Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011105

Physical Location & Seq

Genomic Coordinates Forward (+)

35784689 .. 35789335

Gene Structure 4647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1280600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTATGGAGCTAGAAGAAGCAGAGGGGAAGACTGTATTGTGCCTTCTGACGGACCCAGATGGGACTCCATTAGGAAGCTCCGTCTACCTTCCTCAGAACACTGAGCCGCAACACCTTCAACAAATCGTCAATCAGCTTCTTAAAAATGAGGAGAGGCTACCTTATGCTTTCTATATACAAGATCAGGAACTTCTTGAGTCACTTGGAAAATATGCTGAGAAGAAGAAAATTTCGGTGGAGAAGGTACTCAACATAGTTTATCAACCACAAGCTGTTTTCCGAATTCGTCCCGTTCATCGTTGCTCGGCAACAATTGCTGGTCACACAGAAGCTGTACTCTCAGTTGCTTTTAGTCCTGATGGCCAACAGTTGGCTAGCGGTTCTGGTGATACAACTGTCCGACTATGGGACCTTAATACTCAGACGCCATTGCACACATGTACAGGACATAAGAATTGGGTCCTATCTATTGCATGGTCACCTGATGGTAAGCATCTTGTTAGTGGCAGCAAGTCTGGAGAACTTCAATGTTGGGATCCACAGACAGGGAAGCCATCAGGCCATTCACTTGTTGGTCACAAGAAATGGATTACTGGAATTTCTTGGGAACCAGTCCACCTTAGCGCTCCGTGTCGACGCTTTGTAAGTGCTAGCAAAGATGGTGATGCACGCATATGGGATGTTACGTTGAGGAAATCTGTTATATGTCTTAGTGGCCACACCCTTGCAGTAACTTGTGTAAAATGGGGTGGAGATGGTGTCATATATACAGCATTTGATCACACTGGCAAGCAATATTCGTCTCCAGAGGAAATGAAGAAGAACTCACCAAAGCTTGAAGACAGATTTTTTGAAGCTTTTCTTTTGAGAGTTTTAATAACATTGATTACCACATGTCAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005840 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0080008 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NLE WD40

Protein Analysis

303

Amino Acids

33.61

Weight (kDa)

6.83

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NLE	PF08154	14 - 72	4.4e-13	NLE (NUC135) domain
Beta-prop_Aladin	PF25460	97 - 183	2.2e-08	Aladin seven-bladed propeller
WD40_Prp19	PF24814	100 - 147	1.1e-08	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	100 - 167	6.2e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	100 - 202	2.8e-22	WDR3 first beta-propeller domain
WD40	PF00400	101 - 138	1.9e-12	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	101 - 185	1.6e-15	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	101 - 157	3.5e-13	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	103 - 150	3.4e-09	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	103 - 256	1.2e-16	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	104 - 203	9.3e-06	WDR36/Utp21 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	104 - 205	8.8e-12	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	105 - 235	5.8e-10	WDR55
Beta-prop_WDR5	PF25175	105 - 256	1.5e-31	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	105 - 188	7.3e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_1st	PF24780	106 - 170	1.3e-06	MABP1/WDR62 first WD40 domain
Beta-prop_EML	PF23409	108 - 205	8.2e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_IFT140_1st	PF23383	110 - 228	3.3e-06	IFT140 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	111 - 268	4e-14	WDR3 second beta-propeller domain
Beta-prop_WDR19_1st	PF23389	111 - 204	6.8e-07	WDR19 first beta-propeller
Beta-prop_IFT122_1st	PF23381	113 - 255	1.7e-07	IFT122 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	123 - 230	8.5e-07	WDR90/POC16, second beta-propeller
WD40	PF00400	143 - 180	2.2e-10	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	150 - 265	2e-12	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	151 - 205	1.1e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	151 - 255	2.1e-17	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	165 - 250	2.6e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	190 - 251	2.9e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52820
fragaria_vesca	FvH4_7g01500
malus_domestica	MD02G1305600.v1.1 MD09G1280600.v1.1 MD17G1287700.v1.1
prunus_persica	Prupe.2G020500_v2.0.a1
pyrus_communis	pycom02g25610 pycom17g27070
rosa_chinensis	RchiOBHm_Chr1g0317321
rosa_laevigata	RLG00000029568 RLG00000030606
rosa_multiflora	Rmu_sc0005092.1_g000002 Rmu_sc0013869.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330490
rosa_rugosa	Rorug01G0015900
rosa_samantha	Rh1AG027300 Rh1BG023200 Rh1CG025300 Rh1DG045900
rosa_wichuraiana	Rw1G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	2 cut(s)	87, 637
AciI	CCGC	2 cut(s)	110, 381
AclWI	GGATC	2 cut(s)	533, 546
AcoI	YGGCCR	2 cut(s)	364, 718
AcsI	RAATTY	3 cut(s)	231, 285, 600
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	3 cut(s)	249, 339, 445
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	52, 373, 409, 548
AflIII	ACRYGT	2 cut(s)	440, 896
AgsI	TTSAA	4 cut(s)	122, 530, 842, 857
AluBI	AGCT	7 cut(s)	13, 81, 139, 275, 335, 838, 860
AluI	AGCT	7 cut(s)	13, 81, 139, 275, 335, 838, 860
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	2 cut(s)	533, 546
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	3 cut(s)	364, 562, 718
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	3 cut(s)	231, 285, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	836, 868
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	55, 412, 463
AsuHPI	GGTGA	4 cut(s)	401, 474, 677, 822
AsuNHI	GCTAGC	2 cut(s)	377, 653
AvaII	GGWCC	3 cut(s)	55, 412, 463
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BalI	TGGCCA	2 cut(s)	366, 720
BamHI	GGATCC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	2 cut(s)	38, 849
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	6 cut(s)	56, 356, 482, 565, 656, 752
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	810
BfaI	CTAG	3 cut(s)	14, 378, 654
BfoI	RGCGCY	1 cut(s)	630
BisI	GCNGC	2 cut(s)	110, 511
BlsI	GCNGC	2 cut(s)	111, 512
Bme18I	GGWCC	3 cut(s)	55, 412, 463
BmgT120I	GGNCC	3 cut(s)	55, 412, 463
BmiI	GGNNCC	5 cut(s)	57, 413, 464, 540, 612
BmsI	GCATC	2 cut(s)	505, 658
BmtI	GCTAGC	2 cut(s)	381, 657
BpiI	GAAGAC	2 cut(s)	38, 849
BpmI	CTGGAG	2 cut(s)	540, 792
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 373, 409, 548
Bse1I	ACTGG	3 cut(s)	601, 614, 793
Bse3DI	GCAATG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	4 cut(s)	52, 373, 409, 548
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	5 cut(s)	96, 110, 210, 357, 437
BseNI	ACTGG	3 cut(s)	601, 614, 793
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	522
BshFI	GGCC	3 cut(s)	366, 564, 720
BslFI	GGGAC	3 cut(s)	79, 276, 425
BslI	CCNNNNNNNGG	4 cut(s)	52, 373, 409, 548
BsmAI	GTCTC	1 cut(s)	810
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	3 cut(s)	79, 276, 425
BsnI	GGCC	3 cut(s)	366, 564, 720
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	184, 538, 781
BspACI	CCGC	2 cut(s)	110, 381
BspANI	GGCC	3 cut(s)	366, 564, 720
BspCNI	CTCAG	5 cut(s)	97, 109, 211, 356, 436
BspLI	GGNNCC	5 cut(s)	57, 413, 464, 540, 612
BspOI	GCTAGC	2 cut(s)	381, 657
BspPI	GGATC	2 cut(s)	533, 546
BsrDI	GCAATG	1 cut(s)	431
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	601, 614, 793
BssMI	GATC	3 cut(s)	184, 538, 781
BssNI	GRCGYC	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	37, 372, 400
BstACI	GRCGYC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	379, 655, 673, 794
BstDEI	CTNAG	7 cut(s)	96, 105, 219, 343, 423, 623, 713
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	688
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	3 cut(s)	187, 541, 784
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	3 cut(s)	184, 538, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	444, 900
BstPI	GGTNACC	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	2 cut(s)	38, 849
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	366, 564, 720
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	3 cut(s)	102, 786, 908
Cac8I	GCNNGC	4 cut(s)	379, 655, 673, 794
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	3 cut(s)	55, 412, 463
CseI	GACGC	2 cut(s)	436, 648
Csp6I	GTAC	3 cut(s)	248, 338, 444
CviAII	CATG	3 cut(s)	441, 477, 897
CviQI	GTAC	3 cut(s)	248, 338, 444
DdeI	CTNAG	7 cut(s)	96, 105, 219, 343, 423, 623, 713
DpnI	GATC	3 cut(s)	186, 540, 783
DpnII	GATC	3 cut(s)	184, 538, 781
EaeI	YGGCCR	2 cut(s)	364, 718
Eco47I	GGWCC	3 cut(s)	55, 412, 463
Eco47III	AGCGCT	1 cut(s)	628
Eco91I	GGTNACC	1 cut(s)	480
EcoO109I	RGGNCCY	2 cut(s)	412, 463
EcoO65I	GGTNACC	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	3 cut(s)	444, 480, 900
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	3 cut(s)	79, 276, 425
FatI	CATG	3 cut(s)	440, 476, 896
FauNDI	CATATG	1 cut(s)	677
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	2 cut(s)	87, 637
Fnu4HI	GCNGC	2 cut(s)	110, 511
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	2 cut(s)	110, 511
FspBI	CTAG	3 cut(s)	14, 378, 654
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	2 cut(s)	110, 511
GsuI	CTGGAG	2 cut(s)	540, 792
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	366, 564, 720
HgaI	GACGC	2 cut(s)	436, 648
HhaI	GCGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	444, 480, 900
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HindIII	AAGCTT	2 cut(s)	836, 858
HinfI	GANTC	2 cut(s)	67, 200
HphI	GGTGA	4 cut(s)	401, 474, 677, 822
Hpy166II	GTNNAC	3 cut(s)	88, 619, 638
Hpy188I	TCNGA	5 cut(s)	51, 99, 284, 404, 426
Hpy188III	TCNNGA	5 cut(s)	188, 197, 359, 519, 809
Hpy8I	GTNNAC	3 cut(s)	88, 619, 638
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	4 cut(s)	56, 101, 128, 238
HpyCH4III	ACNGT	3 cut(s)	37, 372, 400
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	4 cut(s)	436, 476, 671, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	7 cut(s)	96, 105, 219, 343, 423, 623, 713
HpySE526I	ACGT	1 cut(s)	689
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	444, 480, 900
HspAI	GCGC	1 cut(s)	627
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	184, 538, 781
LmnI	GCTCC	3 cut(s)	10, 86, 634
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	2 cut(s)	505, 658
MaeI	CTAG	3 cut(s)	14, 378, 654
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	6 cut(s)	201, 323, 480, 578, 685, 733
MalI	GATC	3 cut(s)	186, 540, 783
MboI	GATC	3 cut(s)	184, 538, 781
MboII	GAAGA	7 cut(s)	29, 43, 235, 238, 832, 835, 854
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	538
MlsI	TGGCCA	2 cut(s)	366, 720
MluCI	AATT	5 cut(s)	231, 285, 315, 457, 600
MluNI	TGGCCA	2 cut(s)	366, 720
MlyI	GAGTC	2 cut(s)	61, 209
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	6 cut(s)	19, 105, 145, 150, 687, 805
Mox20I	TGGCCA	2 cut(s)	366, 720
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	2 cut(s)	366, 720
MseI	TTAA	3 cut(s)	144, 417, 878
MslI	CAYNNNNRTG	2 cut(s)	676, 901
Msp20I	TGGCCA	2 cut(s)	366, 720
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	677
NdeII	GATC	3 cut(s)	184, 538, 781
NheI	GCTAGC	2 cut(s)	377, 653
NlaIII	CATG	3 cut(s)	444, 480, 900
NlaIV	GGNNCC	5 cut(s)	57, 413, 464, 540, 612
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	4 cut(s)	201, 323, 480, 578
NspI	RCATGY	2 cut(s)	444, 900
PciI	ACATGT	2 cut(s)	440, 896
PdmI	GAANNNNTTC	1 cut(s)	861
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	111, 512
PleI	GAGTC	2 cut(s)	61, 208
PpsI	GAGTC	2 cut(s)	61, 208
PpuMI	RGGWCCY	2 cut(s)	412, 463
PscI	ACATGT	2 cut(s)	440, 896
Psp5II	RGGWCCY	2 cut(s)	412, 463
PspEI	GGTNACC	1 cut(s)	480
PspN4I	GGNNCC	5 cut(s)	57, 413, 464, 540, 612
PspPI	GGNCC	3 cut(s)	55, 412, 463
PspPPI	RGGWCCY	2 cut(s)	412, 463
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	3 cut(s)	249, 339, 445
RsaNI	GTAC	3 cut(s)	248, 338, 444
RseI	CAYNNNNRTG	2 cut(s)	676, 901
SalI	GTCGAC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	144, 417, 878
SatI	GCNGC	2 cut(s)	110, 511
Sau3AI	GATC	3 cut(s)	184, 538, 781
Sau96I	GGNCC	3 cut(s)	55, 412, 463
SchI	GAGTC	2 cut(s)	61, 209
SfaNI	GCATC	2 cut(s)	505, 658
SinI	GGWCC	3 cut(s)	55, 412, 463
SmiMI	CAYNNNNRTG	2 cut(s)	676, 901
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	5 cut(s)	231, 285, 315, 457, 600
SsiI	CCGC	2 cut(s)	110, 381
SspI	AATATT	1 cut(s)	800
SspMI	CTAG	3 cut(s)	14, 378, 654
TaaI	ACNGT	3 cut(s)	37, 372, 400
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	1 cut(s)	637
TasI	AATT	5 cut(s)	231, 285, 315, 457, 600
TatI	WGTACW	2 cut(s)	337, 443
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	144, 417, 878
Tru9I	TTAA	3 cut(s)	144, 417, 878
TscAI	CASTG	3 cut(s)	109, 793, 908
TseFI	GTSAC	4 cut(s)	201, 323, 480, 578
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	4 cut(s)	201, 323, 480, 578
TspDTI	ATGAA	2 cut(s)	287, 833
TspGWI	ACGGA	3 cut(s)	68, 73, 621
TspRI	CASTG	3 cut(s)	109, 793, 908
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	3 cut(s)	55, 412, 463
XapI	RAATTY	3 cut(s)	231, 285, 600
XceI	RCATGY	2 cut(s)	444, 900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XmiI	GTMKAC	2 cut(s)	87, 637
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	3 cut(s)	14, 378, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.