Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Reverse (-)

29689741 .. 29692291

Gene Structure 2551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1248000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAATTCCTGGTTTTTCTTCTCATCCCATTTCGCCTTCTTCGTTTTCATCAACTTTCCTTTGTCCTCAAGCTTCGATTCGTACACATATTGTAGTAACGCGTTTAATTGTGGAGACATCACAGAAGTGGGATTTCCCTTTTGGGGAGATGGAAGGCCGGAGAGTTGCGGCTATCCGGAACTGAAGCTAACATGCTCGAACGATGTTACCGCCATTGAGATTATGGGGGTCAAATACAGATTGCTGAAGATTAACCAAGGTGACCAGACACTCAAAATTGTAAGAGATGACTACTGTGACAAAGTTTGTTCGCCGAAGTTTGGGGATACCAAACTCAATTCCAAACTTTTTGACTACGTTGTTGGGTCTTCGGACGTCACTTTACTCTATGATTGTACTTCTAGCTCAAAAGCTGAAGATTTCAGCTGCCCCGACGATGAAGCATATGAGGATGTGGCCGCTATACCTGCAGATGTCCCGGAATCTCCGATGTGCAAGTCAAAAGTGGTTGTTCGGATTAGTGATGCAGCGTTTTTCAGAATCTTGGGTATACAGAACGCGACGGCGCTTGAAGTTGTAGTGAGGGAAGGGTTTGAGGTGAAGTATAAGGTGGATAGTGAAAAATGTGGTGAGTGTGTTAGTTCAAAGGGTGTTTGTGGCTATGATTGGAATTTGAATGAAACTGTTTGTCATTGCGCAAATCAAGCTTCTGAGTCCCGGACTTGTTCCGCCGCCACAGCAGAGGCCATTGACAATCCAGCAGCAGTGCCACCACCAGCTAAAGGAGAAGAGGCAGAGGAGAGAGAGATTAGGAGGAGAGAAAATCCTTCCCCCTCAAGTCACGCCAATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

285

Amino Acids

31.34

Weight (kDa)

4.63

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	31 - 95	1.8e-16	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	160 - 234	3.8e-14	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
Acc16I	TGCGCA	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	2 cut(s)	101, 560
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	5 cut(s)	168, 210, 459, 729, 732
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	4, 670
AcuI	CTGAAG	3 cut(s)	203, 266, 435
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	83, 397
AfiI	CCNNNNNNNGG	3 cut(s)	143, 320, 782
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	572, 645, 676
AjnI	CCWGG	1 cut(s)	8
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	7 cut(s)	72, 187, 405, 413, 426, 707, 779
AluI	AGCT	7 cut(s)	72, 187, 405, 413, 426, 707, 779
Alw26I	GTCTC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	155, 456, 744
ApeKI	GCWGC	3 cut(s)	426, 527, 761
ApoI	RAATTY	2 cut(s)	4, 670
AspLEI	GCGC	2 cut(s)	568, 698
AsuC2I	CCSGG	2 cut(s)	479, 718
AsuHPI	GGTGA	3 cut(s)	272, 610, 641
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	413, 539, 773
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	479, 718
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	169, 427, 459, 528, 732, 762
BlsI	GCNGC	6 cut(s)	170, 428, 460, 529, 733, 763
Bme1390I	CCNGG	3 cut(s)	10, 479, 718
BmrFI	CCNGG	3 cut(s)	10, 479, 718
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	52, 820
BpuMI	CCSGG	2 cut(s)	479, 718
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 320, 782
Bse3DI	GCAATG	1 cut(s)	691
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	23, 457
BseLI	CCNNNNNNNGG	3 cut(s)	143, 320, 782
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	812, 829
BseXI	GCAGC	3 cut(s)	413, 539, 773
Bsh1236I	CGCG	2 cut(s)	101, 560
BshFI	GGCC	3 cut(s)	157, 458, 746
BsiSI	CCGG	4 cut(s)	158, 176, 479, 718
BslFI	GGGAC	2 cut(s)	461, 700
BslI	CCNNNNNNNGG	3 cut(s)	143, 320, 782
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	461, 700
BsnI	GGCC	3 cut(s)	157, 458, 746
Bsp13I	TCCGGA	1 cut(s)	175
BspACI	CCGC	5 cut(s)	168, 210, 459, 729, 732
BspANI	GGCC	3 cut(s)	157, 458, 746
BspCNI	CTCAG	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	101, 560
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	256
BssNAI	GTATAC	1 cut(s)	551
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	296, 685
Bst6I	CTCTTC	1 cut(s)	783
BstACI	GRCGYC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	711
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	23, 457
BstFNI	CGCG	2 cut(s)	101, 560
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	568, 698
BstMAI	GTCTC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 704, 737
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	8, 477, 716
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	2 cut(s)	101, 560
BstV1I	GCAGC	3 cut(s)	413, 539, 773
BstV2I	GAAGAC	1 cut(s)	360
BstZ17I	GTATAC	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	157, 458, 746
BtsCI	GGATG	2 cut(s)	23, 457
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	1 cut(s)	475
CfoI	GCGC	2 cut(s)	568, 698
Csp6I	GTAC	2 cut(s)	82, 396
CviAII	CATG	1 cut(s)	192
CviQI	GTAC	2 cut(s)	82, 396
DdeI	CTNAG	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
EciI	GGCGGA	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	203, 266, 435
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	195
FaqI	GGGAC	2 cut(s)	461, 700
FatI	CATG	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	169, 427, 459, 528, 732, 762
FokI	GGATG	2 cut(s)	10, 464
Fsp4HI	GCNGC	6 cut(s)	169, 427, 459, 528, 732, 762
FspBI	CTAG	1 cut(s)	402
FspI	TGCGCA	1 cut(s)	697
GlaI	GCGC	2 cut(s)	567, 697
GluI	GCNGC	6 cut(s)	169, 427, 459, 528, 732, 762
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	157, 458, 746
HapII	CCGG	4 cut(s)	158, 176, 479, 718
HhaI	GCGC	2 cut(s)	568, 698
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	195
Hin6I	GCGC	2 cut(s)	566, 696
HinP1I	GCGC	2 cut(s)	566, 696
HindIII	AAGCTT	2 cut(s)	70, 705
HinfI	GANTC	4 cut(s)	77, 482, 540, 713
HpaII	CCGG	4 cut(s)	158, 176, 479, 718
HphI	GGTGA	3 cut(s)	272, 610, 641
Hpy166II	GTNNAC	2 cut(s)	84, 551
Hpy188I	TCNGA	5 cut(s)	373, 489, 516, 539, 712
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	84, 551
Hpy99I	CGWCG	2 cut(s)	437, 565
HpyAV	CCTTC	4 cut(s)	46, 147, 581, 837
HpyCH4III	ACNGT	2 cut(s)	296, 685
HpyCH4IV	ACGT	2 cut(s)	357, 375
HpyCH4V	TGCA	3 cut(s)	470, 495, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 704, 737
HpyF3I	CTNAG	1 cut(s)	711
HpySE526I	ACGT	2 cut(s)	357, 375
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	195
HspAI	GCGC	2 cut(s)	566, 696
Kpn2I	TCCGGA	1 cut(s)	175
LpnPI	CCDG	9 cut(s)	22, 171, 189, 278, 480, 492, 731, 771, 789
Lsp1109I	GCAGC	3 cut(s)	413, 539, 773
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	357, 375
MaeIII	GTNAC	6 cut(s)	95, 205, 260, 296, 376, 839
MboII	GAAGA	6 cut(s)	10, 31, 259, 360, 428, 800
MluCI	AATT	5 cut(s)	4, 106, 276, 337, 670
MluI	ACGCGT	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	9 cut(s)	76, 442, 576, 589, 736, 784, 790, 807, 844
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	2 cut(s)	105, 252
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	4 cut(s)	158, 176, 479, 718
MspR9I	CCNGG	3 cut(s)	10, 479, 718
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	2 cut(s)	101, 560
MwoI	GCNNNNNNNGC	3 cut(s)	467, 704, 737
NciI	CCSGG	2 cut(s)	479, 718
NdeI	CATATG	1 cut(s)	445
NlaIII	CATG	1 cut(s)	195
NmuCI	GTSAC	4 cut(s)	260, 296, 376, 839
NsbI	TGCGCA	1 cut(s)	697
NspI	RCATGY	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	77, 482, 540
PfoI	TCCNGGA	2 cut(s)	477, 716
PkrI	GCNGC	6 cut(s)	170, 428, 460, 529, 733, 763
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	426
RsaI	GTAC	2 cut(s)	83, 397
RsaNI	GTAC	2 cut(s)	82, 396
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	105, 252
SatI	GCNGC	6 cut(s)	169, 427, 459, 528, 732, 762
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	3 cut(s)	10, 479, 718
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	67, 835
SmoI	CTYRAG	2 cut(s)	67, 835
Sse9I	AATT	5 cut(s)	4, 106, 276, 337, 670
SsiI	CCGC	5 cut(s)	168, 210, 459, 729, 732
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	3 cut(s)	8, 477, 716
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	296, 685
TaiI	ACGT	2 cut(s)	360, 378
TaqI	TCGA	2 cut(s)	75, 197
TasI	AATT	5 cut(s)	4, 106, 276, 337, 670
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	3 cut(s)	171, 461, 734
TfiI	GAWTC	3 cut(s)	77, 482, 540
Tru1I	TTAA	2 cut(s)	105, 252
Tru9I	TTAA	2 cut(s)	105, 252
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	4 cut(s)	260, 296, 376, 839
TseI	GCWGC	3 cut(s)	426, 527, 761
Tsp45I	GTSAC	4 cut(s)	260, 296, 376, 839
TspDTI	ATGAA	4 cut(s)	17, 37, 453, 693
TspRI	CASTG	1 cut(s)	771
XapI	RAATTY	2 cut(s)	4, 670
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	1 cut(s)	402
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.