Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005600

Physical Location & Seq

Genomic Coordinates Forward (+)

31527491 .. 31528310

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTGGCTTACACAATCGAGTCACATGGTTCGCTTTCTTTGATGGTGAGGATAGGTGTGGCGAGTTGACCGCATCTCCTACTCCTGTTTTTATATCGAAACCCATAAGGTTTGAAACTAGGATGAACTCCCACAGGATGAGTAGCCTATTGTTCATTATAACAGTCCTGGCCATCTCCACTCATTTTGCTCAGGTTCAAGCCACCAGACTGCCACCGATGGACTTCGCTGGTGCTAATCATTTGGGGACATACTCCTCCCCACCGTCTTTGGTCTATGAGAAGGCCAAGTACTCCATGGAATGCTGGCTTCAACGTCTAGCTTCAGGACAAAGCCCCGGAGGGCCTGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

8.74

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42600 AT2G42600 AT2G42600
fragaria_vesca	FvH4_6g27390 FvH4_6g27390 FvH4_6g27390 FvH4_6g33320
malus_domestica	MD09G1237900.v1.1 MD17G1230800.v1.1
prunus_persica	Prupe.3G118300_v2.0.a1
pyrus_communis	pycom09g15640 pycom17g23400
rosa_chinensis	RchiOBHm_Chr2g0090101 RchiOBHm_Chr2g0129661
rosa_laevigata	RLG00000016085 RLG00000019094
rosa_multiflora	Rmu_sc0008968.1_g000006 Rmu_sc0009263.1_g000005 Rmu_sc0020548.1_g000003
rosa_roxburghii	Rroxscaffold_2G00114470
rosa_rugosa	Rorug02G0005300 Rorug02G0288200
rosa_samantha	Rh2AG339500 Rh2BG348300 Rh2CG326900 Rh2DG366400
rosa_wichuraiana	Rw2G004560 Rw2G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	116, 200, 314
AjnI	CCWGG	2 cut(s)	168, 346
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
AoxI	GGCC	3 cut(s)	171, 285, 344
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	173
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BccI	CCATC	3 cut(s)	38, 182, 214
BciT130I	CCWGG	2 cut(s)	170, 348
BcnI	CCSGG	1 cut(s)	339
BfaI	CTAG	3 cut(s)	120, 320, 355
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	3 cut(s)	170, 339, 348
BmgT120I	GGNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	170, 339, 348
BmsI	GCATC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	297, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
BseBI	CCWGG	2 cut(s)	170, 348
BseDI	CCNNGG	2 cut(s)	297, 337
BseGI	GGATG	2 cut(s)	129, 144
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	173, 287, 346
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	173, 287, 346
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	173, 287, 346
BspCNI	CTCAG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	297, 337
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	170, 348
Bst4CI	ACNGT	2 cut(s)	166, 267
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	129, 144
BstNI	CCWGG	2 cut(s)	170, 348
BstSCI	CCNGG	3 cut(s)	168, 337, 346
BsuRI	GGCC	3 cut(s)	173, 287, 346
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	129, 144
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	292
CspCI	CAANNNNNGTGG	4 cut(s)	169, 204, 252, 287
CviAII	CATG	2 cut(s)	27, 298
CviJI	RGCY	9 cut(s)	9, 147, 173, 203, 287, 310, 323, 336, 346
CviKI_1	RGCY	9 cut(s)	9, 147, 173, 203, 287, 310, 323, 336, 346
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	168, 346
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	30, 301
FaiI	YATR	7 cut(s)	28, 95, 107, 161, 253, 279, 299
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	26, 297
FokI	GGATG	2 cut(s)	136, 151
FspBI	CTAG	3 cut(s)	120, 320, 355
HaeIII	GGCC	3 cut(s)	173, 287, 346
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	2 cut(s)	30, 301
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	166, 267
HpyCH4IV	ACGT	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	30, 301
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	3 cut(s)	120, 320, 355
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	22, 350
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	3 cut(s)	43, 268, 335
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	3 cut(s)	170, 339, 348
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	170, 348
NciI	CCSGG	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	297
NlaIII	CATG	2 cut(s)	30, 301
NmuCI	GTSAC	2 cut(s)	22, 350
PctI	GAATGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	168, 346
PspGI	CCWGG	2 cut(s)	168, 346
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	170, 339, 348
SetI	ASST	5 cut(s)	59, 113, 198, 319, 325
SfaNI	GCATC	1 cut(s)	83
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	3 cut(s)	120, 320, 355
StyD4I	CCNGG	3 cut(s)	168, 337, 346
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	166, 267
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	19, 98
TatI	WGTACW	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	22, 350
Tsp45I	GTSAC	2 cut(s)	22, 350
TspDTI	ATGAA	2 cut(s)	140, 145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	3 cut(s)	120, 320, 355
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.