Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012043

Physical Location & Seq

Genomic Coordinates Reverse (-)

15985579 .. 15987335

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG179500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGCGTCGTCGAAGCAGTTCAAGGAGGAGAGAGCTGAGGCAGAAGCGAGGAAAGCCGCGCTTGATCTGAAAGATGGGAATAGAGAAAGAGAGTACGAAACAGCTGGGGTGAAGATGGACAGGGACATGTACGGCCAGCCAAGAGAGCCATCCCATGTGCAACAAGAAGCGAAGCCTGGCGTTATTGGGTCTGTTTTTAGGGCTGTGACCGGCACATTGGAGCATGCAAAGGACGCTGTTGTGGGCAAAAGCCATGACACTTCTGATGCAGCAAGAGAGCGTTCGGAATACACCACACTTAAGGCGAAGGAAACGACTGATGCGGCTGGAGAGAAGCTGGAGGAGTATAAGGTGGCCGCGGCTCGGCCGGCGAAGGAGGCTGGGGAGAAGACGAAGGAGGTGAAGGACACTGCTGCGGAGAAGGCCAAAGAGACCAAGGAGTCTGCCAAGGGGAAGGGGAGTGAGTATGCGGATTACACTTCGCAGAAGGCGAAGGAGGCCAAGGATGCTACGGCGGAGAAGGCTAAGCAGACGAAAGACTATGTTGCCGAGACCGCAAGTGAGGCTACGGAGAAGGCGAAAGAGACAAAGGATGCTGCGATGAGGAAGGCTGAGGAGTACACGGATTACACTGCTCAGAAGGCCAAGGAGGCCAAGGATACCACAGTAGGGAAGGCTAAAGAGTACACCAATTATGGGGCCGAGAAGGCAGAGGAGGCCAAAGACACTACAGTGGGGAAGGCCGGTGAGTACACGAACTATGCTGCCGAGAAGGCAAAGGGGGCCAAGGACACTACGGTGGGGAAGGCGGAGGAGTACAAGAATTACACGGCAGAAAAGGCAGAGGAGACTGCGGAGGCAACCAAAGAAAAGGCAAAAGAGATTGCGGAGGCAGCCAAAGACAAGACTAAAGAGACAGCGGAGTGTACAGCTGAGAAAGCAAAAGAAGGGAAGGACACTACTGTGAGCAAGTTGGGTGGGCTCATGAATTACTTGACTGGTAAGAAAGAAGAAACCAAACAGAAGGCTGCAGAGACGGCTGAGTCTATCAAAGAGAACACTAAACAGGTGGCTGAGGCGGCGAGGGAGAAGACTGAAGAGACTGCCGAGGCAACCAAACAGAAGACCAAAGAGGCAACTGAAAAAACCAAGGAGACGTTGGGTGAGACCAAGGAGGAAGCTAGGAGAAAGATGGAGGAGCTGAGGCTAAGGGAGAAAGGTTATGAAGCGAGAGCAGGAGACATGGACCGTGATGACGACAGCGAGATTGAGGCAGCTAAGGGTACTGCAGCTAAGGGCACTGCAACAAAGAGCAACATTTTTAGCTCACTTGGGAGTGTGAGTGATGCCATCAAGAGCAAGCTGACTCATCCAACCAATGTGGTGGAGGAGTCACGTGCTGCACGTGAGGAGGGGAGTACGGGGAGGACCAAGACTCCTGCCATGGTAGAGGTACCTGTGGAGAAGGTGGAGATTGGCATCAGGGACACGCGCCCGGGGGCTGTGGCCGCGGCACTTAAGAAGTCTGACCAGATGTTTGGTCAAACTTTCAACGATCCTGGTAGTATGGGAGATGAGGGCAAGGTGGTTATGGAGCGGCGCGTGGTAGACGAAGCCGGAAATGTGCGTGTGGACCGCAGTGGCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

550

Amino Acids

59.86

Weight (kDa)

5.84

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_4	PF02987	157 - 189	8.8e-08	Late embryogenesis abundant protein
LEA_4	PF02987	189 - 229	2.5e-14	Late embryogenesis abundant protein
LEA_4	PF02987	230 - 273	4.9e-16	Late embryogenesis abundant protein
LEA_4	PF02987	252 - 294	6.4e-11	Late embryogenesis abundant protein
LEA_4	PF02987	287 - 326	1.4e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36640 AT2G36640 AT3G53040
fragaria_vesca	FvH4_6g17400
malus_domestica	MD09G1267600.v1.1
prunus_persica	Prupe.7G121500_v2.0.a1 Prupe.7G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471651
rosa_laevigata	RLG00000024148
rosa_multiflora	Rmu_co8483845.1_g000001 Rmu_sc0005631.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409690
rosa_rugosa	Rorug03G0118600
rosa_samantha	Rh3AG169800 Rh3BG195500 Rh3CG186200 Rh3CG195500 Rh3DG179500
rosa_wichuraiana	Rw0G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	439, 1042
Acc65I	GGTACC	1 cut(s)	1453
AccB1I	GGYRCC	1 cut(s)	1453
AccBSI	CCGCTC	1 cut(s)	1597
AccI	GTMKAC	1 cut(s)	1608
AccII	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
AclWI	GGATC	1 cut(s)	1550
AcoI	YGGCCR	4 cut(s)	133, 354, 365, 1506
AcuI	CTGAAG	1 cut(s)	1116
AcvI	CACGTG	2 cut(s)	1397, 1406
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	363, 669, 696
AflII	CTTAAG	2 cut(s)	299, 1517
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	22, 1552
AjnI	CCWGG	2 cut(s)	175, 1558
AleI	CACNNNNGTG	3 cut(s)	731, 797, 962
AlwI	GGATC	1 cut(s)	1550
Ama87I	CYCGRG	1 cut(s)	1495
ApeKI	GCWGC	9 cut(s)	269, 413, 596, 764, 893, 1028, 1274, 1289, 1400
ArsI	GACNNNNNNTTYG	2 cut(s)	1520, 1552
Asp700I	GAANNNNTTC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	1453
AspLEI	GCGC	3 cut(s)	61, 1494, 1602
AspS9I	GGNCC	5 cut(s)	699, 783, 1246, 1428, 1633
AsuC2I	CCSGG	2 cut(s)	1496, 1497
AsuHPI	GGTGA	4 cut(s)	121, 412, 758, 1175
AvaI	CYCGRG	1 cut(s)	1495
AvaII	GGWCC	3 cut(s)	1246, 1428, 1633
BaeGI	GKGCMC	1 cut(s)	1301
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BanI	GGYRCC	1 cut(s)	1453
BanII	GRGCYC	1 cut(s)	984
BbrPI	CACGTG	2 cut(s)	1397, 1406
BbsI	GAAGAC	3 cut(s)	395, 1097, 1130
BbvCI	CCTCAGC	4 cut(s)	36, 612, 1074, 1202
BbvI	GCAGC	9 cut(s)	281, 400, 583, 751, 905, 1015, 1286, 1301, 1387
BccI	CCATC	5 cut(s)	68, 109, 157, 1186, 1358
BceAI	ACGGC	4 cut(s)	148, 528, 846, 1053
BciT130I	CCWGG	2 cut(s)	177, 1560
BciVI	GTATCC	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	1496, 1497
BfaI	CTAG	1 cut(s)	1182
BfmI	CTRYAG	3 cut(s)	729, 1029, 1287
BfrI	CTTAAG	2 cut(s)	299, 1517
BfuI	GTATCC	1 cut(s)	652
BglI	GCCNNNNNGGC	3 cut(s)	650, 707, 773
BlpI	GCTNAGC	1 cut(s)	525
Bme1390I	CCNGG	4 cut(s)	177, 1496, 1497, 1560
Bme18I	GGWCC	3 cut(s)	1246, 1428, 1633
BmeT110I	CYCGRG	1 cut(s)	1495
BmgT120I	GGNCC	5 cut(s)	699, 783, 1246, 1428, 1633
BmiI	GGNNCC	3 cut(s)	700, 784, 1455
BmrFI	CCNGG	4 cut(s)	177, 1496, 1497, 1560
BmsI	GCATC	6 cut(s)	256, 310, 496, 583, 1336, 1488
BpiI	GAAGAC	3 cut(s)	395, 1097, 1130
BpmI	CTGGAG	2 cut(s)	348, 359
Bpu10I	CCTNAGC	7 cut(s)	36, 612, 1074, 1202, 1208, 1278, 1293
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	1496, 1497
BsaAI	YACGTR	2 cut(s)	1397, 1406
BsaBI	GATNNNNATC	1 cut(s)	1478
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	3 cut(s)	425, 545, 1160
BsaXI	ACNNNNNCTCC	4 cut(s)	1327, 1357, 1420, 1450
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 669, 696
Bse118I	RCCGGY	3 cut(s)	209, 367, 743
Bse1I	ACTGG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	1478
BseBI	CCWGG	2 cut(s)	177, 1560
BseGI	GGATG	4 cut(s)	149, 511, 598, 1369
BseJI	GATNNNNATC	1 cut(s)	1478
BseLI	CCNNNNNNNGG	3 cut(s)	363, 669, 696
BseMII	CTCAG	7 cut(s)	27, 603, 650, 924, 1032, 1065, 1193
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	9 cut(s)	41, 356, 629, 728, 827, 860, 1211, 1403, 1424
BseSI	GKGCMC	1 cut(s)	1301
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	9 cut(s)	281, 400, 583, 751, 905, 1015, 1286, 1301, 1387
BseYI	CCCAGC	2 cut(s)	104, 380
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
Bsh1285I	CGRYCG	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	1453
BsiEI	CGRYCG	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	1495
BsiSI	CCGG	5 cut(s)	210, 368, 744, 1496, 1617
BslFI	GGGAC	2 cut(s)	137, 1499
BslI	CCNNNNNNNGG	3 cut(s)	363, 669, 696
BsmBI	CGTCTC	2 cut(s)	1028, 1148
BsmFI	GGGAC	2 cut(s)	137, 1499
Bso31I	GGTCTC	3 cut(s)	425, 545, 1160
BsoBI	CYCGRG	1 cut(s)	1495
Bsp1286I	GDGCHC	2 cut(s)	984, 1301
Bsp1407I	TGTACA	1 cut(s)	926
Bsp143I	GATC	2 cut(s)	64, 1555
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	1443
BspCNI	CTCAG	7 cut(s)	28, 604, 649, 925, 1033, 1066, 1194
BspFNI	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	3 cut(s)	700, 784, 1455
BspMAI	CTGCAG	2 cut(s)	1033, 1291
BspPI	GGATC	1 cut(s)	1550
BspT107I	GGYRCC	1 cut(s)	1453
BspTI	CTTAAG	2 cut(s)	299, 1517
BspTNI	GGTCTC	3 cut(s)	425, 545, 1160
BsrBI	CCGCTC	1 cut(s)	1597
BsrFI	RCCGGY	3 cut(s)	209, 367, 743
BsrGI	TGTACA	1 cut(s)	926
BsrI	ACTGG	1 cut(s)	1003
BssAI	RCCGGY	3 cut(s)	209, 367, 743
BssMI	GATC	2 cut(s)	64, 1555
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	9 cut(s)	435, 447, 501, 645, 654, 786, 1149, 1170, 1443
Bst2UI	CCWGG	2 cut(s)	177, 1560
Bst4CI	ACNGT	5 cut(s)	667, 733, 799, 964, 1250
Bst6I	CTCTTC	1 cut(s)	1092
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	299, 1517
BstAUI	TGTACA	1 cut(s)	926
BstBAI	YACGTR	2 cut(s)	1397, 1406
BstC8I	GCNNGC	4 cut(s)	137, 225, 369, 1361
BstDSI	CCRYGG	3 cut(s)	357, 1443, 1509
BstF5I	GGATG	4 cut(s)	149, 511, 598, 1369
BstFNI	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
BstHHI	GCGC	3 cut(s)	61, 1494, 1602
BstKTI	GATC	2 cut(s)	67, 1558
BstMBI	GATC	2 cut(s)	64, 1555
BstMCI	CGRYCG	1 cut(s)	368
BstNI	CCWGG	2 cut(s)	177, 1560
BstNSI	RCATGY	2 cut(s)	130, 227
BstSCI	CCNGG	4 cut(s)	175, 1494, 1495, 1558
BstSFI	CTRYAG	3 cut(s)	729, 1029, 1287
BstSLI	GKGCMC	1 cut(s)	1301
BstUI	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
BstV1I	GCAGC	9 cut(s)	281, 400, 583, 751, 905, 1015, 1286, 1301, 1387
BstV2I	GAAGAC	3 cut(s)	395, 1097, 1130
BstXI	CCANNNNNNTGG	2 cut(s)	1384, 1538
BstZI	CGGCCG	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	652
BtgI	CCRYGG	3 cut(s)	357, 1443, 1509
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	4 cut(s)	149, 511, 598, 1369
BtsI	GCAGTG	4 cut(s)	408, 630, 1299, 1645
BtsIMutI	CAGTG	5 cut(s)	408, 630, 738, 1299, 1645
Cac8I	GCNNGC	4 cut(s)	137, 225, 369, 1361
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	3 cut(s)	61, 1494, 1602
Cfr10I	RCCGGY	3 cut(s)	209, 367, 743
Cfr13I	GGNCC	5 cut(s)	699, 783, 1246, 1428, 1633
Cfr42I	CCGCGG	2 cut(s)	360, 1512
Cfr9I	CCCGGG	1 cut(s)	1495
CseI	GACGC	1 cut(s)	242
CspCI	CAANNNNNGTGG	4 cut(s)	958, 993, 1362, 1397
CviAII	CATG	7 cut(s)	127, 155, 224, 254, 985, 1243, 1444
DpnI	GATC	2 cut(s)	66, 1557
DpnII	GATC	2 cut(s)	64, 1555
DrdI	GACNNNNNNGTC	2 cut(s)	439, 1042
DseDI	GACNNNNNNGTC	2 cut(s)	439, 1042
EaeI	YGGCCR	4 cut(s)	133, 354, 365, 1506
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	1092
EarI	CTCTTC	1 cut(s)	1092
EciI	GGCGGA	2 cut(s)	530, 824
EclXI	CGGCCG	1 cut(s)	365
Eco130I	CCWWGG	9 cut(s)	435, 447, 501, 645, 654, 786, 1149, 1170, 1443
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	3 cut(s)	425, 545, 1160
Eco47I	GGWCC	3 cut(s)	1246, 1428, 1633
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	1116
Eco72I	CACGTG	2 cut(s)	1397, 1406
Eco88I	CYCGRG	1 cut(s)	1495
EcoRII	CCWGG	2 cut(s)	175, 1558
EcoT14I	CCWWGG	9 cut(s)	435, 447, 501, 645, 654, 786, 1149, 1170, 1443
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	9 cut(s)	435, 447, 501, 645, 654, 786, 1149, 1170, 1443
Esp3I	CGTCTC	2 cut(s)	1028, 1148
FaeI	CATG	7 cut(s)	130, 158, 227, 257, 988, 1246, 1447
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	2 cut(s)	137, 1499
FatI	CATG	7 cut(s)	126, 154, 223, 253, 984, 1242, 1443
FblI	GTMKAC	1 cut(s)	1608
FokI	GGATG	4 cut(s)	136, 518, 605, 1356
FriOI	GRGCYC	1 cut(s)	984
FspBI	CTAG	1 cut(s)	1182
GlaI	GCGC	3 cut(s)	60, 1493, 1601
GsaI	CCCAGC	2 cut(s)	108, 384
GsuI	CTGGAG	2 cut(s)	348, 359
HapII	CCGG	5 cut(s)	210, 368, 744, 1496, 1617
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	61, 1494, 1602
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	130, 158, 227, 257, 988, 1246, 1447
Hin6I	GCGC	3 cut(s)	59, 1492, 1600
HinP1I	GCGC	3 cut(s)	59, 1492, 1600
HinfI	GANTC	5 cut(s)	440, 1043, 1366, 1391, 1435
HpaII	CCGG	5 cut(s)	210, 368, 744, 1496, 1617
HphI	GGTGA	4 cut(s)	121, 412, 758, 1175
Hpy166II	GTNNAC	6 cut(s)	621, 687, 753, 927, 1609, 1633
Hpy188I	TCNGA	5 cut(s)	69, 265, 286, 639, 1528
Hpy188III	TCNNGA	2 cut(s)	985, 1354
Hpy8I	GTNNAC	6 cut(s)	621, 687, 753, 927, 1609, 1633
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyCH4III	ACNGT	5 cut(s)	667, 733, 799, 964, 1250
HpyCH4IV	ACGT	3 cut(s)	1157, 1396, 1405
HpyCH4V	TGCA	7 cut(s)	160, 227, 269, 1031, 1289, 1304, 1403
HpySE526I	ACGT	3 cut(s)	1157, 1396, 1405
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	130, 158, 227, 257, 988, 1246, 1447
HspAI	GCGC	3 cut(s)	59, 1492, 1600
KpnI	GGTACC	1 cut(s)	1457
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
KspI	CCGCGG	2 cut(s)	360, 1512
Kzo9I	GATC	2 cut(s)	64, 1555
LmnI	GCTCC	3 cut(s)	220, 1198, 1594
Lsp1109I	GCAGC	9 cut(s)	281, 400, 583, 751, 905, 1015, 1286, 1301, 1387
LweI	GCATC	6 cut(s)	256, 310, 496, 583, 1336, 1488
MaeI	CTAG	1 cut(s)	1182
MaeII	ACGT	3 cut(s)	1157, 1396, 1405
MaeIII	GTNAC	2 cut(s)	205, 1392
MalI	GATC	2 cut(s)	66, 1557
MbiI	CCGCTC	1 cut(s)	1597
MboI	GATC	2 cut(s)	64, 1555
MboII	GAAGA	6 cut(s)	124, 400, 1022, 1102, 1109, 1135
MhlI	GDGCHC	2 cut(s)	984, 1301
MluCI	AATT	3 cut(s)	691, 823, 988
MlyI	GAGTC	5 cut(s)	449, 1052, 1360, 1400, 1429
MmeI	TCCRAC	1 cut(s)	1397
MroNI	GCCGGC	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	300, 1518
MslI	CAYNNNNRTG	3 cut(s)	731, 797, 962
MspA1I	CMGCKG	5 cut(s)	104, 359, 920, 932, 1511
MspCI	CTTAAG	2 cut(s)	299, 1517
MspI	CCGG	5 cut(s)	210, 368, 744, 1496, 1617
MspR9I	CCNGG	4 cut(s)	177, 1496, 1497, 1560
MvaI	CCWGG	2 cut(s)	177, 1560
MvnI	CGCG	5 cut(s)	59, 359, 1492, 1511, 1602
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	1496, 1497
NcoI	CCATGG	1 cut(s)	1443
NdeII	GATC	2 cut(s)	64, 1555
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	7 cut(s)	130, 158, 227, 257, 988, 1246, 1447
NlaIV	GGNNCC	3 cut(s)	700, 784, 1455
NmeAIII	GCCGAG	5 cut(s)	343, 574, 727, 793, 1132
NmuCI	GTSAC	2 cut(s)	205, 1392
NspI	RCATGY	2 cut(s)	130, 227
OliI	CACNNNNGTG	3 cut(s)	731, 797, 962
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	984
PciI	ACATGT	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	3 cut(s)	488, 575, 1402
PdiI	GCCGGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	17
PleI	GAGTC	5 cut(s)	448, 1051, 1360, 1399, 1429
PmaCI	CACGTG	2 cut(s)	1397, 1406
PmlI	CACGTG	2 cut(s)	1397, 1406
PpsI	GAGTC	5 cut(s)	448, 1051, 1360, 1399, 1429
Ppu21I	YACGTR	2 cut(s)	1397, 1406
PscI	ACATGT	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	175, 1558
PspCI	CACGTG	2 cut(s)	1397, 1406
PspFI	CCCAGC	2 cut(s)	104, 380
PspGI	CCWGG	2 cut(s)	175, 1558
PspN4I	GGNNCC	3 cut(s)	700, 784, 1455
PspPI	GGNCC	5 cut(s)	699, 783, 1246, 1428, 1633
PstI	CTGCAG	2 cut(s)	1033, 1291
PvuII	CAGCTG	2 cut(s)	104, 932
RseI	CAYNNNNRTG	3 cut(s)	731, 797, 962
SacII	CCGCGG	2 cut(s)	360, 1512
SaqAI	TTAA	2 cut(s)	300, 1518
Sau3AI	GATC	2 cut(s)	64, 1555
Sau96I	GGNCC	5 cut(s)	699, 783, 1246, 1428, 1633
SchI	GAGTC	5 cut(s)	449, 1052, 1360, 1400, 1429
ScrFI	CCNGG	4 cut(s)	177, 1496, 1497, 1560
SduI	GDGCHC	2 cut(s)	984, 1301
SfaNI	GCATC	6 cut(s)	256, 310, 496, 583, 1336, 1488
SfcI	CTRYAG	3 cut(s)	729, 1029, 1287
SfiI	GGCCNNNNNGGCC	1 cut(s)	650
Sfr303I	CCGCGG	2 cut(s)	360, 1512
SgrBI	CCGCGG	2 cut(s)	360, 1512
SinI	GGWCC	3 cut(s)	1246, 1428, 1633
SmaI	CCCGGG	1 cut(s)	1497
SmiMI	CAYNNNNRTG	3 cut(s)	731, 797, 962
SmlI	CTYRAG	2 cut(s)	299, 1517
SmoI	CTYRAG	2 cut(s)	299, 1517
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	691, 823, 988
SspMI	CTAG	1 cut(s)	1182
StyD4I	CCNGG	4 cut(s)	175, 1494, 1495, 1558
StyI	CCWWGG	9 cut(s)	435, 447, 501, 645, 654, 786, 1149, 1170, 1443
TaaI	ACNGT	5 cut(s)	667, 733, 799, 964, 1250
TaiI	ACGT	3 cut(s)	1160, 1399, 1408
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	691, 823, 988
TatI	WGTACW	5 cut(s)	618, 684, 750, 816, 926
TauI	GCSGC	8 cut(s)	59, 326, 359, 362, 1082, 1511, 1514, 1600
Tru1I	TTAA	2 cut(s)	300, 1518
Tru9I	TTAA	2 cut(s)	300, 1518
TscAI	CASTG	5 cut(s)	415, 637, 738, 1306, 1645
TseFI	GTSAC	2 cut(s)	205, 1392
TseI	GCWGC	9 cut(s)	269, 413, 596, 764, 893, 1028, 1274, 1289, 1400
Tsp45I	GTSAC	2 cut(s)	205, 1392
TspDTI	ATGAA	2 cut(s)	1001, 1239
TspGWI	ACGGA	2 cut(s)	584, 638
TspMI	CCCGGG	1 cut(s)	1495
TspRI	CASTG	5 cut(s)	415, 637, 738, 1306, 1645
Vha464I	CTTAAG	2 cut(s)	299, 1517
VpaK11BI	GGWCC	3 cut(s)	1246, 1428, 1633
XceI	RCATGY	2 cut(s)	130, 227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XmaI	CCCGGG	1 cut(s)	1495
XmiI	GTMKAC	1 cut(s)	1608
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.