MD09G1267600.v1.1

Embryonic protein DC-8-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
34178922 .. 34180838
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1267600.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGGCGTCGTCGAAGCAAATGAAGGAGGAGACAGCTGCCAAGGCAGCAGCGAGGCTCGCTGCCGATGAACCGGCGGAAGAGACTGTCGTGGTGGAGACTACTTATGTGACTGATGACCAGGGGAGGCCAATAGAGTTTGCACAGCGCGAGGAGAAGCCCGGTGTTTTCGGGTCGATGATGAAGGCAGTGACGGGGACTTTAGAGCATGCCAAGGAAGCTGTGGTGGGGAAACCCCACGAAGAAAGTCAGGTTCAAGAGAAGGGCAAGGAGTATAAAGACTACACCACCCAGAAGGCGAAGGAGACCACTGATGCAGCCGGGGAGAAGATAAACGAGTATACTGAAACCGCTGAGGAGAAAGCGAAGCAGACCGCGGAGAAGGCAAATGAGACGAAGGAAGCGGCTAAGGGGAAGGTGGGTGAGTATGCGGATTACACAGCTGAAAAGGCGAAGGAAACTAAGGACACCGCTGCTCAGAAGGCGAACGAGGCTGCTCAAAAAGCGAAGGAGACAAAGGACAGCGCGGCTCAGAAGGCAAAGGAGGCGAAGGATGCAACAATGGGGAAAGCAGGCGAGTATACAAACTATGCAGCTGAGAAGGCAAAGGAGGCGAAGGACACAACTGTGAACAAAGCTGGCGAGTACACCAACTACACCGCCGAGAAGGCGAAGGAGGCCAAGGACACAACATTGAACAAGGCGAAGGAGGCGAAGGACACAACGATGAACAAAGCCGGCGAGTACACCAACTACGCCGCCGAGAAGGCGAAGCAGGCCAAGGACACTACGGTCAACAAAGCTGGTGAATATACCAACTATGCGGCTGAGAAGGCCAAGGAGGCTAAGGATGAGACGGTCAAGACAGCAAAGGAAACCAAGGACTGCACGGCTGAGAAGGCTAAAGAAGGGAAGGATACTACCGTGAGCAAGTTGGGTCAGCTAAAGGATACCGCTGCCGGTGCCGCTCAAAAGGCCATGGACTACTTGTCCGGCAAGAAGGAGGAGACCAAACAGAAGGCTGCCGAGACTGCCGAGAAAACAAAAGACACGACTTATGAGACTGCAGAGAAAGCGAAGGAGAAACTGAGTGAGACTGAGGAGGAAGCGAGGAGAAAGATGGAGCAGTTGAAGTTGCAAGGAAAAGAGTACAAAGATGAAGATGCTGACAGGGCACGTGAGGCACGTGACATCGAGGCCGAGAAAGGGCAGGCAGCGAAGGAAAACATATTCAGCTCGATTGGGAGCATTCCTGGTGCCATCAAAAGCAAGTTGACTCATCCTACGGATGTGGTGGAGGAGTCACGTGCCGCACGTGAGAGAGGGAGTACGGGGAGAAGGACCGTTCCTGTTGTGGAGGGGGTGGAGGTTGATGTGGCGGAGACGAGGCCTGGTGCCGTTGCAAGCAAGTTGTACGAGTCGGACCAGATGCATGGTCAAAACTTCAACGACGTGGGTCGTTTGGACGAGGATTGTAAAACGCAAGCGGAGATCCGCATTGATAACGAGGGCAAACGCGTGGAGCGCCTCCACAAAATGTGA

Protein Analysis

513

Amino Acids

56.09

Weight (kDa)

5.62

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_4 PF02987 124 - 164 4.1e-11 Late embryogenesis abundant protein
LEA_4 PF02987 164 - 193 6.9e-09 Late embryogenesis abundant protein
LEA_4 PF02987 194 - 237 3.7e-17 Late embryogenesis abundant protein
LEA_4 PF02987 231 - 270 8.4e-17 Late embryogenesis abundant protein
LEA_4 PF02987 271 - 313 1.9e-15 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
AccB1I GGYRCC 3 cut(s) 959, 1253, 1391
AccBSI CCGCTC 1 cut(s) 965
AccI GTMKAC 2 cut(s) 338, 578
AccII CGCG 4 cut(s) 147, 374, 524, 1515
AclWI GGATC 1 cut(s) 1483
AcvI CACGTG 4 cut(s) 1175, 1184, 1304, 1313
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 644, 743, 1148, 1327, 1412
AfiI CCNNNNNNNGG 1 cut(s) 1203
AflIII ACRYGT 1 cut(s) 1513
AgsI TTSAA 4 cut(s) 254, 694, 1129, 1444
AhdI GACNNNNNGTC 1 cut(s) 985
AjiI CACGTC 1 cut(s) 1450
AjnI CCWGG 3 cut(s) 117, 1249, 1387
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 8 cut(s) 35, 218, 440, 593, 635, 800, 940, 1233
AluI AGCT 8 cut(s) 35, 218, 440, 593, 635, 800, 940, 1233
AlwI GGATC 1 cut(s) 1483
AoxI GGCC 7 cut(s) 125, 675, 774, 831, 972, 1194, 1385
AspLEI GCGC 3 cut(s) 147, 524, 1524
AspS9I GGNCC 2 cut(s) 1338, 1420
AsuC2I CCSGG 2 cut(s) 159, 319
AsuHPI GGTGA 2 cut(s) 431, 815
AvaII GGWCC 2 cut(s) 1338, 1420
BaeGI GKGCMC 1 cut(s) 1174
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BanI GGYRCC 3 cut(s) 959, 1253, 1391
BbrPI CACGTG 4 cut(s) 1175, 1184, 1304, 1313
BbvCI CCTCAGC 1 cut(s) 351
BccI CCATC 2 cut(s) 1111, 1265
BceAI ACGGC 2 cut(s) 903, 1379
BciT130I CCWGG 3 cut(s) 119, 1251, 1389
BciVI GTATCC 2 cut(s) 907, 940
BcnI CCSGG 2 cut(s) 159, 319
BfmI CTRYAG 1 cut(s) 1062
BfoI RGCGCY 1 cut(s) 1525
BfuI GTATCC 2 cut(s) 907, 940
BglI GCCNNNNNGGC 3 cut(s) 665, 764, 839
Bme1390I CCNGG 5 cut(s) 119, 159, 319, 1251, 1389
Bme18I GGWCC 2 cut(s) 1338, 1420
BmeRI GACNNNNNGTC 1 cut(s) 985
BmgBI CACGTC 1 cut(s) 1450
BmgT120I GGNCC 2 cut(s) 1338, 1420
BmiI GGNNCC 3 cut(s) 961, 1255, 1393
BmrFI CCNGG 5 cut(s) 119, 159, 319, 1251, 1389
BmsI GCATC 4 cut(s) 301, 541, 1150, 1416
BoxI GACNNNNGTC 1 cut(s) 1452
Bpu10I CCTNAGC 3 cut(s) 351, 405, 843
BpuMI CCSGG 2 cut(s) 159, 319
BsaAI YACGTR 4 cut(s) 1175, 1184, 1304, 1313
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 296, 998
Bsc4I CCNNNNNNNGG 1 cut(s) 1203
Bse118I RCCGGY 3 cut(s) 70, 734, 956
BseBI CCWGG 3 cut(s) 119, 1251, 1389
BseGI GGATG 4 cut(s) 556, 853, 1276, 1291
BseLI CCNNNNNNNGG 1 cut(s) 1203
BseMII CTCAG 8 cut(s) 342, 488, 542, 585, 816, 882, 1076, 1086
BseRI GAGGAG 7 cut(s) 41, 164, 368, 1016, 1112, 1123, 1310
BseSI GKGCMC 1 cut(s) 1174
BsgI GTGCAG 1 cut(s) 868
Bsh1236I CGCG 4 cut(s) 147, 374, 524, 1515
BshFI GGCC 7 cut(s) 127, 677, 776, 833, 974, 1196, 1387
BshNI GGYRCC 3 cut(s) 959, 1253, 1391
BsiSI CCGG 6 cut(s) 71, 159, 318, 735, 957, 990
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 1203
BsmBI CGTCTC 3 cut(s) 383, 845, 1373
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 7 cut(s) 127, 677, 776, 833, 974, 1196, 1387
Bso31I GGTCTC 2 cut(s) 296, 998
Bsp1286I GDGCHC 1 cut(s) 1174
Bsp143I GATC 1 cut(s) 1488
Bsp19I CCATGG 1 cut(s) 975
BspANI GGCC 7 cut(s) 127, 677, 776, 833, 974, 1196, 1387
BspCNI CTCAG 8 cut(s) 343, 487, 541, 586, 817, 883, 1077, 1087
BspFNI CGCG 4 cut(s) 147, 374, 524, 1515
BspLI GGNNCC 3 cut(s) 961, 1255, 1393
BspMAI CTGCAG 1 cut(s) 1066
BspPI GGATC 1 cut(s) 1483
BspT107I GGYRCC 3 cut(s) 959, 1253, 1391
BspTNI GGTCTC 2 cut(s) 296, 998
BsrBI CCGCTC 1 cut(s) 965
BsrFI RCCGGY 3 cut(s) 70, 734, 956
BssAI RCCGGY 3 cut(s) 70, 734, 956
BssMI GATC 1 cut(s) 1488
BssNAI GTATAC 2 cut(s) 339, 579
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 7 cut(s) 39, 210, 678, 777, 834, 876, 975
Bst1107I GTATAC 2 cut(s) 339, 579
Bst2UI CCWGG 3 cut(s) 119, 1251, 1389
Bst4CI ACNGT 6 cut(s) 85, 625, 790, 856, 922, 1342
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 4 cut(s) 1175, 1184, 1304, 1313
BstC8I GCNNGC 9 cut(s) 57, 207, 571, 637, 736, 774, 1209, 1402, 1482
BstDSI CCRYGG 2 cut(s) 372, 975
BstF5I GGATG 4 cut(s) 556, 853, 1276, 1291
BstFNI CGCG 4 cut(s) 147, 374, 524, 1515
BstH2I RGCGCY 1 cut(s) 1525
BstHHI GCGC 3 cut(s) 147, 524, 1524
BstKTI GATC 1 cut(s) 1491
BstMBI GATC 1 cut(s) 1488
BstNI CCWGG 3 cut(s) 119, 1251, 1389
BstNSI RCATGY 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 1452
BstSCI CCNGG 5 cut(s) 117, 157, 317, 1249, 1387
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 1174
BstUI CGCG 4 cut(s) 147, 374, 524, 1515
BstX2I RGATCY 1 cut(s) 1488
BstXI CCANNNNNNTGG 1 cut(s) 1430
BstYI RGATCY 1 cut(s) 1488
BstZ17I GTATAC 2 cut(s) 339, 579
BsuI GTATCC 2 cut(s) 907, 940
BsuRI GGCC 7 cut(s) 127, 677, 776, 833, 974, 1196, 1387
BtgI CCRYGG 2 cut(s) 372, 975
BtrI CACGTC 1 cut(s) 1450
BtsCI GGATG 4 cut(s) 556, 853, 1276, 1291
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 306
Cac8I GCNNGC 9 cut(s) 57, 207, 571, 637, 736, 774, 1209, 1402, 1482
CfoI GCGC 3 cut(s) 147, 524, 1524
Cfr10I RCCGGY 3 cut(s) 70, 734, 956
Cfr13I GGNCC 2 cut(s) 1338, 1420
Cfr42I CCGCGG 1 cut(s) 375
Csp6I GTAC 5 cut(s) 643, 742, 1147, 1326, 1411
CviAII CATG 3 cut(s) 206, 976, 1430
CviQI GTAC 5 cut(s) 643, 742, 1147, 1326, 1411
DpnI GATC 1 cut(s) 1490
DpnII GATC 1 cut(s) 1488
DrdI GACNNNNNNGTC 1 cut(s) 788
DriI GACNNNNNGTC 1 cut(s) 985
DseDI GACNNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 2 cut(s) 89, 1391
Eco130I CCWWGG 7 cut(s) 39, 210, 678, 777, 834, 876, 975
Eco147I AGGCCT 1 cut(s) 1387
Eco31I GGTCTC 2 cut(s) 296, 998
Eco47I GGWCC 2 cut(s) 1338, 1420
Eco72I CACGTG 4 cut(s) 1175, 1184, 1304, 1313
EcoRII CCWGG 3 cut(s) 117, 1249, 1387
EcoT14I CCWWGG 7 cut(s) 39, 210, 678, 777, 834, 876, 975
EcoT22I ATGCAT 1 cut(s) 1431
ErhI CCWWGG 7 cut(s) 39, 210, 678, 777, 834, 876, 975
Esp3I CGTCTC 3 cut(s) 383, 845, 1373
FaeI CATG 3 cut(s) 209, 979, 1433
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 205, 975, 1429
FblI GTMKAC 2 cut(s) 338, 578
FokI GGATG 4 cut(s) 563, 860, 1263, 1298
GlaI GCGC 3 cut(s) 146, 523, 1523
HaeII RGCGCY 1 cut(s) 1525
HaeIII GGCC 7 cut(s) 127, 677, 776, 833, 974, 1196, 1387
HapII CCGG 6 cut(s) 71, 159, 318, 735, 957, 990
HhaI GCGC 3 cut(s) 147, 524, 1524
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 209, 979, 1433
Hin6I GCGC 3 cut(s) 145, 522, 1522
HinP1I GCGC 3 cut(s) 145, 522, 1522
HincII GTYRAC 2 cut(s) 793, 1272
HindII GTYRAC 2 cut(s) 793, 1272
HinfI GANTC 3 cut(s) 1273, 1298, 1415
HpaII CCGG 6 cut(s) 71, 159, 318, 735, 957, 990
HphI GGTGA 2 cut(s) 431, 815
Hpy166II GTNNAC 7 cut(s) 339, 579, 628, 645, 744, 793, 1272
Hpy188I TCNGA 3 cut(s) 477, 531, 1420
Hpy188III TCNNGA 2 cut(s) 254, 859
Hpy8I GTNNAC 7 cut(s) 339, 579, 628, 645, 744, 793, 1272
Hpy99I CGWCG 3 cut(s) 10, 13, 1451
HpyCH4III ACNGT 6 cut(s) 85, 625, 790, 856, 922, 1342
HpyCH4IV ACGT 5 cut(s) 1174, 1183, 1303, 1312, 1449
HpyCH4V TGCA 9 cut(s) 140, 314, 554, 590, 885, 1064, 1135, 1400, 1429
HpySE526I ACGT 5 cut(s) 1174, 1183, 1303, 1312, 1449
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 209, 979, 1433
HspAI GCGC 3 cut(s) 145, 522, 1522
KroI GCCGGC 1 cut(s) 734
KroNI GCCGGC 1 cut(s) 736
KspI CCGCGG 1 cut(s) 375
Kzo9I GATC 1 cut(s) 1488
LmnI GCTCC 3 cut(s) 1120, 1242, 1519
LweI GCATC 4 cut(s) 301, 541, 1150, 1416
MaeII ACGT 5 cut(s) 1174, 1183, 1303, 1312, 1449
MaeIII GTNAC 4 cut(s) 106, 187, 1184, 1299
MalI GATC 1 cut(s) 1490
MbiI CCGCTC 1 cut(s) 965
MboI GATC 1 cut(s) 1488
MboII GAAGA 4 cut(s) 89, 251, 337, 1169
MflI RGATCY 1 cut(s) 1488
MhlI GDGCHC 1 cut(s) 1174
MluI ACGCGT 1 cut(s) 1513
MlyI GAGTC 3 cut(s) 1267, 1307, 1424
MmeI TCCRAC 1 cut(s) 1398
Mph1103I ATGCAT 1 cut(s) 1431
MroNI GCCGGC 1 cut(s) 734
MslI CAYNNNNRTG 2 cut(s) 623, 722
MspA1I CMGCKG 7 cut(s) 35, 350, 374, 440, 470, 593, 953
MspI CCGG 6 cut(s) 71, 159, 318, 735, 957, 990
MspR9I CCNGG 5 cut(s) 119, 159, 319, 1251, 1389
Mva1269I GAATGC 1 cut(s) 1245
MvaI CCWGG 3 cut(s) 119, 1251, 1389
MvnI CGCG 4 cut(s) 147, 374, 524, 1515
NaeI GCCGGC 1 cut(s) 736
NciI CCSGG 2 cut(s) 159, 319
NcoI CCATGG 1 cut(s) 975
NdeII GATC 1 cut(s) 1488
NgoMIV GCCGGC 1 cut(s) 734
NlaIII CATG 3 cut(s) 209, 979, 1433
NlaIV GGNNCC 3 cut(s) 961, 1255, 1393
NmeAIII GCCGAG 5 cut(s) 685, 784, 1048, 1057, 1222
NmuCI GTSAC 4 cut(s) 106, 187, 1184, 1299
NsiI ATGCAT 1 cut(s) 1431
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 623
PaeI GCATGC 1 cut(s) 209
PceI AGGCCT 1 cut(s) 1387
PcsI WCGNNNNNNNCGW 2 cut(s) 1180, 1309
PctI GAATGC 1 cut(s) 1245
PdiI GCCGGC 1 cut(s) 736
PleI GAGTC 3 cut(s) 1267, 1306, 1423
PmaCI CACGTG 4 cut(s) 1175, 1184, 1304, 1313
PmlI CACGTG 4 cut(s) 1175, 1184, 1304, 1313
PpsI GAGTC 3 cut(s) 1267, 1306, 1423
Ppu21I YACGTR 4 cut(s) 1175, 1184, 1304, 1313
PshAI GACNNNNGTC 1 cut(s) 1452
Psp6I CCWGG 3 cut(s) 117, 1249, 1387
PspCI CACGTG 4 cut(s) 1175, 1184, 1304, 1313
PspGI CCWGG 3 cut(s) 117, 1249, 1387
PspN4I GGNNCC 3 cut(s) 961, 1255, 1393
PspPI GGNCC 2 cut(s) 1338, 1420
PstI CTGCAG 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 1488
PvuII CAGCTG 3 cut(s) 35, 440, 593
RsaI GTAC 5 cut(s) 644, 743, 1148, 1327, 1412
RsaNI GTAC 5 cut(s) 643, 742, 1147, 1326, 1411
RseI CAYNNNNRTG 2 cut(s) 623, 722
SacII CCGCGG 1 cut(s) 375
Sau3AI GATC 1 cut(s) 1488
Sau96I GGNCC 2 cut(s) 1338, 1420
SchI GAGTC 3 cut(s) 1267, 1307, 1424
ScrFI CCNGG 5 cut(s) 119, 159, 319, 1251, 1389
SduI GDGCHC 1 cut(s) 1174
SfaNI GCATC 4 cut(s) 301, 541, 1150, 1416
SfcI CTRYAG 1 cut(s) 1062
Sfr303I CCGCGG 1 cut(s) 375
SgrBI CCGCGG 1 cut(s) 375
SinI GGWCC 2 cut(s) 1338, 1420
SmiMI CAYNNNNRTG 2 cut(s) 623, 722
SphI GCATGC 1 cut(s) 209
SseBI AGGCCT 1 cut(s) 1387
StuI AGGCCT 1 cut(s) 1387
StyD4I CCNGG 5 cut(s) 117, 157, 317, 1249, 1387
StyI CCWWGG 7 cut(s) 39, 210, 678, 777, 834, 876, 975
TaaI ACNGT 6 cut(s) 85, 625, 790, 856, 922, 1342
TaiI ACGT 5 cut(s) 1177, 1186, 1306, 1315, 1452
TaqI TCGA 4 cut(s) 11, 173, 1191, 1235
TatI WGTACW 3 cut(s) 642, 741, 1146
TauI GCSGC 6 cut(s) 404, 527, 758, 824, 965, 1310
TscAI CASTG 2 cut(s) 192, 313
TseFI GTSAC 4 cut(s) 106, 187, 1184, 1299
Tsp45I GTSAC 4 cut(s) 106, 187, 1184, 1299
TspDTI ATGAA 5 cut(s) 35, 81, 194, 740, 1170
TspGWI ACGGA 1 cut(s) 1298
TspRI CASTG 2 cut(s) 192, 313
VpaK11BI GGWCC 2 cut(s) 1338, 1420
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 2 cut(s) 338, 578
Zsp2I ATGCAT 1 cut(s) 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.