Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005600

Physical Location & Seq

Genomic Coordinates Forward (+)

4322161 .. 4325045

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGGAGCAAGGAACTTGGAGAAGATGGCTTCAATTGATGCACAGCTGAGGCTTTTGGCACCAGGGAAGGTGTCTGAGGATGACAAACTGATCGAGTATGATGCTTTGTTGTTGGATCGTTTCCTCGATATTCTTCAGGATTTACATGGGGAGGATCTCAGACAAACGGTTCAAGACTGTTATGAGCTATCCGCGGAATACGAAGGAAAGAAGGACCCTAAAAAGTTGGAGGAACTCGGAAATGTGTTTACGAGTTTGGATCCTGGTGACTCCATTGTTGTTGCCAAGTCTTTTTCCCACATGCTTAACTTGGCCAATTTGGCTGAAGAAGTTCAGATTGCATATCGGAGAAGGATAAAGTTGAAGAAGGGAGATTTTGTTGATGAAGCAAATGCCACTACGGAGTCGGACATTGAAGAGACGTTCAAGAAGCTTGTGGGGCAACTGAACAAGTCCCCACAACAAATTTTTGATGAGTTGAAGAACCAGACTGTAGATTTGGTTCTAACCGCACATCCTACTCAGTCTGTTCGCAGATCTCTGCTTCAAAAGCATGCAAGGGTAAGAGATTGTTTGACGCAGTTGTATGCCAAGGATGTTACACCTGATGATAAAAAAGAACTCGACGAGGCTCTACATAGGGAGATTCAAGCTGCATTTCGCACCGACGAAATCCGAAGGACTCCTCCAACCCCTCAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACGATTTGGAAAGGTGTACCGAAATTCTTACGCCGAGTTGACACTGCCTTGAAGAGCATTGGGATAAACGAACGTGTTCCCTACAATGCCCCTTTCATTCAATTTTCTTCTTGGATGGGTGGGGATCGTGATGGAAATCCCAGTGTCACTCCAGAAGTTACACGTGATGTATGCTTATTGGCCAGAATGATGGCTGCTAACTTGTACTTCTCCCAGATAGAGGATCTCATGTTTGAGTTATCTATGTGGCGTTGCAACGATGAGCTTCTTGCTCGCGCTCATGAACTTTATAGGTCTTCAAGGAAGTATGCAAAACACTACATAGAGTTTTGGCAACAAATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGAGACAAGCTCTACAATACACGTGAACGTGCTCGTCAATTATTATCCAATGGAACCTCTGACATTCCCGAGGACACAACTTTTACTAATGTTGAACACTTCCTGGAGCCTCTCGAACTGTGTTACCGGTCACTGTGTTCCTGTGGTGACCAGCCAATTGCCGACGGGAGCCTTCTTGATTTCTTACGTCAAGTTTCTACTTTCGGACTTTCTCTTGTGAGACTAGACATAAGGCAAGAATCAGAGAGGCACACTGATGTCATTGATGCTATTACAAAGCACCTGGGCTTCGGGTCTTATAGAGAATGGCCCGAGAAACAAAGGCAAGAATGGCTCTTGTCTGAGCTCAAGGGAAAGCGCCCTCTTTTTGGCACTGATGTTCCCAAGACTGAAGAAATTTCTGATGTATTGGAGACATTCAAAGTCATTTCAGAACTTCCCTCAGACAACTTTGGGGCCTATATTATATCAATGGCAACAGCCCCATCTGATGTACTTGCTGTTGAGCTTTTACAACGTGAATGCCGTGTGAAAACGCCACTGAGGGTTGTTCCACTGTTTGAGAAGCTAGCTGATTTAGAGGCTGCTCCTGCTTCTGTGGCTCGCCTCTTCTCTATGGACTGGTACAAAAACCGGATCAATGGGAAGCAAGAAGTCATGATAGGGTACTCGGATTCAGGAAAGGATGCTGGCCGTCTATCTGCAGCATGGCATCTATACAAGGCTCAAGAAGAGCTCGTAAAGGTTGCGAAACAATATGGAGTTAAGCTCACCATGTTTCATGGCCGAGGTGGAACAGTTGGAAGAGGAGGGGGACCAACTCATCTTGCTATATTGTCTCAGCCACCTGAGACGATTCATGGTTCGCTCCGTGTAACAGTTCAAGGTGAAGTTATTGAACGATCATTTGGAGAGGAGCACTTGTGTTTTAGAACACTAGAGCGTTTCACAGCAGCTACACTAGAGCATGGCATGAATCCCCCAGTTTCGCCCAAGCCAGAATGGCGTGCACTCATGGATGAGATGGCAGTTGTTGCTACGGAGGAATACCGTTCAATAGTTTTCCAGGAACCCCGTTTTGTTGAGTACTTTCGCCTTGCAACACCGGAGATGGAGTATGGTAGGATGAACATTGGGAGTCGTCCATCAAAGCGAAACCAAAGTGGAGGCATCGAATCACTTCGAGCAATCCCATGGATCTTTGCATGGACCCAGACAAGATTTCACTTACCAGTGTGGCTTGGTTTTGGGGCAGCATTTAAGCAAGCCATAGAGAATGATGCAAAGAATCTTCAGATGCTTCGTGACATGTATAATCAGTGGCCTTTCTTCAGAGTCACCATTGATTTAGTTGAGATGGTGTTTGCCAAGGGAGACCCAGGTATTACAGCTCTTTATGACAAGCTTTTAGACAACTATGAAGATACTAAACGCCTCCTACTCCAGGTTGCTGGGCACAGAGATCTTCTGGAAGGAGATCCTTACTTGAGGCAGAGACTTCTTCTTCGTGACTCATATATTACAACACTAAATGTGTGCCAAGCCTATACGCTGAAGCAGATCCGTGACCCCAACTATCATGTTCAAGTAAGGCCATCAAAGGAACCAGCAAGCAAGCCAGCAGCAGAGCTAGTCAAGCTTAACCAAACAAGCGAATATGCTCCAGGTCTAGAGGACACACTTATTTTGACCATGAAGGGTATTGCTGCTGGGATGCAGAACACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

948

Amino Acids

108.24

Weight (kDa)

5.81

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 948	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42600 AT2G42600 AT2G42600
fragaria_vesca	FvH4_6g27390 FvH4_6g27390 FvH4_6g27390 FvH4_6g33320
malus_domestica	MD09G1237900.v1.1 MD17G1230800.v1.1
prunus_persica	Prupe.3G118300_v2.0.a1
pyrus_communis	pycom09g15640 pycom17g23400
rosa_chinensis	RchiOBHm_Chr2g0090101 RchiOBHm_Chr2g0129661
rosa_laevigata	RLG00000016085 RLG00000019094
rosa_multiflora	Rmu_sc0008968.1_g000006 Rmu_sc0009263.1_g000005 Rmu_sc0020548.1_g000003
rosa_roxburghii	Rroxscaffold_2G00114470
rosa_rugosa	Rorug02G0005300 Rorug02G0288200
rosa_samantha	Rh2AG339500 Rh2BG348300 Rh2CG326900 Rh2DG366400
rosa_wichuraiana	Rw2G004560 Rw2G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccII	CGCG	2 cut(s)	194, 1011
AciI	CCGC	3 cut(s)	192, 194, 510
AcoI	YGGCCR	4 cut(s)	312, 915, 1807, 1900
AcsI	RAATTY	4 cut(s)	465, 758, 1074, 1512
AcuI	CTGAAG	6 cut(s)	119, 345, 1527, 2393, 2431, 2690
AcvI	CACGTG	2 cut(s)	899, 1139
AfaI	GTAC	6 cut(s)	753, 941, 1611, 1742, 1784, 2204
AfiI	CCNNNNNNNGG	3 cut(s)	955, 1484, 2560
AflIII	ACRYGT	4 cut(s)	808, 896, 1136, 2424
AgeI	ACCGGT	1 cut(s)	1242
AjnI	CCWGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
AjuI	GAANNNNNNNTTGG	2 cut(s)	2007, 2039
Alw21I	GWGCWC	5 cut(s)	1150, 1464, 1854, 2037, 2128
Alw26I	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2605
Alw44I	GTGCAC	1 cut(s)	2124
Ama87I	CYCGRG	2 cut(s)	1184, 1427
AoxI	GGCC	8 cut(s)	312, 915, 1424, 1572, 1807, 1900, 2438, 2708
ApaLI	GTGCAC	1 cut(s)	2124
ApeKI	GCWGC	8 cut(s)	653, 929, 1700, 1820, 2069, 2369, 2738, 2822
ApoI	RAATTY	4 cut(s)	465, 758, 1074, 1512
ArsI	GACNNNNNNTTYG	4 cut(s)	481, 513, 2604, 2636
AsiGI	ACCGGT	1 cut(s)	1242
Asp700I	GAANNNNTTC	3 cut(s)	330, 810, 2295
AspLEI	GCGC	2 cut(s)	1013, 1476
AspS9I	GGNCC	5 cut(s)	214, 1425, 1572, 1931, 2325
AsuHPI	GGTGA	6 cut(s)	278, 1121, 1274, 1879, 2015, 2446
AsuNHI	GCTAGC	1 cut(s)	1684
AvaI	CYCGRG	2 cut(s)	1184, 1427
AvaII	GGWCC	3 cut(s)	214, 1931, 2325
BaeGI	GKGCMC	2 cut(s)	2128, 2574
BalI	TGGCCA	2 cut(s)	314, 917
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	1464, 1854
BbrPI	CACGTG	2 cut(s)	899, 1139
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	5 cut(s)	1150, 1464, 1854, 2037, 2128
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	8 cut(s)	640, 916, 1687, 1832, 2081, 2381, 2750, 2809
BceAI	ACGGC	2 cut(s)	1626, 1794
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
BcoDI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2605
BfaI	CTAG	6 cut(s)	1340, 1685, 2054, 2078, 2747, 2786
BfmI	CTRYAG	2 cut(s)	492, 1818
BfoI	RGCGCY	1 cut(s)	1477
BglI	GCCNNNNNGGC	2 cut(s)	320, 2119
BglII	AGATCT	2 cut(s)	536, 2578
BisI	GCNGC	8 cut(s)	654, 930, 1701, 1821, 2070, 2370, 2739, 2823
BlsI	GCNGC	8 cut(s)	655, 931, 1702, 1822, 2071, 2371, 2740, 2824
BmcAI	AGTACT	1 cut(s)	2204
Bme1390I	CCNGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
Bme18I	GGWCC	3 cut(s)	214, 1931, 2325
BmeT110I	CYCGRG	2 cut(s)	1184, 1427
BmgT120I	GGNCC	5 cut(s)	214, 1425, 1572, 1931, 2325
BmrFI	CCNGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
BmrI	ACTGGG	2 cut(s)	870, 2093
BmsI	GCATC	9 cut(s)	28, 91, 1372, 1792, 1837, 2295, 2386, 2403, 2820
BmtI	GCTAGC	1 cut(s)	1688
BmuI	ACTGGG	2 cut(s)	870, 2093
BpiI	GAAGAC	1 cut(s)	1023
BplI	GAGNNNNNCTC	4 cut(s)	1110, 1142, 1869, 1901
BpmI	CTGGAG	4 cut(s)	870, 1241, 2543, 2763
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	4 cut(s)	681, 1448, 1827, 2623
BsaAI	YACGTR	2 cut(s)	899, 1139
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	2484
BsaJI	CCNNGG	9 cut(s)	62, 192, 591, 1185, 1399, 1903, 2309, 2484, 2494
BsaWI	WCCGGW	3 cut(s)	1242, 1749, 2221
BsaXI	ACNNNNNCTCC	6 cut(s)	363, 393, 2024, 2054, 2216, 2246
Bsc4I	CCNNNNNNNGG	3 cut(s)	955, 1484, 2560
Bse118I	RCCGGY	1 cut(s)	1242
Bse1I	ACTGG	5 cut(s)	876, 1742, 2099, 2348, 2845
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
BseDI	CCNNGG	9 cut(s)	62, 192, 591, 1185, 1399, 1903, 2309, 2484, 2494
BseGI	GGATG	8 cut(s)	85, 514, 601, 855, 1807, 2140, 2247, 2835
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	955, 1484, 2560
BseMII	CTCAG	9 cut(s)	38, 66, 172, 536, 1449, 1572, 1649, 1956, 1970
BseNI	ACTGG	5 cut(s)	876, 1742, 2099, 2348, 2845
BseRI	GAGGAG	3 cut(s)	675, 1938, 2045
BseSI	GKGCMC	2 cut(s)	2128, 2574
BseXI	GCAGC	8 cut(s)	640, 916, 1687, 1832, 2081, 2381, 2750, 2809
BseYI	CCCAGC	2 cut(s)	2567, 2825
Bsh1236I	CGCG	2 cut(s)	194, 1011
BshFI	GGCC	8 cut(s)	314, 917, 1426, 1574, 1809, 1902, 2440, 2710
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	1242
BsiHKAI	GWGCWC	5 cut(s)	1150, 1464, 1854, 2037, 2128
BsiHKCI	CYCGRG	2 cut(s)	1184, 1427
BsiSI	CCGG	3 cut(s)	1243, 1750, 2222
BslFI	GGGAC	2 cut(s)	439, 1944
BslI	CCNNNNNNNGG	3 cut(s)	955, 1484, 2560
BsmAI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2605
BsmBI	CGTCTC	3 cut(s)	413, 728, 1961
BsmFI	GGGAC	2 cut(s)	439, 1944
BsmI	GAATGC	1 cut(s)	1643
BsnI	GGCC	8 cut(s)	314, 917, 1426, 1574, 1809, 1902, 2440, 2710
Bso31I	GGTCTC	1 cut(s)	2484
BsoBI	CYCGRG	2 cut(s)	1184, 1427
Bsp1286I	GDGCHC	6 cut(s)	1150, 1464, 1854, 2037, 2128, 2574
Bsp19I	CCATGG	1 cut(s)	2309
BspACI	CCGC	3 cut(s)	192, 194, 510
BspANI	GGCC	8 cut(s)	314, 917, 1426, 1574, 1809, 1902, 2440, 2710
BspCNI	CTCAG	9 cut(s)	39, 67, 171, 535, 1450, 1571, 1650, 1957, 1969
BspFNI	CGCG	2 cut(s)	194, 1011
BspHI	TCATGA	3 cut(s)	730, 1015, 1773
BspMAI	CTGCAG	1 cut(s)	1822
BspOI	GCTAGC	1 cut(s)	1688
BspQI	GCTCTTC	2 cut(s)	782, 1842
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	2484
BsrFI	RCCGGY	1 cut(s)	1242
BsrI	ACTGG	5 cut(s)	876, 1742, 2099, 2348, 2845
BssAI	RCCGGY	1 cut(s)	1242
BssECI	CCNNGG	9 cut(s)	62, 192, 591, 1185, 1399, 1903, 2309, 2484, 2494
BssT1I	CCWWGG	3 cut(s)	591, 2309, 2484
Bst2UI	CCWGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
Bst4CI	ACNGT	9 cut(s)	169, 179, 493, 1236, 1251, 1674, 1915, 1996, 2168
Bst6I	CTCTTC	5 cut(s)	411, 782, 1730, 1842, 1915
BstAPI	GCANNNNNTGC	1 cut(s)	2150
BstBAI	YACGTR	2 cut(s)	899, 1139
BstDEI	CTNAG	9 cut(s)	47, 75, 158, 522, 1458, 1558, 1658, 1956, 1965
BstDSI	CCRYGG	2 cut(s)	192, 2309
BstEII	GGTNACC	1 cut(s)	1262
BstENI	CCTNNNNNAGG	1 cut(s)	2558
BstF5I	GGATG	8 cut(s)	85, 514, 601, 855, 1807, 2140, 2247, 2835
BstFNI	CGCG	2 cut(s)	194, 1011
BstH2I	RGCGCY	1 cut(s)	1477
BstHHI	GCGC	2 cut(s)	1013, 1476
BstMAI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2605
BstMWI	GCNNNNNNNGC	9 cut(s)	320, 439, 550, 1447, 1706, 1715, 2119, 2150, 2752
BstNI	CCWGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
BstNSI	RCATGY	3 cut(s)	304, 557, 2428
BstPI	GGTNACC	1 cut(s)	1262
BstSCI	CCNGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
BstSFI	CTRYAG	2 cut(s)	492, 1818
BstSLI	GKGCMC	2 cut(s)	2128, 2574
BstUI	CGCG	2 cut(s)	194, 1011
BstV1I	GCAGC	8 cut(s)	640, 916, 1687, 1832, 2081, 2381, 2750, 2809
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	8 cut(s)	154, 259, 536, 958, 2313, 2578, 2593, 2676
BstXI	CCANNNNNNTGG	2 cut(s)	925, 2567
BstYI	RGATCY	8 cut(s)	154, 259, 536, 958, 2313, 2578, 2593, 2676
BsuRI	GGCC	8 cut(s)	314, 917, 1426, 1574, 1809, 1902, 2440, 2710
BtgI	CCRYGG	2 cut(s)	192, 2309
BtsCI	GGATG	8 cut(s)	85, 514, 601, 855, 1807, 2140, 2247, 2835
BtsI	GCAGTG	1 cut(s)	777
CciI	TCATGA	3 cut(s)	730, 1015, 1773
CfoI	GCGC	2 cut(s)	1013, 1476
Cfr10I	RCCGGY	1 cut(s)	1242
Cfr13I	GGNCC	5 cut(s)	214, 1425, 1572, 1931, 2325
Cfr42I	CCGCGG	1 cut(s)	195
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	6 cut(s)	752, 940, 1610, 1741, 1783, 2203
CspAI	ACCGGT	1 cut(s)	1242
CviQI	GTAC	6 cut(s)	752, 940, 1610, 1741, 1783, 2203
DdeI	CTNAG	9 cut(s)	47, 75, 158, 522, 1458, 1558, 1658, 1956, 1965
EaeI	YGGCCR	4 cut(s)	312, 915, 1807, 1900
Eam1104I	CTCTTC	5 cut(s)	411, 782, 1730, 1842, 1915
EarI	CTCTTC	5 cut(s)	411, 782, 1730, 1842, 1915
Ecl136II	GAGCTC	2 cut(s)	1462, 1852
Eco130I	CCWWGG	3 cut(s)	591, 2309, 2484
Eco24I	GRGCYC	2 cut(s)	1464, 1854
Eco31I	GGTCTC	1 cut(s)	2484
Eco47I	GGWCC	3 cut(s)	214, 1931, 2325
Eco53kI	GAGCTC	2 cut(s)	1462, 1852
Eco57I	CTGAAG	6 cut(s)	119, 345, 1527, 2393, 2431, 2690
Eco72I	CACGTG	2 cut(s)	899, 1139
Eco88I	CYCGRG	2 cut(s)	1184, 1427
Eco91I	GGTNACC	1 cut(s)	1262
EcoICRI	GAGCTC	2 cut(s)	1462, 1852
EcoNI	CCTNNNNNAGG	1 cut(s)	2558
EcoO109I	RGGNCCY	2 cut(s)	214, 1572
EcoO65I	GGTNACC	1 cut(s)	1262
EcoRII	CCWGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
EcoT14I	CCWWGG	3 cut(s)	591, 2309, 2484
EcoT38I	GRGCYC	2 cut(s)	1464, 1854
ErhI	CCWWGG	3 cut(s)	591, 2309, 2484
Esp3I	CGTCTC	3 cut(s)	413, 728, 1961
FaqI	GGGAC	2 cut(s)	439, 1944
Fnu4HI	GCNGC	8 cut(s)	654, 930, 1701, 1821, 2070, 2370, 2739, 2823
FokI	GGATG	8 cut(s)	92, 501, 608, 862, 1814, 2147, 2254, 2842
FriOI	GRGCYC	2 cut(s)	1464, 1854
Fsp4HI	GCNGC	8 cut(s)	654, 930, 1701, 1821, 2070, 2370, 2739, 2823
FspBI	CTAG	6 cut(s)	1340, 1685, 2054, 2078, 2747, 2786
GlaI	GCGC	2 cut(s)	1012, 1475
GluI	GCNGC	8 cut(s)	654, 930, 1701, 1821, 2070, 2370, 2739, 2823
GsaI	CCCAGC	2 cut(s)	2571, 2829
GsuI	CTGGAG	4 cut(s)	870, 1241, 2543, 2763
HaeII	RGCGCY	1 cut(s)	1477
HaeIII	GGCC	8 cut(s)	314, 917, 1426, 1574, 1809, 1902, 2440, 2710
HapII	CCGG	3 cut(s)	1243, 1750, 2222
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	2 cut(s)	1013, 1476
Hin6I	GCGC	2 cut(s)	1011, 1474
HinP1I	GCGC	2 cut(s)	1011, 1474
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	3 cut(s)	431, 2519, 2753
HpaII	CCGG	3 cut(s)	1243, 1750, 2222
HphI	GGTGA	6 cut(s)	278, 1121, 1274, 1879, 2015, 2446
Hpy166II	GTNNAC	5 cut(s)	249, 752, 775, 1142, 2126
Hpy8I	GTNNAC	5 cut(s)	249, 752, 775, 1142, 2126
Hpy99I	CGWCG	3 cut(s)	629, 671, 1283
HpyAV	CCTTC	9 cut(s)	61, 197, 205, 345, 361, 672, 1298, 2582, 2806
HpyCH4III	ACNGT	9 cut(s)	169, 179, 493, 1236, 1251, 1674, 1915, 1996, 2168
HpyCH4IV	ACGT	7 cut(s)	422, 808, 898, 1138, 1144, 1303, 1633
HpyF10VI	GCNNNNNNNGC	9 cut(s)	320, 439, 550, 1447, 1706, 1715, 2119, 2150, 2752
HpyF3I	CTNAG	9 cut(s)	47, 75, 158, 522, 1458, 1558, 1658, 1956, 1965
HpySE526I	ACGT	7 cut(s)	422, 808, 898, 1138, 1144, 1303, 1633
HspAI	GCGC	2 cut(s)	1011, 1474
KspI	CCGCGG	1 cut(s)	195
LguI	GCTCTTC	2 cut(s)	782, 1842
LmnI	GCTCC	7 cut(s)	5, 1222, 1284, 1708, 1989, 2032, 2782
Lsp1109I	GCAGC	8 cut(s)	640, 916, 1687, 1832, 2081, 2381, 2750, 2809
LweI	GCATC	9 cut(s)	28, 91, 1372, 1792, 1837, 2295, 2386, 2403, 2820
MaeI	CTAG	6 cut(s)	1340, 1685, 2054, 2078, 2747, 2786
MaeII	ACGT	7 cut(s)	422, 808, 898, 1138, 1144, 1303, 1633
MfeI	CAATTG	2 cut(s)	33, 1272
MflI	RGATCY	8 cut(s)	154, 259, 536, 958, 2313, 2578, 2593, 2676
MhlI	GDGCHC	6 cut(s)	1150, 1464, 1854, 2037, 2128, 2574
MlsI	TGGCCA	2 cut(s)	314, 917
MluCI	AATT	9 cut(s)	33, 316, 465, 758, 836, 1074, 1154, 1272, 1512
MluNI	TGGCCA	2 cut(s)	314, 917
MlyI	GAGTC	6 cut(s)	263, 413, 676, 2263, 2460, 2621
MmeI	TCCRAC	5 cut(s)	93, 207, 387, 713, 1897
Mox20I	TGGCCA	2 cut(s)	314, 917
MroXI	GAANNNNTTC	3 cut(s)	330, 810, 2295
MscI	TGGCCA	2 cut(s)	314, 917
MseI	TTAA	4 cut(s)	306, 1881, 2376, 2757
MslI	CAYNNNNRTG	1 cut(s)	1371
Msp20I	TGGCCA	2 cut(s)	314, 917
MspA1I	CMGCKG	2 cut(s)	46, 194
MspI	CCGG	3 cut(s)	1243, 1750, 2222
MspR9I	CCNGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
MunI	CAATTG	2 cut(s)	33, 1272
Mva1269I	GAATGC	1 cut(s)	1643
MvaI	CCWGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
MvnI	CGCG	2 cut(s)	194, 1011
MwoI	GCNNNNNNNGC	9 cut(s)	320, 439, 550, 1447, 1706, 1715, 2119, 2150, 2752
NcoI	CCATGG	1 cut(s)	2309
NheI	GCTAGC	1 cut(s)	1684
NmeAIII	GCCGAG	2 cut(s)	794, 1928
NmuCI	GTSAC	8 cut(s)	266, 880, 1245, 1262, 2420, 2452, 2624, 2681
NspI	RCATGY	3 cut(s)	304, 557, 2428
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	3 cut(s)	730, 1015, 1773
PciI	ACATGT	1 cut(s)	2424
PciSI	GCTCTTC	2 cut(s)	782, 1842
PcsI	WCGNNNNNNNCGW	1 cut(s)	1639
PctI	GAATGC	1 cut(s)	1643
PdmI	GAANNNNTTC	3 cut(s)	330, 810, 2295
PfeI	GAWTC	7 cut(s)	646, 1355, 1790, 1972, 2092, 2291, 2404
PfoI	TCCNGGA	2 cut(s)	1218, 2181
PinAI	ACCGGT	1 cut(s)	1242
PkrI	GCNGC	8 cut(s)	655, 931, 1702, 1822, 2071, 2371, 2740, 2824
PleI	GAGTC	6 cut(s)	263, 412, 676, 2262, 2459, 2621
PmaCI	CACGTG	2 cut(s)	899, 1139
PmlI	CACGTG	2 cut(s)	899, 1139
PpsI	GAGTC	6 cut(s)	263, 412, 676, 2262, 2459, 2621
Ppu21I	YACGTR	2 cut(s)	899, 1139
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	2424
Psp124BI	GAGCTC	2 cut(s)	1464, 1854
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
PspCI	CACGTG	2 cut(s)	899, 1139
PspEI	GGTNACC	1 cut(s)	1262
PspFI	CCCAGC	2 cut(s)	2567, 2825
PspGI	CCWGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
PspPI	GGNCC	5 cut(s)	214, 1425, 1572, 1931, 2325
PspPPI	RGGWCCY	1 cut(s)	214
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstI	CTGCAG	1 cut(s)	1822
PsuI	RGATCY	8 cut(s)	154, 259, 536, 958, 2313, 2578, 2593, 2676
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	6 cut(s)	753, 941, 1611, 1742, 1784, 2204
RsaNI	GTAC	6 cut(s)	752, 940, 1610, 1741, 1783, 2203
RseI	CAYNNNNRTG	1 cut(s)	1371
SacI	GAGCTC	2 cut(s)	1464, 1854
SacII	CCGCGG	1 cut(s)	195
SapI	GCTCTTC	2 cut(s)	782, 1842
SaqAI	TTAA	4 cut(s)	306, 1881, 2376, 2757
SatI	GCNGC	8 cut(s)	654, 930, 1701, 1821, 2070, 2370, 2739, 2823
Sau96I	GGNCC	5 cut(s)	214, 1425, 1572, 1931, 2325
ScaI	AGTACT	1 cut(s)	2204
SchI	GAGTC	6 cut(s)	263, 413, 676, 2263, 2460, 2621
ScrFI	CCNGG	8 cut(s)	63, 264, 1220, 1400, 2183, 2496, 2561, 2781
SduI	GDGCHC	6 cut(s)	1150, 1464, 1854, 2037, 2128, 2574
SfaNI	GCATC	9 cut(s)	28, 91, 1372, 1792, 1837, 2295, 2386, 2403, 2820
SfcI	CTRYAG	2 cut(s)	492, 1818
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	3 cut(s)	214, 1931, 2325
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SmlI	CTYRAG	4 cut(s)	696, 1463, 1842, 2602
SmoI	CTYRAG	4 cut(s)	696, 1463, 1842, 2602
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	9 cut(s)	33, 316, 465, 758, 836, 1074, 1154, 1272, 1512
SsiI	CCGC	3 cut(s)	192, 194, 510
SspMI	CTAG	6 cut(s)	1340, 1685, 2054, 2078, 2747, 2786
SstI	GAGCTC	2 cut(s)	1464, 1854
StyD4I	CCNGG	8 cut(s)	61, 262, 1218, 1398, 2181, 2494, 2559, 2779
StyI	CCWWGG	3 cut(s)	591, 2309, 2484
TaaI	ACNGT	9 cut(s)	169, 179, 493, 1236, 1251, 1674, 1915, 1996, 2168
TaiI	ACGT	7 cut(s)	425, 811, 901, 1141, 1147, 1306, 1636
TaqI	TCGA	6 cut(s)	93, 126, 624, 1230, 2289, 2299
TasI	AATT	9 cut(s)	33, 316, 465, 758, 836, 1074, 1154, 1272, 1512
TatI	WGTACW	3 cut(s)	939, 1609, 2202
TfiI	GAWTC	7 cut(s)	646, 1355, 1790, 1972, 2092, 2291, 2404
Tru1I	TTAA	4 cut(s)	306, 1881, 2376, 2757
Tru9I	TTAA	4 cut(s)	306, 1881, 2376, 2757
TseFI	GTSAC	8 cut(s)	266, 880, 1245, 1262, 2420, 2452, 2624, 2681
TseI	GCWGC	8 cut(s)	653, 929, 1700, 1820, 2069, 2369, 2738, 2822
Tsp45I	GTSAC	8 cut(s)	266, 880, 1245, 1262, 2420, 2452, 2624, 2681
TspGWI	ACGGA	4 cut(s)	416, 1976, 2171, 2669
VneI	GTGCAC	1 cut(s)	2124
VpaK11BI	GGWCC	3 cut(s)	214, 1931, 2325
XagI	CCTNNNNNAGG	1 cut(s)	2558
XapI	RAATTY	4 cut(s)	465, 758, 1074, 1512
XbaI	TCTAGA	1 cut(s)	2785
XceI	RCATGY	3 cut(s)	304, 557, 2428
XmnI	GAANNNNTTC	3 cut(s)	330, 810, 2295
XspI	CTAG	6 cut(s)	1340, 1685, 2054, 2078, 2747, 2786
ZrmI	AGTACT	1 cut(s)	2204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.