Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Reverse (-)

32679947 .. 32680738

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1255300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAATTCCTGGCCTTTTTACTCATCCCATTTCGCCTTCTTTGTTCTCATCAGCATTCCTTTTTCCTCAAGCTTCGATTCGTACACAACTTGTAGCAATACGTTTAACTGTGGAGGCATCACAAAAGTGGGATTTCCCTTTTGGGGAGATGGAAGGCCGGACAATTGTGGCTATCCGGAACTGAAGCTCGCATGCTCGAATGATGTTACCACCATTGAGATTATGGGGGTCAAATACAGATTGTTGATGATTAACCAAGATGAACAGACACTCAAAGTTGTGAGAGATGACTACTATGACAAAATTTGTTCACCAAAGTTTGGGGACACCAAACTCGATTCCAATCTTTTCGACTATGTTTTCGGTTCTTCGGATGTCACGTTACTCTATGATTGTGCTTCTAGCTCACCAGCTGGAGCTTTCAAGTGCCCCGACAACGAAACTTACGCGAATGTGGCTGCAGTACCTGCAGTTGTCCCGGGCACTCCGATTTGTAAGTCAAAGGTGGTTGTTCGGATTAGTGATCCTGCAGGTTTCGGAATATTCAGTATACTGAACGTGACGGCACTTGAAGCTGCAGTGAGAGAAGGGTTTGAGGTGAAGTATAAGGTGGATAGTGGAAAATGTGACGAGTGTGTTGATTCAAGGGGTGTTTGTGGTTGGAATTTGAATGAGACTGTTTGTCACTGCCCAAATCAAATTTCCGAGTCCCGGACTTGTTCCGCCGCCACAACAGCGGCCATAAACAATCCAGCAGCAGTGCCACTGCCACCTGCTAAAGGTATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

264

Amino Acids

28.5

Weight (kDa)

4.87

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	31 - 95	5.3e-16	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	162 - 232	1.6e-11	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	781
Acc36I	ACCTGC	3 cut(s)	475, 521, 781
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	1 cut(s)	449
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	3 cut(s)	723, 726, 737
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	4 cut(s)	4, 303, 664, 699
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	83, 465
AfiI	CCNNNNNNNGG	4 cut(s)	143, 320, 711, 779
AgsI	TTSAA	4 cut(s)	424, 572, 645, 670
AhdI	GACNNNNNGTC	1 cut(s)	681
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	685, 717
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	6 cut(s)	72, 187, 405, 413, 419, 575
AluI	AGCT	6 cut(s)	72, 187, 405, 413, 419, 575
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	11, 155, 738
ApeKI	GCWGC	3 cut(s)	458, 575, 755
ApoI	RAATTY	4 cut(s)	4, 303, 664, 699
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsuC2I	CCSGG	3 cut(s)	479, 480, 712
AsuHPI	GGTGA	3 cut(s)	303, 399, 610
AvaI	CYCGRG	1 cut(s)	478
BaeGI	GKGCMC	2 cut(s)	431, 485
BbvI	GCAGC	3 cut(s)	445, 562, 767
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	3 cut(s)	479, 480, 712
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	4 cut(s)	459, 468, 528, 576
BfuAI	ACCTGC	3 cut(s)	475, 521, 781
BisI	GCNGC	5 cut(s)	459, 576, 726, 738, 756
BlsI	GCNGC	5 cut(s)	460, 577, 727, 739, 757
Bme1390I	CCNGG	4 cut(s)	10, 479, 480, 712
BmeRI	GACNNNNNGTC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	478
BmrFI	CCNGG	4 cut(s)	10, 479, 480, 712
BmsI	GCATC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	3 cut(s)	479, 480, 712
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 320, 711, 779
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	2 cut(s)	23, 379
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	4 cut(s)	143, 320, 711, 779
BseSI	GKGCMC	2 cut(s)	431, 485
BseXI	GCAGC	3 cut(s)	445, 562, 767
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	13, 157, 740
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	4 cut(s)	158, 176, 479, 712
BslFI	GGGAC	3 cut(s)	338, 461, 694
BslI	CCNNNNNNNGG	4 cut(s)	143, 320, 711, 779
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	3 cut(s)	338, 461, 694
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	13, 157, 740
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	2 cut(s)	431, 485
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	3 cut(s)	723, 726, 737
BspANI	GGCC	3 cut(s)	13, 157, 740
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	449
BspMAI	CTGCAG	4 cut(s)	463, 472, 532, 580
BspMI	ACCTGC	3 cut(s)	475, 521, 781
BspPI	GGATC	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	1 cut(s)	523
BssNAI	GTATAC	1 cut(s)	551
Bst1107I	GTATAC	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	110, 679
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	189, 193
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	2 cut(s)	23, 379
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 467, 572, 734
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	4 cut(s)	8, 477, 478, 710
BstSFI	CTRYAG	4 cut(s)	459, 468, 528, 576
BstSLI	GKGCMC	2 cut(s)	431, 485
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	445, 562, 767
BstZ17I	GTATAC	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	13, 157, 740
BtsCI	GGATG	2 cut(s)	23, 379
BtsI	GCAGTG	4 cut(s)	585, 685, 764, 765
BtsIMutI	CAGTG	4 cut(s)	585, 685, 764, 765
BveI	ACCTGC	3 cut(s)	475, 521, 781
Cac8I	GCNNGC	2 cut(s)	189, 193
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr9I	CCCGGG	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	82, 464
CviAII	CATG	1 cut(s)	192
CviQI	GTAC	2 cut(s)	82, 464
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
DriI	GACNNNNNGTC	1 cut(s)	681
EaeI	YGGCCR	1 cut(s)	738
Eam1105I	GACNNNNNGTC	1 cut(s)	681
EciI	GGCGGA	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	195
FaiI	YATR	9 cut(s)	193, 224, 297, 357, 390, 551, 606, 743, 785
FaqI	GGGAC	3 cut(s)	338, 461, 694
FatI	CATG	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	5 cut(s)	459, 576, 726, 738, 756
FokI	GGATG	2 cut(s)	10, 386
Fsp4HI	GCNGC	5 cut(s)	459, 576, 726, 738, 756
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	5 cut(s)	459, 576, 726, 738, 756
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	13, 157, 740
HapII	CCGG	4 cut(s)	158, 176, 479, 712
Hin1II	CATG	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	4 cut(s)	77, 338, 641, 707
HpaII	CCGG	4 cut(s)	158, 176, 479, 712
HphI	GGTGA	3 cut(s)	303, 399, 610
Hpy166II	GTNNAC	3 cut(s)	84, 311, 551
Hpy188I	TCNGA	5 cut(s)	373, 489, 516, 539, 706
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	3 cut(s)	84, 311, 551
HpyAV	CCTTC	3 cut(s)	46, 147, 581
HpyCH4III	ACNGT	2 cut(s)	110, 679
HpyCH4IV	ACGT	3 cut(s)	101, 380, 558
HpyCH4V	TGCA	4 cut(s)	461, 470, 530, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 467, 572, 734
HpySE526I	ACGT	3 cut(s)	101, 380, 558
Hsp92II	CATG	1 cut(s)	195
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	3 cut(s)	445, 562, 767
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	3 cut(s)	101, 380, 558
MaeIII	GTNAC	6 cut(s)	205, 376, 381, 559, 626, 683
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	1 cut(s)	360
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	431, 485
MluCI	AATT	5 cut(s)	4, 163, 303, 664, 699
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	3 cut(s)	76, 107, 589
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	2 cut(s)	105, 252
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	413, 737
MspI	CCGG	4 cut(s)	158, 176, 479, 712
MspR9I	CCNGG	4 cut(s)	10, 479, 480, 712
MunI	CAATTG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	455, 467, 572, 734
NciI	CCSGG	3 cut(s)	479, 480, 712
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	1 cut(s)	195
NmuCI	GTSAC	4 cut(s)	376, 559, 626, 683
NspI	RCATGY	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	77, 338, 641
PflMI	CCANNNNNTGG	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	710
PkrI	GCNGC	5 cut(s)	460, 577, 727, 739, 757
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PstI	CTGCAG	4 cut(s)	463, 472, 532, 580
PstNI	CAGNNNCTG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	83, 465
RsaNI	GTAC	2 cut(s)	82, 464
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	105, 252
SatI	GCNGC	5 cut(s)	459, 576, 726, 738, 756
Sau3AI	GATC	1 cut(s)	523
SbfI	CCTGCAGG	1 cut(s)	532
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	4 cut(s)	10, 479, 480, 712
SdaI	CCTGCAGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	431, 485
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	4 cut(s)	459, 468, 528, 576
SmaI	CCCGGG	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	195
Sse8387I	CCTGCAGG	1 cut(s)	532
Sse9I	AATT	5 cut(s)	4, 163, 303, 664, 699
SsiI	CCGC	3 cut(s)	723, 726, 737
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	4 cut(s)	8, 477, 478, 710
TaaI	ACNGT	2 cut(s)	110, 679
TaiI	ACGT	3 cut(s)	104, 383, 561
TaqI	TCGA	4 cut(s)	75, 197, 336, 351
TasI	AATT	5 cut(s)	4, 163, 303, 664, 699
TauI	GCSGC	2 cut(s)	728, 740
TfiI	GAWTC	3 cut(s)	77, 338, 641
Tru1I	TTAA	2 cut(s)	105, 252
Tru9I	TTAA	2 cut(s)	105, 252
TscAI	CASTG	4 cut(s)	585, 692, 765, 771
TseFI	GTSAC	4 cut(s)	376, 559, 626, 683
TseI	GCWGC	3 cut(s)	458, 575, 755
Tsp45I	GTSAC	4 cut(s)	376, 559, 626, 683
TspDTI	ATGAA	2 cut(s)	17, 276
TspMI	CCCGGG	1 cut(s)	478
TspRI	CASTG	4 cut(s)	585, 692, 765, 771
Van91I	CCANNNNNTGG	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	4 cut(s)	4, 303, 664, 699
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.