Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Reverse (-)

16030830 .. 16031721

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G146700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

TCAAGCTTTGATGGGTACACAAGTTGTAGCAACAAGTTCAACTGTGGAGAGATCACAAACGTTGGTTTTCCTTTCTGGGGATACGGCAGGCCAGAGAGTTGTGGATATCCAGAACTGAATCTCACATGTTCCGAGAGTGTCACCACTATAGGGATTATGGGGGTCCAATACAGAGTGTTGAAGATAAACCAAGAAGCTGAAGAAACACTCAAACTTGTGAGAGATGACTACTATGACAAAATTTGTTCTCCAAAGTTTGGGGACACCAAATTGAATTCCAATCTTTTCGACTATGTTTCAGGCTCTGTTGATGTTAAATTACTGTATGATTGTACTTCTAGCTCACAAGGTGACTTCAGTTGCCCCAAGGGTGAAACTTATGGTAATGTGGCCGCCGTACTTGCAGCTTTTCCGGTGTCTCCCATGTGTAAATCACAGATGGTGATTCGGATTCAGGACTCAATGGGTCTTGGAATCATTAGTTTAGAGAATGTAACAGAACTTGAACAGGCAGTTAGAGAAGGATTTGAGGTGAAGTATAAGGTGGACAGTGCAAAATGTGCTGAGTGTGTTGGTTCAAAGGGTGTTTGTGGTTATGATTGGGGTTTGAGTGAGACTGTTTGCCATTGCCCGAATCAAAGTTCTGCGTCCCGGAATTGTTCTGCCACAGCAGAGGCCATAGACAATCCAGTTTTGCCATCAGCTAAAGTGTTCAACATGACTTCATTTTGTCCCATGGACATGGACTTGTGTGCAAGAGGACTGCAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

259

Amino Acids

28.12

Weight (kDa)

4.74

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	1 cut(s)	393
AclI	AACGTT	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	3 cut(s)	240, 274, 770
AcuI	CTGAAG	2 cut(s)	219, 340
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	3 cut(s)	17, 334, 399
AfiI	CCNNNNNNNGG	3 cut(s)	77, 150, 257
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	6 cut(s)	40, 181, 274, 506, 579, 715
AluBI	AGCT	5 cut(s)	6, 197, 342, 407, 704
AluI	AGCT	5 cut(s)	6, 197, 342, 407, 704
Alw26I	GTCTC	2 cut(s)	423, 608
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	89, 390, 675
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	3 cut(s)	240, 274, 770
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	5 cut(s)	133, 362, 383, 454, 544
AvaII	GGWCC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	3 cut(s)	5, 433, 706
BceAI	ACGGC	2 cut(s)	100, 380
BciVI	GTATCC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	423, 608
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	147, 764
BfuI	GTATCC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	393, 405
BlsI	GCNGC	2 cut(s)	394, 406
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	366, 735
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 150, 257
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	366, 735
BseLI	CCNNNNNNNGG	3 cut(s)	77, 150, 257
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	416
BshFI	GGCC	3 cut(s)	91, 392, 677
BsiSI	CCGG	2 cut(s)	413, 652
BslFI	GGGAC	3 cut(s)	275, 634, 717
BslI	CCNNNNNNNGG	3 cut(s)	77, 150, 257
BsmAI	GTCTC	2 cut(s)	423, 608
BsmFI	GGGAC	3 cut(s)	275, 634, 717
BsnI	GGCC	3 cut(s)	91, 392, 677
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	91, 392, 677
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	366, 735
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	366, 735
Bst4CI	ACNGT	4 cut(s)	44, 324, 551, 619
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	735
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	423, 608
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 560
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	147, 764
BstV1I	GCAGC	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	91, 392, 677
BtgI	CCRYGG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	3 cut(s)	16, 333, 398
CviAII	CATG	5 cut(s)	126, 424, 718, 736, 742
CviJI	RGCY	9 cut(s)	6, 91, 197, 303, 342, 392, 407, 677, 704
CviKI_1	RGCY	9 cut(s)	6, 91, 197, 303, 342, 392, 407, 677, 704
CviQI	GTAC	3 cut(s)	16, 333, 398
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraIII	CACNNNGTG	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	366, 735
Eco32I	GATATC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	219, 340
EcoRI	GAATTC	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	366, 735
ErhI	CCWWGG	2 cut(s)	366, 735
FaeI	CATG	5 cut(s)	129, 427, 721, 739, 745
FaqI	GGGAC	3 cut(s)	275, 634, 717
FatI	CATG	5 cut(s)	125, 423, 717, 735, 741
Fnu4HI	GCNGC	2 cut(s)	393, 405
Fsp4HI	GCNGC	2 cut(s)	393, 405
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	393, 405
HaeIII	GGCC	3 cut(s)	91, 392, 677
HapII	CCGG	2 cut(s)	413, 652
HgaI	GACGC	1 cut(s)	636
Hin1II	CATG	5 cut(s)	129, 427, 721, 739, 745
HindIII	AAGCTT	1 cut(s)	4
HinfI	GANTC	6 cut(s)	118, 445, 451, 458, 474, 634
HpaII	CCGG	2 cut(s)	413, 652
HphI	GGTGA	5 cut(s)	133, 362, 383, 454, 544
Hpy166II	GTNNAC	2 cut(s)	18, 547
Hpy188I	TCNGA	2 cut(s)	133, 450
Hpy188III	TCNNGA	2 cut(s)	110, 455
Hpy8I	GTNNAC	2 cut(s)	18, 547
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	4 cut(s)	44, 324, 551, 619
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	404, 554, 755, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 560
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	129, 427, 721, 739, 745
Kzo9I	GATC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	139, 350, 493
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	193, 212
MluCI	AATT	6 cut(s)	240, 269, 274, 317, 655, 770
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	3 cut(s)	523, 667, 752
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	740
MspI	CCGG	2 cut(s)	413, 652
MspR9I	CCNGG	1 cut(s)	652
MwoI	GCNNNNNNNGC	2 cut(s)	401, 560
NciI	CCSGG	1 cut(s)	652
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	5 cut(s)	129, 427, 721, 739, 745
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	139, 350
NspI	RCATGY	1 cut(s)	129
PciI	ACATGT	1 cut(s)	125
PfeI	GAWTC	5 cut(s)	118, 445, 451, 474, 634
PflMI	CCANNNNNTGG	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	650
PkrI	GCNGC	2 cut(s)	394, 406
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PscI	ACATGT	1 cut(s)	125
Psp1406I	AACGTT	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	3 cut(s)	17, 334, 399
RsaNI	GTAC	3 cut(s)	16, 333, 398
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	393, 405
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	652
SetI	ASST	9 cut(s)	8, 63, 199, 344, 352, 409, 534, 546, 706
SfcI	CTRYAG	2 cut(s)	147, 764
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	740
Sse9I	AATT	6 cut(s)	240, 269, 274, 317, 655, 770
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	2 cut(s)	366, 735
TaaI	ACNGT	4 cut(s)	44, 324, 551, 619
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	288
TasI	AATT	6 cut(s)	240, 269, 274, 317, 655, 770
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	5 cut(s)	118, 445, 451, 474, 634
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	139, 350
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	2 cut(s)	139, 350
TspDTI	ATGAA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	556
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	3 cut(s)	240, 274, 770
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.