Rmu_co8483845.1_g000001

Embryonic protein DC-8-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8483845.1
Physical Location & Seq
Reverse (-)
724 .. 2309
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8483845.1_g000001.1.cds

Sequence Viewer

Length: 1482 bp
ccatcccatgtgcaacaagaagcgaagcctggtgttattgggtctgtttttagggctgtgaccggcacattggagcatgcaaaggaggctgttgtgggcaaaagccatgacacttctgatgcagcaagagagcgttcggaatacaccacacttaaggcgaaggaaacgactgatgcggctggagagaagctggaggagtataaggaggccgcggctcggccggcgaaggaggctggggagaagacgaaggaggtgaaggacactgctgcggagaaggccaaagagaccaaggagtctgccaaggggaaggggagtgagtatgcggattacacttcgcagaaggccaaggaggccaaggatgccgctgcggagaaggctaagcagacgaaagactatgttgccgagaccggaagtgaggctacggagaaggcgaaagagacaaaggatgctgcgatgaggaaggctgaggagtacacggattacactgctcagaaggccaaggaggccaaggataccacagtagggaaggctaaagagtacaccaattatggggccgagaaggcagaggaggccaaggacactacagtggggaaggccggtgagtacacgaactatgctgccgagaaggcaaagggggccaaggacactacggtggggaaggcggaggagtacaagaattacaccgcagaaaaggcaaaggagactgcggaggccaccaaagaaaaggcaaaagagactgcggaggcagccaaagacaagactaaagagacagcggagtatacagctgagaaagcaaaagaagggaaggacactactgtgagcaagttgggtgggctcatgaattacttgactggtaagaaagaagaaaccaaacagaaggcttcagagacggctgagactgtcaaagagaacactaaacaggtggctgaggcggcgagggagaagactgaagagactgccgaggcaactgaaaaaaccaaggagacgttgggtgagaccaaggaggaagctaggagaaagatggaggagctgaggctaagggagaaaggttatgaagcgagagcaggagacatggaccgtgatgacgaccgcgagattgaggcagctaagggtactgcagctaagggcactgcagcaaagagcaacatttttagctcacttgggagtgtgagtgatgccatcaagagcaagctgactcatccaaccaatgtggtggaggagtcacgtgctgcacgtgaggaggggagtacggggaggaccaagactcctgctatggtagatgtacctgtggagaaggtggagattggcatcagggacacgcgcccgggggctgtggccgcggcacttaagaagtctgaccagatgtttggtcaaactttcaacgatcctggtagtatgcgagatgagggcaaggtggttatggagcggcgcgtggtagacgaagccggaaatgtgcgtgtggaccgcagtggcaagatgtga

Protein Analysis

493

Amino Acids

53.46

Weight (kDa)

6.04

Isoelectric Point (pI)

21.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 1426
AccI GTMKAC 2 cut(s) 779, 1437
AccII CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
AclWI GGATC 1 cut(s) 1379
AcoI YGGCCR 2 cut(s) 218, 1335
AcuI CTGAAG 2 cut(s) 867, 969
AcvI CACGTG 2 cut(s) 1226, 1235
AfaI GTAC 7 cut(s) 473, 539, 605, 671, 1114, 1249, 1284
AfiI CCNNNNNNNGG 3 cut(s) 216, 522, 549
AflII CTTAAG 2 cut(s) 152, 1346
AgsI TTSAA 1 cut(s) 1381
AjnI CCWGG 2 cut(s) 28, 1387
AleI CACNNNNGTG 3 cut(s) 584, 650, 815
AluBI AGCT 8 cut(s) 190, 785, 1010, 1030, 1106, 1121, 1155, 1192
AluI AGCT 8 cut(s) 190, 785, 1010, 1030, 1106, 1121, 1155, 1192
AlwI GGATC 1 cut(s) 1379
Ama87I CYCGRG 1 cut(s) 1324
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
AspLEI GCGC 2 cut(s) 1323, 1431
AspS9I GGNCC 5 cut(s) 552, 636, 1075, 1257, 1462
AsuC2I CCSGG 2 cut(s) 1325, 1326
AsuHPI GGTGA 3 cut(s) 265, 611, 1004
AvaI CYCGRG 1 cut(s) 1324
AvaII GGWCC 3 cut(s) 1075, 1257, 1462
BaeGI GKGCMC 1 cut(s) 1130
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 1 cut(s) 837
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BbrPI CACGTG 2 cut(s) 1226, 1235
BbsI GAAGAC 2 cut(s) 248, 950
BbvCI CCTCAGC 3 cut(s) 465, 927, 1031
BccI CCATC 3 cut(s) 10, 1015, 1187
BceAI ACGGC 1 cut(s) 906
BciT130I CCWGG 2 cut(s) 30, 1389
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 2 cut(s) 1325, 1326
BfaI CTAG 1 cut(s) 1011
BfmI CTRYAG 3 cut(s) 582, 1116, 1131
BfrI CTTAAG 2 cut(s) 152, 1346
BfuI GTATCC 1 cut(s) 505
BglI GCCNNNNNGGC 4 cut(s) 350, 503, 560, 626
BlpI GCTNAGC 1 cut(s) 378
Bme1390I CCNGG 4 cut(s) 30, 1325, 1326, 1389
Bme18I GGWCC 3 cut(s) 1075, 1257, 1462
BmeT110I CYCGRG 1 cut(s) 1324
BmgT120I GGNCC 5 cut(s) 552, 636, 1075, 1257, 1462
BmiI GGNNCC 2 cut(s) 553, 637
BmrFI CCNGG 4 cut(s) 30, 1325, 1326, 1389
BmsI GCATC 6 cut(s) 109, 163, 349, 436, 1165, 1317
BpiI GAAGAC 2 cut(s) 248, 950
BpmI CTGGAG 2 cut(s) 201, 212
Bpu10I CCTNAGC 6 cut(s) 465, 927, 1031, 1037, 1107, 1122
Bpu1102I GCTNAGC 1 cut(s) 378
BpuMI CCSGG 2 cut(s) 1325, 1326
BsaAI YACGTR 2 cut(s) 1226, 1235
BsaBI GATNNNNATC 1 cut(s) 1307
BsaI GGTCTC 3 cut(s) 278, 398, 989
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 4 cut(s) 1156, 1186, 1249, 1279
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 522, 549
Bse118I RCCGGY 3 cut(s) 62, 220, 596
Bse1I ACTGG 1 cut(s) 856
Bse8I GATNNNNATC 1 cut(s) 1307
BseBI CCWGG 2 cut(s) 30, 1389
BseGI GGATG 3 cut(s) 364, 451, 1198
BseJI GATNNNNATC 1 cut(s) 1307
BseLI CCNNNNNNNGG 3 cut(s) 216, 522, 549
BseMII CTCAG 6 cut(s) 456, 503, 777, 885, 918, 1022
BseNI ACTGG 1 cut(s) 856
BseRI GAGGAG 7 cut(s) 209, 482, 581, 680, 1040, 1232, 1253
BseSI GKGCMC 1 cut(s) 1130
BseX3I CGGCCG 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 1215
Bsh1236I CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
Bsh1285I CGRYCG 2 cut(s) 221, 1090
BsiEI CGRYCG 2 cut(s) 221, 1090
BsiHKCI CYCGRG 1 cut(s) 1324
BsiSI CCGG 6 cut(s) 63, 221, 408, 597, 1325, 1446
BslFI GGGAC 1 cut(s) 1328
BslI CCNNNNNNNGG 3 cut(s) 216, 522, 549
BsmBI CGTCTC 2 cut(s) 881, 977
BsmFI GGGAC 1 cut(s) 1328
Bso31I GGTCTC 3 cut(s) 278, 398, 989
BsoBI CYCGRG 1 cut(s) 1324
Bsp1286I GDGCHC 2 cut(s) 837, 1130
Bsp143I GATC 1 cut(s) 1384
Bsp1720I GCTNAGC 1 cut(s) 378
BspCNI CTCAG 6 cut(s) 457, 502, 778, 886, 919, 1023
BspFNI CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 553, 637
BspMAI CTGCAG 2 cut(s) 1120, 1135
BspPI GGATC 1 cut(s) 1379
BspTI CTTAAG 2 cut(s) 152, 1346
BspTNI GGTCTC 3 cut(s) 278, 398, 989
BsrBI CCGCTC 1 cut(s) 1426
BsrFI RCCGGY 3 cut(s) 62, 220, 596
BsrI ACTGG 1 cut(s) 856
BssAI RCCGGY 3 cut(s) 62, 220, 596
BssMI GATC 1 cut(s) 1384
BssNAI GTATAC 1 cut(s) 780
Bst1107I GTATAC 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 30, 1389
Bst4CI ACNGT 6 cut(s) 520, 586, 652, 817, 901, 1079
Bst6I CTCTTC 1 cut(s) 945
BstAFI CTTAAG 2 cut(s) 152, 1346
BstBAI YACGTR 2 cut(s) 1226, 1235
BstC8I GCNNGC 3 cut(s) 78, 222, 1190
BstDSI CCRYGG 2 cut(s) 210, 1338
BstF5I GGATG 3 cut(s) 364, 451, 1198
BstFNI CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
BstHHI GCGC 2 cut(s) 1323, 1431
BstKTI GATC 1 cut(s) 1387
BstMBI GATC 1 cut(s) 1384
BstMCI CGRYCG 2 cut(s) 221, 1090
BstNI CCWGG 2 cut(s) 30, 1389
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 4 cut(s) 28, 1323, 1324, 1387
BstSFI CTRYAG 3 cut(s) 582, 1116, 1131
BstSLI GKGCMC 1 cut(s) 1130
BstUI CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
BstV2I GAAGAC 2 cut(s) 248, 950
BstXI CCANNNNNNTGG 2 cut(s) 1213, 1367
BstZ17I GTATAC 1 cut(s) 780
BstZI CGGCCG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 505
BtgI CCRYGG 2 cut(s) 210, 1338
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 3 cut(s) 364, 451, 1198
BtsI GCAGTG 4 cut(s) 261, 483, 1128, 1474
BtsIMutI CAGTG 5 cut(s) 261, 483, 591, 1128, 1474
Cac8I GCNNGC 3 cut(s) 78, 222, 1190
CciI TCATGA 1 cut(s) 837
CfoI GCGC 2 cut(s) 1323, 1431
Cfr10I RCCGGY 3 cut(s) 62, 220, 596
Cfr13I GGNCC 5 cut(s) 552, 636, 1075, 1257, 1462
Cfr42I CCGCGG 2 cut(s) 213, 1341
Cfr9I CCCGGG 1 cut(s) 1324
Csp6I GTAC 7 cut(s) 472, 538, 604, 670, 1113, 1248, 1283
CspCI CAANNNNNGTGG 4 cut(s) 811, 846, 1191, 1226
CviAII CATG 5 cut(s) 8, 77, 107, 838, 1072
CviQI GTAC 7 cut(s) 472, 538, 604, 670, 1113, 1248, 1283
DpnI GATC 1 cut(s) 1386
DpnII GATC 1 cut(s) 1384
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 218, 1335
EagI CGGCCG 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
EciI GGCGGA 1 cut(s) 677
EclXI CGGCCG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 837
Eco31I GGTCTC 3 cut(s) 278, 398, 989
Eco47I GGWCC 3 cut(s) 1075, 1257, 1462
Eco52I CGGCCG 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 867, 969
Eco72I CACGTG 2 cut(s) 1226, 1235
Eco88I CYCGRG 1 cut(s) 1324
EcoRII CCWGG 2 cut(s) 28, 1387
EcoT38I GRGCYC 1 cut(s) 837
Esp3I CGTCTC 2 cut(s) 881, 977
FaeI CATG 5 cut(s) 11, 80, 110, 841, 1075
FaqI GGGAC 1 cut(s) 1328
FatI CATG 5 cut(s) 7, 76, 106, 837, 1071
FblI GTMKAC 2 cut(s) 779, 1437
FokI GGATG 3 cut(s) 371, 458, 1185
FriOI GRGCYC 1 cut(s) 837
FspBI CTAG 1 cut(s) 1011
GlaI GCGC 2 cut(s) 1322, 1430
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 201, 212
HapII CCGG 6 cut(s) 63, 221, 408, 597, 1325, 1446
HhaI GCGC 2 cut(s) 1323, 1431
Hin1II CATG 5 cut(s) 11, 80, 110, 841, 1075
Hin6I GCGC 2 cut(s) 1321, 1429
HinP1I GCGC 2 cut(s) 1321, 1429
HinfI GANTC 4 cut(s) 293, 1195, 1220, 1264
HpaII CCGG 6 cut(s) 63, 221, 408, 597, 1325, 1446
HphI GGTGA 3 cut(s) 265, 611, 1004
Hpy166II GTNNAC 6 cut(s) 474, 540, 606, 780, 1438, 1462
Hpy188I TCNGA 5 cut(s) 118, 139, 492, 886, 1357
Hpy188III TCNNGA 2 cut(s) 838, 1183
Hpy8I GTNNAC 6 cut(s) 474, 540, 606, 780, 1438, 1462
HpyCH4III ACNGT 6 cut(s) 520, 586, 652, 817, 901, 1079
HpyCH4IV ACGT 3 cut(s) 986, 1225, 1234
HpyCH4V TGCA 6 cut(s) 13, 80, 122, 1118, 1133, 1232
HpySE526I ACGT 3 cut(s) 986, 1225, 1234
Hsp92II CATG 5 cut(s) 11, 80, 110, 841, 1075
HspAI GCGC 2 cut(s) 1321, 1429
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
KspI CCGCGG 2 cut(s) 213, 1341
Kzo9I GATC 1 cut(s) 1384
LmnI GCTCC 3 cut(s) 73, 1027, 1423
LweI GCATC 6 cut(s) 109, 163, 349, 436, 1165, 1317
MaeI CTAG 1 cut(s) 1011
MaeII ACGT 3 cut(s) 986, 1225, 1234
MaeIII GTNAC 2 cut(s) 58, 1221
MalI GATC 1 cut(s) 1386
MbiI CCGCTC 1 cut(s) 1426
MboI GATC 1 cut(s) 1384
MboII GAAGA 4 cut(s) 253, 875, 955, 962
MhlI GDGCHC 2 cut(s) 837, 1130
MluCI AATT 3 cut(s) 544, 676, 841
MlyI GAGTC 4 cut(s) 302, 1189, 1229, 1258
MmeI TCCRAC 1 cut(s) 1226
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 2 cut(s) 153, 1347
MslI CAYNNNNRTG 3 cut(s) 584, 650, 815
MspA1I CMGCKG 5 cut(s) 212, 365, 773, 785, 1340
MspCI CTTAAG 2 cut(s) 152, 1346
MspI CCGG 6 cut(s) 63, 221, 408, 597, 1325, 1446
MspR9I CCNGG 4 cut(s) 30, 1325, 1326, 1389
MvaI CCWGG 2 cut(s) 30, 1389
MvnI CGCG 5 cut(s) 212, 1092, 1321, 1340, 1431
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 2 cut(s) 1325, 1326
NdeII GATC 1 cut(s) 1384
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 5 cut(s) 11, 80, 110, 841, 1075
NlaIV GGNNCC 2 cut(s) 553, 637
NmeAIII GCCGAG 5 cut(s) 196, 427, 580, 646, 985
NmuCI GTSAC 2 cut(s) 58, 1221
NspI RCATGY 1 cut(s) 80
OliI CACNNNNGTG 3 cut(s) 584, 650, 815
PaeI GCATGC 1 cut(s) 80
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 2 cut(s) 428, 1231
PdiI GCCGGC 1 cut(s) 222
PleI GAGTC 4 cut(s) 301, 1189, 1228, 1258
PmaCI CACGTG 2 cut(s) 1226, 1235
PmlI CACGTG 2 cut(s) 1226, 1235
PpsI GAGTC 4 cut(s) 301, 1189, 1228, 1258
Ppu21I YACGTR 2 cut(s) 1226, 1235
Psp6I CCWGG 2 cut(s) 28, 1387
PspCI CACGTG 2 cut(s) 1226, 1235
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 28, 1387
PspN4I GGNNCC 2 cut(s) 553, 637
PspPI GGNCC 5 cut(s) 552, 636, 1075, 1257, 1462
PstI CTGCAG 2 cut(s) 1120, 1135
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 7 cut(s) 473, 539, 605, 671, 1114, 1249, 1284
RsaNI GTAC 7 cut(s) 472, 538, 604, 670, 1113, 1248, 1283
RseI CAYNNNNRTG 3 cut(s) 584, 650, 815
SacII CCGCGG 2 cut(s) 213, 1341
SaqAI TTAA 2 cut(s) 153, 1347
Sau3AI GATC 1 cut(s) 1384
Sau96I GGNCC 5 cut(s) 552, 636, 1075, 1257, 1462
SchI GAGTC 4 cut(s) 302, 1189, 1229, 1258
ScrFI CCNGG 4 cut(s) 30, 1325, 1326, 1389
SduI GDGCHC 2 cut(s) 837, 1130
SfaNI GCATC 6 cut(s) 109, 163, 349, 436, 1165, 1317
SfcI CTRYAG 3 cut(s) 582, 1116, 1131
SfiI GGCCNNNNNGGCC 2 cut(s) 350, 503
Sfr303I CCGCGG 2 cut(s) 213, 1341
SgrBI CCGCGG 2 cut(s) 213, 1341
SinI GGWCC 3 cut(s) 1075, 1257, 1462
SmaI CCCGGG 1 cut(s) 1326
SmiMI CAYNNNNRTG 3 cut(s) 584, 650, 815
SmlI CTYRAG 2 cut(s) 152, 1346
SmoI CTYRAG 2 cut(s) 152, 1346
SphI GCATGC 1 cut(s) 80
Sse9I AATT 3 cut(s) 544, 676, 841
SspMI CTAG 1 cut(s) 1011
StyD4I CCNGG 4 cut(s) 28, 1323, 1324, 1387
TaaI ACNGT 6 cut(s) 520, 586, 652, 817, 901, 1079
TaiI ACGT 3 cut(s) 989, 1228, 1237
TasI AATT 3 cut(s) 544, 676, 841
TatI WGTACW 4 cut(s) 471, 537, 603, 669
TauI GCSGC 8 cut(s) 179, 212, 215, 365, 935, 1340, 1343, 1429
Tru1I TTAA 2 cut(s) 153, 1347
Tru9I TTAA 2 cut(s) 153, 1347
TscAI CASTG 5 cut(s) 268, 490, 591, 1135, 1474
TseFI GTSAC 2 cut(s) 58, 1221
Tsp45I GTSAC 2 cut(s) 58, 1221
TspDTI ATGAA 2 cut(s) 854, 1068
TspGWI ACGGA 2 cut(s) 437, 491
TspMI CCCGGG 1 cut(s) 1324
TspRI CASTG 5 cut(s) 268, 490, 591, 1135, 1474
Vha464I CTTAAG 2 cut(s) 152, 1346
VpaK11BI GGWCC 3 cut(s) 1075, 1257, 1462
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 985
XmaI CCCGGG 1 cut(s) 1324
XmiI GTMKAC 2 cut(s) 779, 1437
XspI CTAG 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.