Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Forward (+)

35700803 .. 35708811

Gene Structure 8009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGAATTCCTTTGTGCTATTTCAGTCCTCTTTGATTCCTTTGCTTTTGATCACTTCCTTTCTGTCGATCAATTTTCAATTGAGTGTGCGCGCCGATGATACAGCAGTGGAATATGCCAACTGCATCCAACCTATTACCTGCGGGAGCGTCAAAAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGACCCGAATACTGTGGCAAATCTGGGTTTGAGGTCACATGCGAAGCCAACGTCCCAATGATCACCATGAGGAATATCAAGTTCAGAATTCTTGACATGAGCAATATTAGTACTACAACAACTCCTACTGTAAAAGTTGCTAGGCAGGATTACTGGGAAGATACCTGTCCCTCGACATATGTTTCCACAACCCTCGACTTCTCTCTCTTCACTTACTCTTCTGGGCTTCTGAACGTGTCTTTTTGGTACGGATGCAATGCAACCGTAACAACCGTAACAATCACAGGGAATTCGCAGTTCTGCAACAGTAGCGTCACTGCTGTCTATCTCACACAGACGAGAGCTAGTACTATTGTCCCAATTGATCCAGTTACTACGGGCGCCTGTCAATATAGGGTTTTGGTTCCGGTATTTGAATCCGCTTCTGCGGCTCTGGACAGCAATACTACAGATATTGAGACTGCGATAGATGGTGGGTTTGAATTGGATGTGCTAAATGCTGATACTGGCTCCTGCAACAATTGCTTGGCATCAGGGGGAGCTTGTGGGCAAAGCACTACTGGTGCCAACGAATTCATGTGCTTTTGCCCGACTAATTCATCTTCGACAACCACATGTACTGAAAACTCTGCATCAGCTCCAAATTCAGCTCCATCCGGTTCAGGAAACAAAAGCCAAATAGCAATAGGTCTTGCTGTAGGAGGTGCAATCCTTTTTGGCATTTTCGTGGGATTCTACACATATTATGTCATCCAGCGAAAGAAGAAGAAACGTACAGCAGAAGCTCAGAGCAAAGAGATTCCCACTCCACTTACAAGCAAAAGCACTGTTACTCCCTCGACTAATCTTTCTCAATCTCAAAGCATCCCTTCTTATCCTTCCTTTAACTCAAAATCAAGGTCTGACCTTGGAAAAGCCAGCACTTACTTTGGAGTTCAGGTCTTCAGCTATGCTGAATTAGAGGAAGCCACTGAAAATTTCAACCCTGCTAAAGAACTTGGAGATGGAGGCTTTGGCACCGTTTACTATGGTAAGCTACAAGATGGCCGTGTAGTTGCAGTGAAGCGCCTTTATGAAAACAATTTCAAACGGGTGGAGCAGTTTATGAATGAGGTTGAAATCTTAACACGTCTAGAACACCAGCATCTTGTGAAACTCTATGGATGCACCTCAAGACGTAGCCGAGAACTCCTCCTTGTCTATGAATATATTTCTAATGGAACAGTGGCTGACCATCTCCATGGAAAACGAATGGAGTCTGGTTTTCTCAGTTGGCCTGTTAGATTGAGCATCGCCATAGAGACAGCTGATGCACTGGCTTTCCTTCATCGCAATGATGTGATACACCGTGATGTCAAAACCAACAATATACTTCTGGATGACGACTTTTGTGTGAAAGTTGCTGATTTTGGTCTGTCACGGTTGTTCCCCAATGATCAGACCCATGTGTCAACTGCTCCACAAGGGACGCCGGGCTATGTTGATCCCGAGTATTACCAGTGCTATCAACTCACTGACAAAAGTGATGTTTATAGCTTTGGGGTCGTCTTGATCGAGCTTATATCATCCTTACAAGCTGTTGACACCAACAGGCACCGGCATGATATAAATTTGGCCAACATGGCTATCAACAAAATTCAAAATCATTTGGTGAATGAGTTGGTTGATCCACTTCTTGGGTATGACAAGGACTATTCTGTGAGGATAATGGCAACAGCTGTTGCAGAATTGGCCTTCCGGTGTTTGCAGCAGGAGAAAGATATGAGACCAACCATGGAAGAAGTACTGGAGGGTTTAAAAGCAATCCAAAGTGAAGACCTTGGTGCACAAGAAAATGGGGAGGCAGAGGCAGTGGTCCTGGATATAGGGGCTGATGAAGTTGGGCTTTTGAGGAATCTGCCTCCCCCACTCTCACCAGACTCGGTTGTCACTGATAAATTGGTTAGCAGCTCTCCCACACCTAGTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

719

Amino Acids

78.7

Weight (kDa)

4.98

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	43 - 101	5.6e-13	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	186 - 259	2.4e-12	Wall-associated receptor kinase C-terminal
Pkinase	PF00069	391 - 659	1.6e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	392 - 660	1.1e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1633, 2111
Acc36I	ACCTGC	1 cut(s)	146
AccB1I	GGYRCC	4 cut(s)	566, 749, 1202, 1779
AccB7I	CCANNNNNTGG	1 cut(s)	1862
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	141, 606, 614
AclWI	GGATC	3 cut(s)	545, 1664, 1847
AcoI	YGGCCR	2 cut(s)	1231, 1800
AcsI	RAATTY	8 cut(s)	4, 273, 475, 758, 829, 1162, 1795, 1821
AcuI	CTGAAG	1 cut(s)	1114
AcyI	GRCGYC	2 cut(s)	567, 1655
AfaI	GTAC	6 cut(s)	298, 434, 535, 805, 961, 1971
AfiI	CCNNNNNNNGG	3 cut(s)	175, 176, 1862
AflIII	ACRYGT	3 cut(s)	420, 800, 1313
AgsI	TTSAA	7 cut(s)	77, 602, 668, 1168, 1273, 1304, 1826
AjiI	CACGTC	1 cut(s)	1316
AjnI	CCWGG	1 cut(s)	2043
Alw21I	GWGCWC	1 cut(s)	2014
Alw26I	GTCTC	3 cut(s)	638, 1481, 1945
Alw44I	GTGCAC	1 cut(s)	2010
AlwI	GGATC	3 cut(s)	545, 1664, 1847
AlwNI	CAGNNNCTG	1 cut(s)	1415
Ama87I	CYCGRG	1 cut(s)	1673
AoxI	GGCC	4 cut(s)	1231, 1460, 1800, 1917
ApaLI	GTGCAC	1 cut(s)	2010
ApeKI	GCWGC	2 cut(s)	1933, 2133
ApoI	RAATTY	8 cut(s)	4, 273, 475, 758, 829, 1162, 1795, 1821
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 254, 1070, 1102
AspLEI	GCGC	4 cut(s)	90, 92, 569, 1254
AspS9I	GGNCC	1 cut(s)	2041
AsuC2I	CCSGG	1 cut(s)	1659
AsuHPI	GGTGA	3 cut(s)	241, 1849, 2091
AvaI	CYCGRG	1 cut(s)	1673
AvaII	GGWCC	1 cut(s)	2041
BaeGI	GKGCMC	1 cut(s)	2014
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	1802
BanI	GGYRCC	4 cut(s)	566, 749, 1202, 1779
BbsI	GAAGAC	2 cut(s)	1120, 2007
Bbv12I	GWGCWC	1 cut(s)	2014
BbvI	GCAGC	2 cut(s)	1945, 2145
BccI	CCATC	5 cut(s)	650, 847, 1184, 1223, 1428
BceAI	ACGGC	1 cut(s)	1218
BciT130I	CCWGG	1 cut(s)	2045
BclI	TGATCA	3 cut(s)	48, 246, 1621
BcnI	CCSGG	1 cut(s)	1659
BcoDI	GTCTC	3 cut(s)	638, 1481, 1945
BfaI	CTAG	4 cut(s)	327, 531, 1319, 2148
BfmI	CTRYAG	2 cut(s)	633, 882
BfoI	RGCGCY	2 cut(s)	570, 1255
BfuAI	ACCTGC	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	1808
BisI	GCNGC	3 cut(s)	615, 1934, 2134
BlsI	GCNGC	3 cut(s)	616, 1935, 2135
BmcAI	AGTACT	3 cut(s)	298, 535, 1971
Bme1390I	CCNGG	2 cut(s)	1659, 2045
Bme18I	GGWCC	1 cut(s)	2041
BmeT110I	CYCGRG	1 cut(s)	1673
BmgBI	CACGTC	1 cut(s)	1316
BmgT120I	GGNCC	1 cut(s)	2041
BmiI	GGNNCC	6 cut(s)	568, 591, 697, 751, 1204, 1781
BmrFI	CCNGG	2 cut(s)	1659, 2045
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	9 cut(s)	132, 428, 725, 827, 1059, 1339, 1340, 1485, 1486
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	1120, 2007
BplI	GAGNNNNNCTC	2 cut(s)	1362, 1394
BpmI	CTGGAG	1 cut(s)	1994
BpuEI	CTTGAG	1 cut(s)	1342
BpuMI	CCSGG	1 cut(s)	1659
BsaHI	GRCGYC	2 cut(s)	567, 1655
BsaI	GGTCTC	1 cut(s)	1945
BsaJI	CCNNGG	4 cut(s)	1093, 1426, 1959, 2005
BsaWI	WCCGGW	3 cut(s)	592, 842, 1923
BsaXI	ACNNNNNCTCC	6 cut(s)	292, 322, 1003, 1033, 1110, 1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 176, 1862
Bse118I	RCCGGY	1 cut(s)	1782
Bse1I	ACTGG	7 cut(s)	344, 554, 697, 751, 1506, 1684, 1977
Bse3DI	GCAATG	2 cut(s)	448, 1525
BseBI	CCWGG	1 cut(s)	2045
BseDI	CCNNGG	4 cut(s)	1093, 1426, 1959, 2005
BseGI	GGATG	9 cut(s)	123, 443, 679, 839, 936, 1050, 1355, 1570, 1751
BseLI	CCNNNNNNNGG	3 cut(s)	175, 176, 1862
BseMI	GCAATG	2 cut(s)	448, 1525
BseMII	CTCAG	2 cut(s)	986, 1468
BseNI	ACTGG	7 cut(s)	344, 554, 697, 751, 1506, 1684, 1977
BsePI	GCGCGC	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	1367
BseSI	GKGCMC	1 cut(s)	2014
BseXI	GCAGC	2 cut(s)	1945, 2145
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	1233, 1462, 1802, 1919
BshNI	GGYRCC	4 cut(s)	566, 749, 1202, 1779
BsiHKAI	GWGCWC	1 cut(s)	2014
BsiHKCI	CYCGRG	1 cut(s)	1673
BsiSI	CCGG	5 cut(s)	593, 843, 1658, 1783, 1924
BslFI	GGGAC	4 cut(s)	224, 339, 527, 1666
BslI	CCNNNNNNNGG	3 cut(s)	175, 176, 1862
BsmAI	GTCTC	3 cut(s)	638, 1481, 1945
BsmFI	GGGAC	4 cut(s)	224, 339, 527, 1666
BsnI	GGCC	4 cut(s)	1233, 1462, 1802, 1919
Bso31I	GGTCTC	1 cut(s)	1945
BsoBI	CYCGRG	1 cut(s)	1673
Bsp1286I	GDGCHC	1 cut(s)	2014
Bsp143I	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
Bsp19I	CCATGG	2 cut(s)	1426, 1959
BspACI	CCGC	3 cut(s)	141, 606, 614
BspANI	GGCC	4 cut(s)	1233, 1462, 1802, 1919
BspCNI	CTCAG	2 cut(s)	985, 1467
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	6 cut(s)	568, 591, 697, 751, 1204, 1781
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	545, 1664, 1847
BspT107I	GGYRCC	4 cut(s)	566, 749, 1202, 1779
BspTNI	GGTCTC	1 cut(s)	1945
BsrDI	GCAATG	2 cut(s)	448, 1525
BsrFI	RCCGGY	1 cut(s)	1782
BsrI	ACTGG	7 cut(s)	344, 554, 697, 751, 1506, 1684, 1977
BssAI	RCCGGY	1 cut(s)	1782
BssECI	CCNNGG	4 cut(s)	1093, 1426, 1959, 2005
BssHII	GCGCGC	1 cut(s)	88
BssMI	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
BssNI	GRCGYC	2 cut(s)	567, 1655
BssT1I	CCWWGG	4 cut(s)	1093, 1426, 1959, 2005
Bst2UI	CCWGG	1 cut(s)	2045
Bst6I	CTCTTC	2 cut(s)	398, 409
BstACI	GRCGYC	2 cut(s)	567, 1655
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	90, 1105
BstDEI	CTNAG	2 cut(s)	972, 1454
BstDSI	CCRYGG	2 cut(s)	1426, 1959
BstF5I	GGATG	9 cut(s)	123, 443, 679, 839, 936, 1050, 1355, 1570, 1751
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	2 cut(s)	570, 1255
BstHHI	GCGC	4 cut(s)	90, 92, 569, 1254
BstKTI	GATC	8 cut(s)	51, 69, 249, 553, 1624, 1672, 1740, 1855
BstMAI	GTCTC	3 cut(s)	638, 1481, 1945
BstMBI	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 495, 614, 708, 1808, 1916
BstNI	CCWGG	1 cut(s)	2045
BstNSI	RCATGY	2 cut(s)	228, 804
BstSCI	CCNGG	2 cut(s)	1657, 2043
BstSFI	CTRYAG	2 cut(s)	633, 882
BstSLI	GKGCMC	1 cut(s)	2014
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	1945, 2145
BstV2I	GAAGAC	2 cut(s)	1120, 2007
BstXI	CCANNNNNNTGG	1 cut(s)	1427
BsuRI	GGCC	4 cut(s)	1233, 1462, 1802, 1919
BtgI	CCRYGG	2 cut(s)	1426, 1959
BtgZI	GCGATG	2 cut(s)	1462, 1499
BtrI	CACGTC	1 cut(s)	1316
BtsCI	GGATG	9 cut(s)	123, 443, 679, 839, 936, 1050, 1355, 1570, 1751
BtsI	GCAGTG	4 cut(s)	111, 501, 1251, 2043
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	90, 1105
CaiI	CAGNNNCTG	1 cut(s)	1415
CfoI	GCGC	4 cut(s)	90, 92, 569, 1254
Cfr10I	RCCGGY	1 cut(s)	1782
Cfr13I	GGNCC	1 cut(s)	2041
CseI	GACGC	3 cut(s)	136, 487, 1663
Csp6I	GTAC	6 cut(s)	297, 433, 534, 804, 960, 1970
CviQI	GTAC	6 cut(s)	297, 433, 534, 804, 960, 1970
DdeI	CTNAG	2 cut(s)	972, 1454
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	8 cut(s)	50, 68, 248, 552, 1623, 1671, 1739, 1854
DpnII	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
DraI	TTTAAA	1 cut(s)	1983
DrdI	GACNNNNNNGTC	2 cut(s)	1633, 2111
DseDI	GACNNNNNNGTC	2 cut(s)	1633, 2111
EaeI	YGGCCR	2 cut(s)	1231, 1800
Eam1104I	CTCTTC	2 cut(s)	398, 409
EarI	CTCTTC	2 cut(s)	398, 409
Eco130I	CCWWGG	4 cut(s)	1093, 1426, 1959, 2005
Eco31I	GGTCTC	1 cut(s)	1945
Eco47I	GGWCC	1 cut(s)	2041
Eco57I	CTGAAG	1 cut(s)	1114
Eco88I	CYCGRG	1 cut(s)	1673
EcoRI	GAATTC	4 cut(s)	4, 273, 475, 758
EcoRII	CCWGG	1 cut(s)	2043
EcoT14I	CCWWGG	4 cut(s)	1093, 1426, 1959, 2005
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	4 cut(s)	1093, 1426, 1959, 2005
FalI	AAGNNNNNCTT	4 cut(s)	1039, 1071, 2055, 2087
FaqI	GGGAC	4 cut(s)	224, 339, 527, 1666
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	3 cut(s)	48, 246, 1621
Fnu4HI	GCNGC	3 cut(s)	615, 1934, 2134
FokI	GGATG	9 cut(s)	110, 450, 686, 826, 923, 1037, 1362, 1577, 1738
Fsp4HI	GCNGC	3 cut(s)	615, 1934, 2134
FspBI	CTAG	4 cut(s)	327, 531, 1319, 2148
GlaI	GCGC	4 cut(s)	89, 91, 568, 1253
GluI	GCNGC	3 cut(s)	615, 1934, 2134
GsuI	CTGGAG	1 cut(s)	1994
HaeII	RGCGCY	2 cut(s)	570, 1255
HaeIII	GGCC	4 cut(s)	1233, 1462, 1802, 1919
HapII	CCGG	5 cut(s)	593, 843, 1658, 1783, 1924
HgaI	GACGC	3 cut(s)	136, 487, 1663
HhaI	GCGC	4 cut(s)	90, 92, 569, 1254
Hin1I	GRCGYC	2 cut(s)	567, 1655
Hin6I	GCGC	4 cut(s)	88, 90, 567, 1252
HinP1I	GCGC	4 cut(s)	88, 90, 567, 1252
HincII	GTYRAC	2 cut(s)	1638, 1768
HindII	GTYRAC	2 cut(s)	1638, 1768
HinfI	GANTC	7 cut(s)	34, 602, 918, 985, 1442, 2080, 2105
HpaII	CCGG	5 cut(s)	593, 843, 1658, 1783, 1924
HphI	GGTGA	3 cut(s)	241, 1849, 2091
Hpy166II	GTNNAC	4 cut(s)	1210, 1638, 1768, 2012
Hpy188I	TCNGA	5 cut(s)	272, 417, 975, 1090, 1626
Hpy188III	TCNNGA	8 cut(s)	278, 620, 849, 1319, 1359, 1562, 1673, 1735
Hpy8I	GTNNAC	4 cut(s)	1210, 1638, 1768, 2012
HpyAV	CCTTC	4 cut(s)	1065, 1074, 1520, 1930
HpyCH4IV	ACGT	5 cut(s)	237, 420, 958, 1315, 1363
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 495, 614, 708, 1808, 1916
HpyF3I	CTNAG	2 cut(s)	972, 1454
HpySE526I	ACGT	5 cut(s)	237, 420, 958, 1315, 1363
Hsp92I	GRCGYC	2 cut(s)	567, 1655
HspAI	GCGC	4 cut(s)	88, 90, 567, 1252
KasI	GGCGCC	1 cut(s)	566
Ksp22I	TGATCA	3 cut(s)	48, 246, 1621
Kzo9I	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
LmnI	GCTCC	8 cut(s)	144, 179, 701, 725, 829, 841, 1282, 1648
Lsp1109I	GCAGC	2 cut(s)	1945, 2145
LweI	GCATC	9 cut(s)	132, 428, 725, 827, 1059, 1339, 1340, 1485, 1486
MaeI	CTAG	4 cut(s)	327, 531, 1319, 2148
MaeII	ACGT	5 cut(s)	237, 420, 958, 1315, 1363
MaeIII	GTNAC	8 cut(s)	220, 451, 460, 499, 556, 1015, 1602, 2113
MalI	GATC	8 cut(s)	50, 68, 248, 552, 1623, 1671, 1739, 1854
MboI	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
MboII	GAAGA	9 cut(s)	356, 385, 396, 780, 961, 964, 1120, 1976, 2012
MfeI	CAATTG	3 cut(s)	77, 546, 706
MhlI	GDGCHC	1 cut(s)	2014
MlsI	TGGCCA	1 cut(s)	1802
MluNI	TGGCCA	1 cut(s)	1802
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	2 cut(s)	1451, 2099
MmeI	TCCRAC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	1802
MscI	TGGCCA	1 cut(s)	1802
MseI	TTAA	3 cut(s)	1071, 1310, 1982
MslI	CAYNNNNRTG	5 cut(s)	911, 1425, 1518, 1536, 1785
Msp20I	TGGCCA	1 cut(s)	1802
MspA1I	CMGCKG	2 cut(s)	1493, 1904
MspI	CCGG	5 cut(s)	593, 843, 1658, 1783, 1924
MspR9I	CCNGG	2 cut(s)	1659, 2045
MunI	CAATTG	3 cut(s)	77, 546, 706
MvaI	CCWGG	1 cut(s)	2045
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	6 cut(s)	153, 495, 614, 708, 1808, 1916
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	1 cut(s)	1659
NcoI	CCATGG	2 cut(s)	1426, 1959
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
NlaIV	GGNNCC	6 cut(s)	568, 591, 697, 751, 1204, 1781
NmeAIII	GCCGAG	1 cut(s)	1394
NmuCI	GTSAC	4 cut(s)	220, 499, 1602, 2113
NspI	RCATGY	2 cut(s)	228, 804
PauI	GCGCGC	1 cut(s)	88
PciI	ACATGT	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	1737
PfeI	GAWTC	5 cut(s)	34, 602, 918, 985, 2080
PflMI	CCANNNNNTGG	1 cut(s)	1862
PfoI	TCCNGGA	1 cut(s)	2043
PkrI	GCNGC	3 cut(s)	616, 1935, 2135
PleI	GAGTC	2 cut(s)	1450, 2099
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	2 cut(s)	1450, 2099
PscI	ACATGT	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	2043
PspGI	CCWGG	1 cut(s)	2043
PspN4I	GGNNCC	6 cut(s)	568, 591, 697, 751, 1204, 1781
PspPI	GGNCC	1 cut(s)	2041
PstNI	CAGNNNCTG	1 cut(s)	1415
PteI	GCGCGC	1 cut(s)	88
PvuII	CAGCTG	2 cut(s)	1493, 1904
RsaI	GTAC	6 cut(s)	298, 434, 535, 805, 961, 1971
RsaNI	GTAC	6 cut(s)	297, 433, 534, 804, 960, 1970
RseI	CAYNNNNRTG	5 cut(s)	911, 1425, 1518, 1536, 1785
SaqAI	TTAA	3 cut(s)	1071, 1310, 1982
SatI	GCNGC	3 cut(s)	615, 1934, 2134
Sau3AI	GATC	8 cut(s)	48, 66, 246, 550, 1621, 1669, 1737, 1852
Sau96I	GGNCC	1 cut(s)	2041
ScaI	AGTACT	3 cut(s)	298, 535, 1971
SchI	GAGTC	2 cut(s)	1451, 2099
ScrFI	CCNGG	2 cut(s)	1659, 2045
SduI	GDGCHC	1 cut(s)	2014
SfaNI	GCATC	9 cut(s)	132, 428, 725, 827, 1059, 1339, 1340, 1485, 1486
SfcI	CTRYAG	2 cut(s)	633, 882
SfoI	GGCGCC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	2041
SmiMI	CAYNNNNRTG	5 cut(s)	911, 1425, 1518, 1536, 1785
SmlI	CTYRAG	1 cut(s)	1357
SmoI	CTYRAG	1 cut(s)	1357
SsiI	CCGC	3 cut(s)	141, 606, 614
SspDI	GGCGCC	1 cut(s)	566
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	4 cut(s)	327, 531, 1319, 2148
StyD4I	CCNGG	2 cut(s)	1657, 2043
StyI	CCWWGG	4 cut(s)	1093, 1426, 1959, 2005
TaiI	ACGT	5 cut(s)	240, 423, 961, 1318, 1366
TaqI	TCGA	6 cut(s)	65, 359, 381, 791, 1025, 1740
TatI	WGTACW	4 cut(s)	296, 533, 803, 1969
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	5 cut(s)	34, 602, 918, 985, 2080
Tru1I	TTAA	3 cut(s)	1071, 1310, 1982
Tru9I	TTAA	3 cut(s)	1071, 1310, 1982
TseFI	GTSAC	4 cut(s)	220, 499, 1602, 2113
TseI	GCWGC	2 cut(s)	1933, 2133
Tsp45I	GTSAC	4 cut(s)	220, 499, 1602, 2113
TspDTI	ATGAA	8 cut(s)	17, 751, 774, 1275, 1307, 1404, 1502, 2076
TspGWI	ACGGA	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	1862
VneI	GTGCAC	1 cut(s)	2010
VpaK11BI	GGWCC	1 cut(s)	2041
XapI	RAATTY	8 cut(s)	4, 273, 475, 758, 829, 1162, 1795, 1821
XbaI	TCTAGA	1 cut(s)	1318
XceI	RCATGY	2 cut(s)	228, 804
XspI	CTAG	4 cut(s)	327, 531, 1319, 2148
ZrmI	AGTACT	3 cut(s)	298, 535, 1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.