Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005600

Physical Location & Seq

Genomic Coordinates Reverse (-)

46873495 .. 46879479

Gene Structure 5985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG348300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGGCAGCGAGGAACTTGGAGAAGATGGCTTCAATTGATGCACAGCTGAGGCTGTTGGCACCAGGAAAGGTGTCTGAGGATGACAAACTGATCGAGTACGATGCTTTGTTGTTGGATCGCTTCCTCGATATTCTTCAGGATTTACATGGGGAGGATCTCAGAGAAACGGTTCAAGATTGTTATGAGCTATCTGCGGAATACGAAGGAAAGCAGGACCCGAAAAAGTTGGAGGAACTTGGAAATGTGTTTACAAGTTTGGATCCTGGTGACTCCATTGTTGTTGCCAAGTCTTTTTCCCACATGCTTAACTTGGCCAATTTGGCTGAAGAAGTTCAGATTGCATATCGGAGAAGGATAAAGTTGAAGAAGGGAGATTTTGTTGATGAAGCAAGTGCTACAACAGAGTCGGACATTGAAGAGACGTTCAAGAAGCTTGTGGGGCAACTGAAGAAGTCCCCACAAGAAGTTTTTGATGAATTGAAGAACCAGACTGTAGATTTGGTTCTAACCGCACATCCTACTCAGTCTGTTCGCAGATCTCTGCTTCAAAAGCATGCAAGGGTAAGAAATTGTTTGACGCAGTTGTATGCCAAGGATATTACACCTGATGATAAACAAGAACTCGATGAGGCTCTACAAAGGGAGATTCAAGCTGCATTTCGTACTGACGAAATCCGAAGGACTCCTCCAACCCCTCAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACGATTTGGAAAGGTGTACCCAAATTCTTACGCCGAGTTGACACTGCCTTGAAGAACATTGGGATAAATGAACGTGTTCCTTACAATGCCCCTCTCATTCAATTTTCTTCTTGGATGGGTGGGGATCGTGATGGAAATCCCAGGGTCACTCCAGAAGTTACACGGGATGTATGCTTATTGGCTAGAATGATGGCTGCTAACTTGTATTTCTCCCAGATAGAGGATCTTATGTTTGAGTTATCTATGTGGCGTTGCAACGATGAGCTTCTTGCTCGTGCTCATGAACTTCATAGGTCTTCAAGGAAGGATGCAAAACACTATATAGAGTTTTGGAAACAAATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGAGACAAACTCTACAATACACGTGAACGTGCTCGTCAATTACTATCCAATGGAACCTCTGACATTCCTGAGGACACAACTTTTACTAATGTTGAACAGTTCCTGGAGCCTCTCGAACTGTGTTACCGGTCACTCTGTTCCTGTGGTGACAAGCCAATTGCTGACGGGAGCCTTCTTGATTTCTTACGGCAAGTTTCTACTTTCGGACTTTGTCTTGTGAGACTAGACATACGGCAAGAATCAGACAGGCACACTGATGTCATTGATGCTATTACAAAGCACCTGGGCCTTGGGTCTTATCGAGAATGGCCTGAGAAACAAAGGCAAGAATGGCTGTTGTCTGAGCTCAGTGGAAAGCGCCCTCTTTTTGGCACTGATGTTCCCAAGACAGAAGAAATTTCTGATGTATTGGAGACATTCAAAGTCATTTCAGAACTTCCCTCAGACAACTTTGGTGCCTATATTATATCAATGGCAACAGCCGCATCTGATGTACTTGCTGTTGAGCTTTTACAACGTGAATGCCGTGTGAAAAAGCCACTACGGGTTGTTCCATTGTTTGAGAAGCTTGCTGATTTAGAGGCTGCTCCTGCTGCTGTGGCTCGCCTCTTCTCTATAGATTGGTACAAAAACCGGATCAATGGGAAGCAAGAAGTCATGATAGGGTACTCAGATTCAGGAAAGGATGCAGGCCGTCTATCTGCAGCATGGCAGCTATACAAGGCTCAAGAAGAGCTCATAAAGGTTGCGAAACAATATGGAGTTAAGCTTACCATGTTTCATGGCCGAGGTGGAACGGTTGGAAGAGGAGGAGGACCCACTCATCTTGCTATATTGTCTCAGCCACCTGAGACAATTCACGGTTCACTCCGTGTAACAGTTCAAGGTGAAGTTATTGAACAATCATTTGGAGAGGAGCACTTGTGTTTTAGAACACTTCAGCGTTTCACAGCAGCCACACTAGAGCATGGCATGAATCCCCCAGTTTCGCCGAAGCCAGAATGGCGTGCACTCATGGATGAGATGGCAGTTGTTGCTACGGAGGAATACCGTTCAATAGTTTTCCAGGAACCCCGTTTTGTTGAATACTTTCGCCTTGCAACACCAGAGATGGAGTATGGTCGGATGAACATTGGGAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGCATTGAATCACTTCGAGCAATCCCATGGATCTTTGCATGGACCCAGACAAGATTTCACTTACCAGTGTGGCTTGGTTTTGGGGCAGCATTTAAGCAGGCCTTAGAGAAGGATGCAAAGAATCTTCAGATGCTTCGGGAGATGTATAATCAGTGGCCTTTCTTCAGAGTCACCATTGATTTAATTGAGATGGTGTTTGCCAAGGGAGACCCAGGTATTACAGCTCTTTATGACAAGCTTCTGGTGTCAGAAGACCTATGGTCATTTGGAGAGCGACTGAGGACCAACTATGAAGATACTAAACGCCTCCTACTCCAGGTAAAACTGTCCCTTCATCTGTTTTTATTCATAAAAGTTTTCAAATACTCTTTTCTTTTGGTCTCAATCAAATACTCATTTTTGCATGAAGCTAAAACAAATAATTCGAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

905

Amino Acids

103.71

Weight (kDa)

6.09

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 874	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42600 AT2G42600 AT2G42600
fragaria_vesca	FvH4_6g27390 FvH4_6g27390 FvH4_6g27390 FvH4_6g33320
malus_domestica	MD09G1237900.v1.1 MD17G1230800.v1.1
prunus_persica	Prupe.3G118300_v2.0.a1
pyrus_communis	pycom09g15640 pycom17g23400
rosa_chinensis	RchiOBHm_Chr2g0090101 RchiOBHm_Chr2g0129661
rosa_laevigata	RLG00000016085 RLG00000019094
rosa_multiflora	Rmu_sc0008968.1_g000006 Rmu_sc0009263.1_g000005 Rmu_sc0020548.1_g000003
rosa_roxburghii	Rroxscaffold_2G00114470
rosa_rugosa	Rorug02G0005300 Rorug02G0288200
rosa_samantha	Rh2AG339500 Rh2BG348300 Rh2CG326900 Rh2DG366400
rosa_wichuraiana	Rw2G004560 Rw2G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 1571
AciI	CCGC	3 cut(s)	194, 510, 1599
AclWI	GGATC	8 cut(s)	123, 162, 254, 267, 867, 966, 1760, 2321
AcoI	YGGCCR	2 cut(s)	312, 1900
AcsI	RAATTY	3 cut(s)	758, 1074, 1512
AcuI	CTGAAG	6 cut(s)	119, 345, 467, 2039, 2393, 2431
AcvI	CACGTG	1 cut(s)	1139
AdeI	CACNNNGTG	1 cut(s)	1988
AfaI	GTAC	6 cut(s)	98, 664, 753, 1611, 1742, 1784
AfiI	CCNNNNNNNGG	4 cut(s)	955, 1484, 2282, 2599
AflIII	ACRYGT	2 cut(s)	808, 1136
AgeI	ACCGGT	1 cut(s)	1242
AhdI	GACNNNNNGTC	1 cut(s)	2542
AjnI	CCWGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
AjuI	GAANNNNNNNTTGG	2 cut(s)	2007, 2039
Alw21I	GWGCWC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
Alw26I	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2668
Alw44I	GTGCAC	1 cut(s)	2124
AlwI	GGATC	8 cut(s)	123, 162, 254, 267, 867, 966, 1760, 2321
AlwNI	CAGNNNCTG	1 cut(s)	1219
AoxI	GGCC	7 cut(s)	312, 1402, 1424, 1807, 1900, 2382, 2438
ApaLI	GTGCAC	1 cut(s)	2124
ApeKI	GCWGC	9 cut(s)	5, 653, 929, 1700, 1709, 1820, 1828, 2069, 2369
ApoI	RAATTY	3 cut(s)	758, 1074, 1512
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AsiGI	ACCGGT	1 cut(s)	1242
Asp700I	GAANNNNTTC	5 cut(s)	168, 330, 810, 2205, 2295
AspLEI	GCGC	1 cut(s)	1476
AspS9I	GGNCC	5 cut(s)	214, 1402, 1931, 2325, 2565
AsuHPI	GGTGA	5 cut(s)	278, 1121, 1274, 2015, 2446
AsuII	TTCGAA	1 cut(s)	2708
AvaII	GGWCC	4 cut(s)	214, 1931, 2325, 2565
AxyI	CCTNAGG	1 cut(s)	1185
BaeGI	GKGCMC	1 cut(s)	2128
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	58, 1571
BanII	GRGCYC	2 cut(s)	1464, 1854
BauI	CACGAG	1 cut(s)	1008
BbrPI	CACGTG	1 cut(s)	1139
BbsI	GAAGAC	2 cut(s)	1023, 2541
Bbv12I	GWGCWC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	9 cut(s)	17, 640, 916, 1687, 1696, 1832, 1840, 2081, 2381
BccI	CCATC	8 cut(s)	19, 844, 860, 919, 2134, 2221, 2269, 2467
BceAI	ACGGC	4 cut(s)	1319, 1364, 1626, 1794
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
BcoDI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2668
BfaI	CTAG	3 cut(s)	918, 1340, 2078
BfmI	CTRYAG	3 cut(s)	492, 1731, 1818
BfoI	RGCGCY	1 cut(s)	1477
BglI	GCCNNNNNGGC	2 cut(s)	320, 2119
BglII	AGATCT	1 cut(s)	536
Bme1390I	CCNGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
Bme18I	GGWCC	4 cut(s)	214, 1931, 2325, 2565
BmeRI	GACNNNNNGTC	1 cut(s)	2542
BmgT120I	GGNCC	5 cut(s)	214, 1402, 1931, 2325, 2565
BmrFI	CCNGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
BmrI	ACTGGG	1 cut(s)	2093
BmsI	GCATC	8 cut(s)	28, 91, 1033, 1372, 1610, 1792, 2386, 2403
BmuI	ACTGGG	1 cut(s)	2093
BpiI	GAAGAC	2 cut(s)	1023, 2541
BplI	GAGNNNNNCTC	2 cut(s)	1110, 1142
BpmI	CTGGAG	3 cut(s)	870, 1241, 2582
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	2708
BpuEI	CTTGAG	2 cut(s)	681, 1827
BsaAI	YACGTR	1 cut(s)	1139
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	2 cut(s)	2484, 2668
BsaJI	CCNNGG	9 cut(s)	591, 875, 876, 1399, 1405, 1903, 2309, 2484, 2494
BsaWI	WCCGGW	2 cut(s)	1242, 1749
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 2024, 2054
Bsc4I	CCNNNNNNNGG	4 cut(s)	955, 1484, 2282, 2599
Bse118I	RCCGGY	1 cut(s)	1242
Bse1I	ACTGG	2 cut(s)	2099, 2348
Bse21I	CCTNAGG	1 cut(s)	1185
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
BseDI	CCNNGG	9 cut(s)	591, 875, 876, 1399, 1405, 1903, 2309, 2484, 2494
BseGI	GGATG	9 cut(s)	85, 514, 855, 907, 1048, 1807, 2140, 2247, 2401
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	955, 1484, 2282, 2599
BseNI	ACTGG	2 cut(s)	2099, 2348
BseRI	GAGGAG	4 cut(s)	675, 1938, 1941, 2045
BseSI	GKGCMC	1 cut(s)	2128
BseXI	GCAGC	9 cut(s)	17, 640, 916, 1687, 1696, 1832, 1840, 2081, 2381
BshFI	GGCC	7 cut(s)	314, 1404, 1426, 1809, 1902, 2384, 2440
BshNI	GGYRCC	2 cut(s)	58, 1571
BshTI	ACCGGT	1 cut(s)	1242
BsiHKAI	GWGCWC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
BsiSI	CCGG	2 cut(s)	1243, 1750
BslFI	GGGAC	2 cut(s)	439, 2596
BslI	CCNNNNNNNGG	4 cut(s)	955, 1484, 2282, 2599
BsmAI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2668
BsmBI	CGTCTC	2 cut(s)	413, 728
BsmFI	GGGAC	2 cut(s)	439, 2596
BsmI	GAATGC	1 cut(s)	1643
BsnI	GGCC	7 cut(s)	314, 1404, 1426, 1809, 1902, 2384, 2440
Bso31I	GGTCTC	2 cut(s)	2484, 2668
Bsp119I	TTCGAA	1 cut(s)	2708
Bsp1286I	GDGCHC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
Bsp143I	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
Bsp19I	CCATGG	1 cut(s)	2309
BspACI	CCGC	3 cut(s)	194, 510, 1599
BspANI	GGCC	7 cut(s)	314, 1404, 1426, 1809, 1902, 2384, 2440
BspHI	TCATGA	3 cut(s)	730, 1015, 1773
BspMAI	CTGCAG	1 cut(s)	1822
BspPI	GGATC	8 cut(s)	123, 162, 254, 267, 867, 966, 1760, 2321
BspQI	GCTCTTC	1 cut(s)	1842
BspT104I	TTCGAA	1 cut(s)	2708
BspT107I	GGYRCC	2 cut(s)	58, 1571
BspTNI	GGTCTC	2 cut(s)	2484, 2668
BsrFI	RCCGGY	1 cut(s)	1242
BsrI	ACTGG	2 cut(s)	2099, 2348
BssAI	RCCGGY	1 cut(s)	1242
BssECI	CCNNGG	9 cut(s)	591, 875, 876, 1399, 1405, 1903, 2309, 2484, 2494
BssMI	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	4 cut(s)	591, 1405, 2309, 2484
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
Bst4CI	ACNGT	9 cut(s)	169, 493, 1215, 1236, 1915, 1979, 1996, 2168, 2610
Bst6I	CTCTTC	4 cut(s)	411, 1730, 1842, 1915
BstAPI	GCANNNNNTGC	1 cut(s)	2150
BstBAI	YACGTR	1 cut(s)	1139
BstBI	TTCGAA	1 cut(s)	2708
BstC8I	GCNNGC	6 cut(s)	555, 1686, 1720, 1807, 2124, 2382
BstDSI	CCRYGG	1 cut(s)	2309
BstENI	CCTNNNNNAGG	1 cut(s)	2597
BstF5I	GGATG	9 cut(s)	85, 514, 855, 907, 1048, 1807, 2140, 2247, 2401
BstH2I	RGCGCY	1 cut(s)	1477
BstHHI	GCGC	1 cut(s)	1476
BstKTI	GATC	9 cut(s)	93, 118, 157, 262, 539, 862, 961, 1755, 2316
BstMAI	GTCTC	9 cut(s)	413, 728, 1113, 1330, 1523, 1959, 1961, 2484, 2668
BstMBI	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
BstNI	CCWGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
BstNSI	RCATGY	2 cut(s)	304, 557
BstSCI	CCNGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
BstSFI	CTRYAG	3 cut(s)	492, 1731, 1818
BstSLI	GKGCMC	1 cut(s)	2128
BstV1I	GCAGC	9 cut(s)	17, 640, 916, 1687, 1696, 1832, 1840, 2081, 2381
BstV2I	GAAGAC	2 cut(s)	1023, 2541
BstX2I	RGATCY	5 cut(s)	154, 259, 536, 958, 2313
BstYI	RGATCY	5 cut(s)	154, 259, 536, 958, 2313
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuRI	GGCC	7 cut(s)	314, 1404, 1426, 1809, 1902, 2384, 2440
BtgI	CCRYGG	1 cut(s)	2309
BtsCI	GGATG	9 cut(s)	85, 514, 855, 907, 1048, 1807, 2140, 2247, 2401
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	6 cut(s)	777, 1368, 1471, 1488, 2355, 2441
Cac8I	GCNNGC	6 cut(s)	555, 1686, 1720, 1807, 2124, 2382
CaiI	CAGNNNCTG	1 cut(s)	1219
CciI	TCATGA	3 cut(s)	730, 1015, 1773
CfoI	GCGC	1 cut(s)	1476
Cfr10I	RCCGGY	1 cut(s)	1242
Cfr13I	GGNCC	5 cut(s)	214, 1402, 1931, 2325, 2565
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	6 cut(s)	97, 663, 752, 1610, 1741, 1783
CspAI	ACCGGT	1 cut(s)	1242
CspCI	CAANNNNNGTGG	2 cut(s)	1924, 1959
CviQI	GTAC	6 cut(s)	97, 663, 752, 1610, 1741, 1783
DpnI	GATC	9 cut(s)	92, 117, 156, 261, 538, 861, 960, 1754, 2315
DpnII	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
DraIII	CACNNNGTG	1 cut(s)	1988
DriI	GACNNNNNGTC	1 cut(s)	2542
EaeI	YGGCCR	2 cut(s)	312, 1900
Eam1104I	CTCTTC	4 cut(s)	411, 1730, 1842, 1915
Eam1105I	GACNNNNNGTC	1 cut(s)	2542
EarI	CTCTTC	4 cut(s)	411, 1730, 1842, 1915
Ecl136II	GAGCTC	2 cut(s)	1462, 1852
Eco130I	CCWWGG	4 cut(s)	591, 1405, 2309, 2484
Eco147I	AGGCCT	1 cut(s)	2384
Eco24I	GRGCYC	2 cut(s)	1464, 1854
Eco31I	GGTCTC	2 cut(s)	2484, 2668
Eco47I	GGWCC	4 cut(s)	214, 1931, 2325, 2565
Eco53kI	GAGCTC	2 cut(s)	1462, 1852
Eco57I	CTGAAG	6 cut(s)	119, 345, 467, 2039, 2393, 2431
Eco72I	CACGTG	1 cut(s)	1139
Eco81I	CCTNAGG	1 cut(s)	1185
EcoICRI	GAGCTC	2 cut(s)	1462, 1852
EcoNI	CCTNNNNNAGG	1 cut(s)	2597
EcoO109I	RGGNCCY	2 cut(s)	214, 1931
EcoRII	CCWGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
EcoT14I	CCWWGG	4 cut(s)	591, 1405, 2309, 2484
EcoT38I	GRGCYC	2 cut(s)	1464, 1854
ErhI	CCWWGG	4 cut(s)	591, 1405, 2309, 2484
Esp3I	CGTCTC	2 cut(s)	413, 728
FalI	AAGNNNNNCTT	2 cut(s)	2369, 2401
FaqI	GGGAC	2 cut(s)	439, 2596
FokI	GGATG	9 cut(s)	92, 501, 862, 914, 1055, 1814, 2147, 2254, 2408
FriOI	GRGCYC	2 cut(s)	1464, 1854
FspBI	CTAG	3 cut(s)	918, 1340, 2078
GlaI	GCGC	1 cut(s)	1475
GsuI	CTGGAG	3 cut(s)	870, 1241, 2582
HaeII	RGCGCY	1 cut(s)	1477
HaeIII	GGCC	7 cut(s)	314, 1404, 1426, 1809, 1902, 2384, 2440
HapII	CCGG	2 cut(s)	1243, 1750
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	1 cut(s)	1476
Hin6I	GCGC	1 cut(s)	1474
HinP1I	GCGC	1 cut(s)	1474
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	4 cut(s)	431, 1682, 1883, 2519
HpaII	CCGG	2 cut(s)	1243, 1750
HphI	GGTGA	5 cut(s)	278, 1121, 1274, 2015, 2446
Hpy166II	GTNNAC	6 cut(s)	249, 752, 775, 1142, 1982, 2126
Hpy8I	GTNNAC	6 cut(s)	249, 752, 775, 1142, 1982, 2126
HpyAV	CCTTC	8 cut(s)	197, 345, 361, 672, 1033, 1298, 2386, 2624
HpyCH4III	ACNGT	9 cut(s)	169, 493, 1215, 1236, 1915, 1979, 1996, 2168, 2610
HpyCH4IV	ACGT	5 cut(s)	422, 808, 1138, 1144, 1633
HpySE526I	ACGT	5 cut(s)	422, 808, 1138, 1144, 1633
HspAI	GCGC	1 cut(s)	1474
Kzo9I	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
LguI	GCTCTTC	1 cut(s)	1842
LmnI	GCTCC	4 cut(s)	1222, 1284, 1708, 2032
Lsp1109I	GCAGC	9 cut(s)	17, 640, 916, 1687, 1696, 1832, 1840, 2081, 2381
LweI	GCATC	8 cut(s)	28, 91, 1033, 1372, 1610, 1792, 2386, 2403
MaeI	CTAG	3 cut(s)	918, 1340, 2078
MaeII	ACGT	5 cut(s)	422, 808, 1138, 1144, 1633
MaeIII	GTNAC	8 cut(s)	266, 880, 892, 1238, 1245, 1262, 1990, 2452
MalI	GATC	9 cut(s)	92, 117, 156, 261, 538, 861, 960, 1754, 2315
MboI	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
MfeI	CAATTG	2 cut(s)	33, 1272
MflI	RGATCY	5 cut(s)	154, 259, 536, 958, 2313
MhlI	GDGCHC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	5 cut(s)	263, 413, 676, 2263, 2460
MmeI	TCCRAC	6 cut(s)	93, 207, 387, 713, 1897, 2219
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	5 cut(s)	168, 330, 810, 2205, 2295
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	4 cut(s)	306, 1881, 2376, 2465
MslI	CAYNNNNRTG	1 cut(s)	1371
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	2 cut(s)	1243, 1750
MspR9I	CCNGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
MunI	CAATTG	2 cut(s)	33, 1272
Mva1269I	GAATGC	1 cut(s)	1643
MvaI	CCWGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
NcoI	CCATGG	1 cut(s)	2309
NdeII	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
NmeAIII	GCCGAG	2 cut(s)	794, 1928
NmuCI	GTSAC	5 cut(s)	266, 880, 1245, 1262, 2452
NspI	RCATGY	2 cut(s)	304, 557
NspV	TTCGAA	1 cut(s)	2708
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	3 cut(s)	730, 1015, 1773
PasI	CCCWGGG	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	2384
PciSI	GCTCTTC	1 cut(s)	1842
PcsI	WCGNNNNNNNCGW	1 cut(s)	1639
PctI	GAATGC	1 cut(s)	1643
PdmI	GAANNNNTTC	5 cut(s)	168, 330, 810, 2205, 2295
PfeI	GAWTC	6 cut(s)	646, 1355, 1790, 2092, 2291, 2404
PflFI	GACNNNGTC	1 cut(s)	1326
PfoI	TCCNGGA	2 cut(s)	1218, 2181
PinAI	ACCGGT	1 cut(s)	1242
PleI	GAGTC	5 cut(s)	263, 412, 676, 2262, 2459
PmaCI	CACGTG	1 cut(s)	1139
PmlI	CACGTG	1 cut(s)	1139
PpsI	GAGTC	5 cut(s)	263, 412, 676, 2262, 2459
Ppu21I	YACGTR	1 cut(s)	1139
PpuMI	RGGWCCY	2 cut(s)	214, 1931
Psp124BI	GAGCTC	2 cut(s)	1464, 1854
Psp5II	RGGWCCY	2 cut(s)	214, 1931
Psp6I	CCWGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
PspCI	CACGTG	1 cut(s)	1139
PspGI	CCWGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
PspPI	GGNCC	5 cut(s)	214, 1402, 1931, 2325, 2565
PspPPI	RGGWCCY	2 cut(s)	214, 1931
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstI	CTGCAG	1 cut(s)	1822
PstNI	CAGNNNCTG	1 cut(s)	1219
PsuI	RGATCY	5 cut(s)	154, 259, 536, 958, 2313
PsyI	GACNNNGTC	1 cut(s)	1326
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	6 cut(s)	98, 664, 753, 1611, 1742, 1784
RsaNI	GTAC	6 cut(s)	97, 663, 752, 1610, 1741, 1783
RseI	CAYNNNNRTG	1 cut(s)	1371
SacI	GAGCTC	2 cut(s)	1464, 1854
SapI	GCTCTTC	1 cut(s)	1842
SaqAI	TTAA	4 cut(s)	306, 1881, 2376, 2465
Sau3AI	GATC	9 cut(s)	90, 115, 154, 259, 536, 859, 958, 1752, 2313
Sau96I	GGNCC	5 cut(s)	214, 1402, 1931, 2325, 2565
SchI	GAGTC	5 cut(s)	263, 413, 676, 2263, 2460
ScrFI	CCNGG	8 cut(s)	63, 264, 877, 1220, 1400, 2183, 2496, 2600
SduI	GDGCHC	6 cut(s)	1015, 1150, 1464, 1854, 2037, 2128
SfaNI	GCATC	8 cut(s)	28, 91, 1033, 1372, 1610, 1792, 2386, 2403
SfcI	CTRYAG	3 cut(s)	492, 1731, 1818
SfuI	TTCGAA	1 cut(s)	2708
SinI	GGWCC	4 cut(s)	214, 1931, 2325, 2565
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SmlI	CTYRAG	2 cut(s)	696, 1842
SmoI	CTYRAG	2 cut(s)	696, 1842
SphI	GCATGC	1 cut(s)	557
SseBI	AGGCCT	1 cut(s)	2384
SsiI	CCGC	3 cut(s)	194, 510, 1599
SspMI	CTAG	3 cut(s)	918, 1340, 2078
SstI	GAGCTC	2 cut(s)	1464, 1854
StuI	AGGCCT	1 cut(s)	2384
StyD4I	CCNGG	8 cut(s)	61, 262, 875, 1218, 1398, 2181, 2494, 2598
StyI	CCWWGG	4 cut(s)	591, 1405, 2309, 2484
TaaI	ACNGT	9 cut(s)	169, 493, 1215, 1236, 1915, 1979, 1996, 2168, 2610
TaiI	ACGT	5 cut(s)	425, 811, 1141, 1147, 1636
TaqI	TCGA	7 cut(s)	93, 126, 624, 1230, 1417, 2299, 2708
TatI	WGTACW	1 cut(s)	1609
TauI	GCSGC	1 cut(s)	1601
TfiI	GAWTC	6 cut(s)	646, 1355, 1790, 2092, 2291, 2404
Tru1I	TTAA	4 cut(s)	306, 1881, 2376, 2465
Tru9I	TTAA	4 cut(s)	306, 1881, 2376, 2465
TscAI	CASTG	6 cut(s)	784, 1375, 1471, 1495, 2355, 2441
TseFI	GTSAC	5 cut(s)	266, 880, 1245, 1262, 2452
TseI	GCWGC	9 cut(s)	5, 653, 929, 1700, 1709, 1820, 1828, 2069, 2369
Tsp45I	GTSAC	5 cut(s)	266, 880, 1245, 1262, 2452
TspGWI	ACGGA	2 cut(s)	1976, 2171
TspRI	CASTG	6 cut(s)	784, 1375, 1471, 1495, 2355, 2441
Tth111I	GACNNNGTC	1 cut(s)	1326
VneI	GTGCAC	1 cut(s)	2124
VpaK11BI	GGWCC	4 cut(s)	214, 1931, 2325, 2565
XagI	CCTNNNNNAGG	1 cut(s)	2597
XapI	RAATTY	3 cut(s)	758, 1074, 1512
XceI	RCATGY	2 cut(s)	304, 557
XmnI	GAANNNNTTC	5 cut(s)	168, 330, 810, 2205, 2295
XspI	CTAG	3 cut(s)	918, 1340, 2078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.