Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004888

Physical Location & Seq

Genomic Coordinates Reverse (-)

9646535 .. 9647881

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATAACACCCCCCTACTCCACCACCTCGTCCTTCTTCTTCTGCTACCATGCACCCTAGTATACACCATCACCACCGTCACTTCATCCTCCGCCAACCAGGCTTACCCCACCCTCACCGAGGACTGCTCAGTGTCCGGTGAGGATATCCCTGTGCCCATACGGAGGGAGGTTTATGATTACGGTCGAATATTTGACATCAGCCACAGGTACACCCCTGACATGCCCAGTTATGGCGTCAAGGACGGGCTTGGGGAATTCCTGTCGCTTGGCATGAGCATCAAAAATGGCTCGGACGCCAACGTTTCCGTGATGAAGTTCAGTGTCCACTCCGGCACCCATGTGGACGCGCCGGGTCATGTCTTCGACCATTACTACGATGCTGGCTTTGATGTTGATGCGCTTGACCTCGAATTCTTAAATGGTCCTACACTGGTGGTTGATGTTCCGAGGAATAAGAACATAACTGCTGAAGTCATGGAGGCTTTAAATATTCCTAAAGGGGTGCGTCGTGTGCTTTTCAGAACCCTAAATACCGACAGGAAGCTTATGTGGAAGAAAGAGTTTGATACAAGCGCTGTAGGGTTTATGGAGGATGGGGCAAAATGGCTGAAAAGTTCATTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

209

Amino Acids

23.27

Weight (kDa)

5.43

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclase	PF04199	65 - 206	1.4e-15	Putative cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66880 AT1G66880 AT1G66880 AT5G38210 AT5G38210 AT5G38210
fragaria_vesca	FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540 FvH4_2g12540
malus_domestica	MD00G1204100.v1.1 MD09G1255300.v1.1 MD17G1247800.v1.1 MD17G1248000.v1.1
prunus_persica	Prupe.3G146500_v2.0.a1 Prupe.3G146700_v2.0.a1
pyrus_communis	pycom09g17110 pycom17g24910 pycom17g25040
rosa_chinensis	RchiOBHm_Chr6g0273041
rosa_laevigata	RLG00000013645
rosa_multiflora	Rmu_ssc0000387.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195700
rosa_rugosa	Rorug06G0072500
rosa_samantha	Rh6AG188100 Rh6BG191500 Rh6CG190600 Rh6DG182000
rosa_wichuraiana	Rw6G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	350
AciI	CCGC	1 cut(s)	93
AclI	AACGTT	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	257, 413
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	2 cut(s)	237, 297
AfaI	GTAC	1 cut(s)	212
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	121, 165, 233
AjnI	CCWGG	1 cut(s)	99
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
Aor51HI	AGCGCT	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	257, 413
AspLEI	GCGC	3 cut(s)	352, 403, 578
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	3 cut(s)	64, 109, 152
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	355
BccI	CCATC	2 cut(s)	77, 590
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	2 cut(s)	59, 628
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	579
BglI	GCCNNNNNGGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	101, 354
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	101, 354
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	288, 370, 388
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	2 cut(s)	237, 297
BsaJI	CCNNGG	2 cut(s)	120, 449
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 165, 233
Bse1I	ACTGG	2 cut(s)	228, 438
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	120, 449
BseGI	GGATG	2 cut(s)	86, 601
BseLI	CCNNNNNNNGG	3 cut(s)	121, 165, 233
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	228, 438
BseSI	GKGCMC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	3 cut(s)	138, 333, 353
BslI	CCNNNNNNNGG	3 cut(s)	121, 165, 233
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	228, 438
BssECI	CCNNGG	2 cut(s)	120, 449
BssMI	GATC	1 cut(s)	624
BssNAI	GTATAC	1 cut(s)	64
BssNI	GRCGYC	2 cut(s)	237, 297
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	79, 185
BstACI	GRCGYC	2 cut(s)	237, 297
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	86, 601
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	3 cut(s)	352, 403, 578
BstKTI	GATC	1 cut(s)	627
BstMBI	GATC	1 cut(s)	624
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 514
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	99, 352
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	355
BstZ17I	GTATAC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	86, 601
BtsIMutI	CAGTG	3 cut(s)	138, 328, 431
Cac8I	GCNNGC	1 cut(s)	385
CfoI	GCGC	3 cut(s)	352, 403, 578
Cfr13I	GGNCC	1 cut(s)	425
CseI	GACGC	4 cut(s)	226, 305, 356, 497
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	6 cut(s)	51, 223, 274, 341, 359, 478
CviJI	RGCY	8 cut(s)	104, 204, 250, 291, 387, 485, 547, 610
CviKI_1	RGCY	8 cut(s)	104, 204, 250, 291, 387, 485, 547, 610
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
DraI	TTTAAA	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	425
Eco47III	AGCGCT	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRI	GAATTC	2 cut(s)	257, 413
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	148
FaeI	CATG	6 cut(s)	54, 226, 277, 344, 362, 481
FatI	CATG	6 cut(s)	50, 222, 273, 340, 358, 477
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	2 cut(s)	73, 608
FspBI	CTAG	2 cut(s)	59, 628
GlaI	GCGC	3 cut(s)	351, 402, 577
HaeII	RGCGCY	1 cut(s)	579
HapII	CCGG	3 cut(s)	138, 333, 353
HgaI	GACGC	4 cut(s)	226, 305, 356, 497
HhaI	GCGC	3 cut(s)	352, 403, 578
Hin1I	GRCGYC	2 cut(s)	237, 297
Hin1II	CATG	6 cut(s)	54, 226, 277, 344, 362, 481
Hin6I	GCGC	3 cut(s)	350, 401, 576
HinP1I	GCGC	3 cut(s)	350, 401, 576
HindIII	AAGCTT	1 cut(s)	545
HpaII	CCGG	3 cut(s)	138, 333, 353
HphI	GGTGA	3 cut(s)	64, 109, 152
Hpy166II	GTNNAC	4 cut(s)	64, 213, 328, 346
Hpy188I	TCNGA	3 cut(s)	295, 450, 524
Hpy8I	GTNNAC	4 cut(s)	64, 213, 328, 346
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	79, 185
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 514
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	237, 297
Hsp92II	CATG	6 cut(s)	54, 226, 277, 344, 362, 481
HspAI	GCGC	3 cut(s)	350, 401, 576
Kzo9I	GATC	1 cut(s)	624
LweI	GCATC	3 cut(s)	288, 370, 388
MaeI	CTAG	2 cut(s)	59, 628
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	4 cut(s)	29, 32, 355, 568
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	257, 413
MseI	TTAA	2 cut(s)	419, 488
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	3 cut(s)	138, 333, 353
MspR9I	CCNGG	2 cut(s)	101, 354
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	101, 514
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	6 cut(s)	54, 226, 277, 344, 362, 481
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	341
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	425
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	419, 488
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	101, 354
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	30, 174, 212, 306, 411, 549
SfaNI	GCATC	3 cut(s)	288, 370, 388
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	257, 413
SsiI	CCGC	1 cut(s)	93
SspI	AATATT	2 cut(s)	192, 493
SspMI	CTAG	2 cut(s)	59, 628
StyD4I	CCNGG	2 cut(s)	99, 352
TaaI	ACNGT	2 cut(s)	79, 185
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	187, 366, 411
TasI	AATT	2 cut(s)	257, 413
Tru1I	TTAA	2 cut(s)	419, 488
Tru9I	TTAA	2 cut(s)	419, 488
TscAI	CASTG	3 cut(s)	138, 328, 438
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	4 cut(s)	17, 75, 329, 609
TspGWI	ACGGA	2 cut(s)	178, 298
TspRI	CASTG	3 cut(s)	138, 328, 438
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	2 cut(s)	257, 413
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	59, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.