2285, 2566, 2646
BseMI	GCAATG	4 cut(s)	279, 1000, 1545, 2151
BseNI	ACTGG	3 cut(s)	1246, 1745, 2351
BseRI	GAGGAG	9 cut(s)	364, 678, 1448, 1941, 1944, 2048, 2177, 2582, 2648
BseSI	GKGCMC	2 cut(s)	1938, 2131
BsgI	GTGCAG	1 cut(s)	498
Bsh1285I	CGRYCG	3 cut(s)	1270, 2242, 2560
BshFI	GGCC	6 cut(s)	314, 323, 1936, 2443, 2570, 2752
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	2897
BsiEI	CGRYCG	3 cut(s)	1270, 2242, 2560
BsiHKAI	GWGCWC	7 cut(s)	1012, 1018, 1153, 1857, 2040, 2088, 2131
BsiHKCI	CYCGRG	2 cut(s)	263, 900
BsiSI	CCGG	7 cut(s)	264, 346, 1753, 1797, 2499, 2792, 2898
BslFI	GGGAC	3 cut(s)	281, 442, 458
BslI	CCNNNNNNNGG	5 cut(s)	958, 1487, 2285, 2566, 2646
BsmBI	CGTCTC	1 cut(s)	1730
BsmFI	GGGAC	3 cut(s)	281, 442, 458
BsmI	GAATGC	2 cut(s)	595, 2097
BsnI	GGCC	6 cut(s)	314, 323, 1936, 2443, 2570, 2752
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	2 cut(s)	263, 900
Bsp119I	TTCGAA	1 cut(s)	1037
Bsp120I	GGGCCC	1 cut(s)	1934
Bsp1286I	GDGCHC	9 cut(s)	1012, 1018, 1153, 1857, 1938, 2040, 2088, 2131, 2193
Bsp13I	TCCGGA	1 cut(s)	1796
Bsp19I	CCATGG	1 cut(s)	2312
BspACI	CCGC	2 cut(s)	194, 230
BspANI	GGCC	6 cut(s)	314, 323, 1936, 2443, 2570, 2752
BspEI	TCCGGA	1 cut(s)	1796
BspHI	TCATGA	2 cut(s)	1018, 1776
BspLI	GGNNCC	9 cut(s)	60, 216, 261, 446, 1227, 1656, 1936, 2190, 2330
BspMAI	CTGCAG	1 cut(s)	1825
BspMI	ACCTGC	1 cut(s)	528
BspQI	GCTCTTC	2 cut(s)	1845, 2628
BspT104I	TTCGAA	1 cut(s)	1037
BspT107I	GGYRCC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	1303
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	4 cut(s)	279, 1000, 1545, 2151
BsrFI	RCCGGY	2 cut(s)	2791, 2897
BsrI	ACTGG	3 cut(s)	1246, 1745, 2351
BssAI	RCCGGY	2 cut(s)	2791, 2897
BssECI	CCNNGG	8 cut(s)	62, 263, 264, 324, 878, 879, 2312, 2487
BssNI	GRCGYC	1 cut(s)	2148
BssSI	CACGAG	2 cut(s)	1011, 2528
BssT1I	CCWWGG	2 cut(s)	2312, 2487
Bst2BI	CACGAG	2 cut(s)	1011, 2528
Bst2UI	CCWGG	6 cut(s)	63, 880, 1403, 2186, 2603, 2838
Bst4CI	ACNGT	6 cut(s)	169, 496, 1218, 1918, 1999, 2240
Bst6I	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
BstACI	GRCGYC	1 cut(s)	2148
BstAFI	CTTAAG	1 cut(s)	1303
BstAPI	GCANNNNNTGC	1 cut(s)	2092
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	1 cut(s)	1037
BstC8I	GCNNGC	7 cut(s)	57, 558, 1153, 1475, 1689, 2127, 2793
BstDSI	CCRYGG	1 cut(s)	2312
BstENI	CCTNNNNNAGG	1 cut(s)	2644
BstF5I	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1598, 1810, 2143, 2404
BstH2I	RGCGCY	1 cut(s)	1480
BstHHI	GCGC	1 cut(s)	1479
BstMCI	CGRYCG	3 cut(s)	1270, 2242, 2560
BstNI	CCWGG	6 cut(s)	63, 880, 1403, 2186, 2603, 2838
BstNSI	RCATGY	3 cut(s)	304, 560, 2387
BstSCI	CCNGG	9 cut(s)	61, 262, 263, 878, 1401, 2184, 2497, 2601, 2836
BstSFI	CTRYAG	3 cut(s)	495, 1734, 1821
BstSLI	GKGCMC	2 cut(s)	1938, 2131
BstV2I	GAAGAC	3 cut(s)	1026, 2544, 2853
BstX2I	RGATCY	5 cut(s)	259, 961, 1412, 2316, 2635
BstXI	CCANNNNNNTGG	1 cut(s)	2609
BstYI	RGATCY	5 cut(s)	259, 961, 1412, 2316, 2635
Bsu36I	CCTNAGG	1 cut(s)	1188
BsuRI	GGCC	6 cut(s)	314, 323, 1936, 2443, 2570, 2752
BtgI	CCRYGG	1 cut(s)	2312
BtgZI	GCGATG	1 cut(s)	1003
BtsCI	GGATG	9 cut(s)	85, 517, 858, 910, 1051, 1598, 1810, 2143, 2404
BtsI	GCAGTG	2 cut(s)	510, 780
BtsIMutI	CAGTG	6 cut(s)	510, 780, 1371, 2358, 2444, 2708
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	7 cut(s)	57, 558, 1153, 1475, 1689, 2127, 2793
CaiI	CAGNNNCTG	1 cut(s)	1222
CciI	TCATGA	2 cut(s)	1018, 1776
CfoI	GCGC	1 cut(s)	1479
Cfr10I	RCCGGY	2 cut(s)	2791, 2897
Cfr13I	GGNCC	6 cut(s)	214, 445, 1934, 1935, 2328, 2568
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	1 cut(s)	2137
Csp6I	GTAC	8 cut(s)	97, 343, 666, 755, 1744, 1786, 2236, 2770
CspAI	ACCGGT	1 cut(s)	2897
CspCI	CAANNNNNGTGG	2 cut(s)	1927, 1962
CviQI	GTAC	8 cut(s)	97, 343, 666, 755, 1744, 1786, 2236, 2770
DraIII	CACNNNGTG	1 cut(s)	2303
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	2545
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	312, 321
Eam1104I	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
Eam1105I	GACNNNNNGTC	1 cut(s)	2545
EarI	CTCTTC	4 cut(s)	414, 1845, 1918, 2628
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	1855
Eco130I	CCWWGG	2 cut(s)	2312, 2487
Eco24I	GRGCYC	3 cut(s)	1857, 1938, 2193
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	3 cut(s)	214, 445, 2328
Eco53kI	GAGCTC	1 cut(s)	1855
Eco57I	CTGAAG	6 cut(s)	119, 378, 912, 1530, 2434, 2732
Eco72I	CACGTG	1 cut(s)	1142
Eco81I	CCTNAGG	1 cut(s)	1188
Eco88I	CYCGRG	2 cut(s)	263, 900
EcoICRI	GAGCTC	1 cut(s)	1855
EcoNI	CCTNNNNNAGG	1 cut(s)	2644
EcoO109I	RGGNCCY	3 cut(s)	214, 445, 1934
EcoRII	CCWGG	6 cut(s)	61, 878, 1401, 2184, 2601, 2836
EcoT14I	CCWWGG	2 cut(s)	2312, 2487
EcoT38I	GRGCYC	3 cut(s)	1857, 1938, 2193
ErhI	CCWWGG	2 cut(s)	2312, 2487
Esp3I	CGTCTC	1 cut(s)	1730
FaqI	GGGAC	3 cut(s)	281, 442, 458
FokI	GGATG	9 cut(s)	92, 504, 865, 917, 1058, 1585, 1817, 2150, 2411
FriOI	GRGCYC	3 cut(s)	1857, 1938, 2193
FspBI	CTAG	2 cut(s)	921, 1343
GlaI	GCGC	1 cut(s)	1478
GsuI	CTGGAG	4 cut(s)	1244, 1424, 2042, 2585
HaeII	RGCGCY	1 cut(s)	1480
HaeIII	GGCC	6 cut(s)	314, 323, 1936, 2443, 2570, 2752
HapII	CCGG	7 cut(s)	264, 346, 1753, 1797, 2499, 2792, 2898
HgaI	GACGC	1 cut(s)	2137
HhaI	GCGC	1 cut(s)	1479
Hin1I	GRCGYC	1 cut(s)	2148
Hin6I	GCGC	1 cut(s)	1477
HinP1I	GCGC	1 cut(s)	1477
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	4 cut(s)	1127, 1685, 1886, 2522
HpaII	CCGG	7 cut(s)	264, 346, 1753, 1797, 2499, 2792, 2898
HphI	GGTGA	2 cut(s)	2018, 2504
Hpy166II	GTNNAC	4 cut(s)	778, 1145, 1203, 2129
Hpy8I	GTNNAC	4 cut(s)	778, 1145, 1203, 2129
Hpy99I	CGWCG	2 cut(s)	774, 2767
HpyCH4III	ACNGT	6 cut(s)	169, 496, 1218, 1918, 1999, 2240
HpyCH4IV	ACGT	6 cut(s)	769, 811, 1141, 1147, 1199, 1636
HpySE526I	ACGT	6 cut(s)	769, 811, 1141, 1147, 1199, 1636
Hsp92I	GRCGYC	1 cut(s)	2148
HspAI	GCGC	1 cut(s)	1477
Kpn2I	TCCGGA	1 cut(s)	1796
KroI	GCCGGC	1 cut(s)	2791
KroNI	GCCGGC	1 cut(s)	2793
LguI	GCTCTTC	2 cut(s)	1845, 2628
LweI	GCATC	6 cut(s)	91, 466, 980, 1036, 1795, 2389
MaeI	CTAG	2 cut(s)	921, 1343
MaeII	ACGT	6 cut(s)	769, 811, 1141, 1147, 1199, 1636
MaeIII	GTNAC	6 cut(s)	883, 895, 1241, 1248, 1993, 2455
MfeI	CAATTG	2 cut(s)	1275, 2460
MflI	RGATCY	5 cut(s)	259, 961, 1412, 2316, 2635
MhlI	GDGCHC	9 cut(s)	1012, 1018, 1153, 1857, 1938, 2040, 2088, 2131, 2193
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	9 cut(s)	263, 416, 418, 641, 679, 1182, 2266, 2463, 2649
MmeI	TCCRAC	5 cut(s)	93, 716, 1900, 2745, 2843
Mox20I	TGGCCA	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	1796
MroNI	GCCGGC	1 cut(s)	2791
MroXI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	6 cut(s)	306, 1304, 1884, 2379, 2468, 2688
MslI	CAYNNNNRTG	1 cut(s)	1374
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	46
MspCI	CTTAAG	1 cut(s)	1303
MspI	CCGG	7 cut(s)	264, 346, 1753, 1797, 2499, 2792, 2898
MspR9I	CCNGG	9 cut(s)	63, 264, 265, 880, 1403, 2186, 2499, 2603, 2838
MunI	CAATTG	2 cut(s)	1275, 2460
Mva1269I	GAATGC	2 cut(s)	595, 2097
MvaI	CCWGG	6 cut(s)	63, 880, 1403, 2186, 2603, 2838
NaeI	GCCGGC	1 cut(s)	2793
NciI	CCSGG	3 cut(s)	264, 265, 2499
NcoI	CCATGG	1 cut(s)	2312
NgoMIV	GCCGGC	1 cut(s)	2791
NlaIV	GGNNCC	9 cut(s)	60, 216, 261, 446, 1227, 1656, 1936, 2190, 2330
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	3 cut(s)	883, 1248, 2455
NspI	RCATGY	3 cut(s)	304, 560, 2387
NspV	TTCGAA	1 cut(s)	1037
PaeI	GCATGC	1 cut(s)	560
PagI	TCATGA	2 cut(s)	1018, 1776
PasI	CCCWGGG	1 cut(s)	879
PciSI	GCTCTTC	2 cut(s)	1845, 2628
PctI	GAATGC	2 cut(s)	595, 2097
PdiI	GCCGGC	1 cut(s)	2793
PdmI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
PfeI	GAWTC	7 cut(s)	154, 649, 1358, 1793, 2294, 2407, 2669
PfoI	TCCNGGA	1 cut(s)	2184
PinAI	ACCGGT	1 cut(s)	2897
Ple19I	CGATCG	1 cut(s)	1270
PleI	GAGTC	9 cut(s)	263, 415, 418, 640, 679, 1181, 2265, 2462, 2649
PmaCI	CACGTG	1 cut(s)	1142
PmlI	CACGTG	1 cut(s)	1142
PpsI	GAGTC	9 cut(s)	263, 415, 418, 640, 679, 1181, 2265, 2462, 2649
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	2 cut(s)	214, 445
Psp124BI	GAGCTC	1 cut(s)	1857
Psp1406I	AACGTT	1 cut(s)	1199
Psp5II	RGGWCCY	2 cut(s)	214, 445
Psp6I	CCWGG	6 cut(s)	61, 878, 1401, 2184, 2601, 2836
PspCI	CACGTG	1 cut(s)	1142
PspGI	CCWGG	6 cut(s)	61, 878, 1401, 2184, 2601, 2836
PspN4I	GGNNCC	9 cut(s)	60, 216, 261, 446, 1227, 1656, 1936, 2190, 2330
PspOMI	GGGCCC	1 cut(s)	1934
PspPI	GGNCC	6 cut(s)	214, 445, 1934, 1935, 2328, 2568
PspPPI	RGGWCCY	2 cut(s)	214, 445
PstI	CTGCAG	1 cut(s)	1825
PstNI	CAGNNNCTG	1 cut(s)	1222
PsuI	RGATCY	5 cut(s)	259, 961, 1412, 2316, 2635
PvuI	CGATCG	1 cut(s)	1270
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	8 cut(s)	98, 344, 667, 756, 1745, 1787, 2237, 2771
RsaNI	GTAC	8 cut(s)	97, 343, 666, 755, 1744, 1786, 2236, 2770
RseI	CAYNNNNRTG	1 cut(s)	1374
SacI	GAGCTC	1 cut(s)	1857
SapI	GCTCTTC	2 cut(s)	1845, 2628
SaqAI	TTAA	6 cut(s)	306, 1304, 1884, 2379, 2468, 2688
Sau96I	GGNCC	6 cut(s)	214, 445, 1934, 1935, 2328, 2568
SchI	GAGTC	9 cut(s)	263, 416, 418, 641, 679, 1182, 2266, 2463, 2649
ScrFI	CCNGG	9 cut(s)	63, 264, 265, 880, 1403, 2186, 2499, 2603, 2838
SduI	GDGCHC	9 cut(s)	1012, 1018, 1153, 1857, 1938, 2040, 2088, 2131, 2193
SfaNI	GCATC	6 cut(s)	91, 466, 980, 1036, 1795, 2389
SfcI	CTRYAG	3 cut(s)	495, 1734, 1821
SfiI	GGCCNNNNNGGCC	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	1037
SinI	GGWCC	3 cut(s)	214, 445, 2328
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	1374
SmlI	CTYRAG	6 cut(s)	428, 699, 1303, 1697, 2081, 2644
SmoI	CTYRAG	6 cut(s)	428, 699, 1303, 1697, 2081, 2644
SphI	GCATGC	1 cut(s)	560
SsiI	CCGC	2 cut(s)	194, 230
SspMI	CTAG	2 cut(s)	921, 1343
SstI	GAGCTC	1 cut(s)	1857
StyD4I	CCNGG	9 cut(s)	61, 262, 263, 878, 1401, 2184, 2497, 2601, 2836
StyI	CCWWGG	2 cut(s)	2312, 2487
TaaI	ACNGT	6 cut(s)	169, 496, 1218, 1918, 1999, 2240
TaiI	ACGT	6 cut(s)	772, 814, 1144, 1150, 1202, 1639
TaqI	TCGA	8 cut(s)	32, 627, 1037, 1099, 1233, 1420, 1906, 2242
TaqII	GACCGA	2 cut(s)	2160, 2574
TatI	WGTACW	1 cut(s)	2769
TfiI	GAWTC	7 cut(s)	154, 649, 1358, 1793, 2294, 2407, 2669
Tru1I	TTAA	6 cut(s)	306, 1304, 1884, 2379, 2468, 2688
Tru9I	TTAA	6 cut(s)	306, 1304, 1884, 2379, 2468, 2688
TscAI	CASTG	6 cut(s)	517, 787, 1378, 2358, 2444, 2715
TseFI	GTSAC	3 cut(s)	883, 1248, 2455
Tsp45I	GTSAC	3 cut(s)	883, 1248, 2455
TspGWI	ACGGA	2 cut(s)	419, 2103
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	6 cut(s)	517, 787, 1378, 2358, 2444, 2715
Vha464I	CTTAAG	1 cut(s)	1303
VneI	GTGCAC	1 cut(s)	2127
VpaK11BI	GGWCC	3 cut(s)	214, 445, 2328
XagI	CCTNNNNNAGG	1 cut(s)	2644
XapI	RAATTY	4 cut(s)	761, 1077, 1874, 2718
XceI	RCATGY	3 cut(s)	304, 560, 2387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2118
XmaI	CCCGGG	1 cut(s)	263
XmnI	GAANNNNTTC	4 cut(s)	813, 1218, 2208, 2298
XspI	CTAG	2 cut(s)	921, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.