Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011105

Physical Location & Seq

Genomic Coordinates Reverse (-)

2809189 .. 2810322

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATTATTCAGGATTACAATGGCCTTGTACCAATTCACACCATTGACATGGCTGCACTGTTCTTTTGGGTGCAGATCAAAAACATATCCCCTGCTTTGGAGGAGCCGGAAACCATCAAAGCTGTTGCTTCTATTGCAAGTAACTACCTCAACATGGATGATAAACTGTTTAATGCAACTGGAAACATCCGTGTGCGGGTTGCCCATGCTCTAGATAAACCTTTCTTCCTGAGGAAAACCCTAAAACTTACTCAAGGTATTGTTGAAGAAATTGATTTATTTTTTGAGAACTTATTGGGGTTGTGTAAGAATTGTAACCTAGTATTCCATGAGGATGGTAAGTGCAAGGCCACCCACCGGTCATCTATGCAACAGGGAGCTTTACAAAAGGAGAACAGGTTGGAACTTCCAAACCCTTTCCAGAATGTAATAAATGGAGGCTTTGCAACTGGTGGCTTTAGTTTTCAAGGCAATCGAACCAGTGCACAAATTCCTTGCTCTCTCTTTGGTCTCAAGGAATCTATGAAGCCTCGAAGACCTGTGGTCATTAGGAAAGAGACATTGGAAAACTCAGAGGGTGTGGAAGGCTCTAGGGCATTGATGCCTATTGACACAAACATAGACATGAAATTACCCAGTGAGGTGGAACATTCTGCAGGTATGGGGAATACTCAAGTGAATGATGTTTTGGTAGCTCCAAACCTTGAAGTAACTTGTGTGATTGAACTTGAATCTGAGAGACTTGAGACTGGGGGTAATGTTGCCCCTACTTTGGAGACACAAGCTGAGCAGCGGGCAATCACAACAAATACAGAGATGCAGGAGAAGGAAAATGAGGAAGATACACCTCGAGTAGAGAAATGTAGCAAGTCTCCATCTCCCAAGGTGTCTCCTAAAAAACTTAAGGAAGGCAACACGGGGGGTTTCCTTGAAGGTCAGCTTGAGGTTGCTCTCGTGAAAAAGTTGAAACCACCAGTTCAGTTCACAGCCAAAGCTCTAGGATTAGTTGAAGCTCTAGGAGGCCTTTTCGTCTCGAAAAAGATCCCAATGCAATCGGGATTAATGCATTCCAAGAAGAAAAGGGGTAGACCACTGGGTGGGAAAAATAAAAACCCGCAAAAAAGTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005840 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0080008 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NLE WD40

Protein Analysis

377

Amino Acids

41.49

Weight (kDa)

8.6

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52820
fragaria_vesca	FvH4_7g01500
malus_domestica	MD02G1305600.v1.1 MD09G1280600.v1.1 MD17G1287700.v1.1
prunus_persica	Prupe.2G020500_v2.0.a1
pyrus_communis	pycom02g25610 pycom17g27070
rosa_chinensis	RchiOBHm_Chr1g0317321
rosa_laevigata	RLG00000029568 RLG00000030606
rosa_multiflora	Rmu_sc0005092.1_g000002 Rmu_sc0013869.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330490
rosa_rugosa	Rorug01G0015900
rosa_samantha	Rh1AG027300 Rh1BG023200 Rh1CG025300 Rh1DG045900
rosa_wichuraiana	Rw1G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	647
AccB7I	CCANNNNNTGG	1 cut(s)	1097
AccI	GTMKAC	1 cut(s)	1087
AciI	CCGC	3 cut(s)	196, 793, 1115
AclWI	GGATC	1 cut(s)	1036
AcsI	RAATTY	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	1097
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	6 cut(s)	97, 154, 196, 357, 772, 1097
AflII	CTTAAG	1 cut(s)	902
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	8 cut(s)	266, 467, 707, 725, 731, 932, 967, 1010
AhdI	GACNNNNNGTC	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	4 cut(s)	545, 577, 671, 703
AluBI	AGCT	7 cut(s)	122, 380, 695, 785, 940, 995, 1013
AluI	AGCT	7 cut(s)	122, 380, 695, 785, 940, 995, 1013
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	8 cut(s)	515, 551, 733, 740, 770, 876, 894, 1036
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	1036
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	3 cut(s)	22, 348, 1021
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	53, 790
ApoI	RAATTY	1 cut(s)	489
AseI	ATTAAT	1 cut(s)	1061
AsiGI	ACCGGT	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	849
AxyI	CCTNAGG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	40, 802
BccI	CCATC	3 cut(s)	122, 329, 883
BcoDI	GTCTC	8 cut(s)	515, 551, 733, 740, 770, 876, 894, 1036
BfaI	CTAG	5 cut(s)	212, 320, 591, 998, 1016
BfmI	CTRYAG	1 cut(s)	654
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	2 cut(s)	54, 791
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	2 cut(s)	55, 792
BmeRI	GACNNNNNGTC	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	849
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	3 cut(s)	630, 759, 1103
BmsI	GCATC	2 cut(s)	591, 807
BmuI	ACTGGG	3 cut(s)	630, 759, 1103
BpiI	GAAGAC	1 cut(s)	541
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	5 cut(s)	237, 497, 657, 764, 962
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 154, 196, 357, 772, 1097
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	7 cut(s)	184, 454, 480, 636, 754, 974, 1098
Bse21I	CCTNAGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	3 cut(s)	163, 186, 340
BseLI	CCNNNNNNNGG	6 cut(s)	97, 154, 196, 357, 772, 1097
BseMII	CTCAG	4 cut(s)	221, 585, 726, 777
BseNI	ACTGG	7 cut(s)	184, 454, 480, 636, 754, 974, 1098
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	40, 802
BsgI	GTGCAG	2 cut(s)	39, 92
BshFI	GGCC	3 cut(s)	24, 350, 1023
BshTI	ACCGGT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	2 cut(s)	107, 358
BslI	CCNNNNNNNGG	6 cut(s)	97, 154, 196, 357, 772, 1097
BsmAI	GTCTC	8 cut(s)	515, 551, 733, 740, 770, 876, 894, 1036
BsmBI	CGTCTC	1 cut(s)	1036
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	3 cut(s)	24, 350, 1023
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	75, 1041
Bsp1720I	GCTNAGC	1 cut(s)	786
BspACI	CCGC	3 cut(s)	196, 793, 1115
BspANI	GGCC	3 cut(s)	24, 350, 1023
BspCNI	CTCAG	4 cut(s)	222, 584, 727, 778
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	1 cut(s)	1036
BspTI	CTTAAG	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	7 cut(s)	184, 454, 480, 636, 754, 974, 1098
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	2 cut(s)	75, 1041
BssSI	CACGAG	1 cut(s)	953
BssT1I	CCWWGG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	953
Bst4CI	ACNGT	2 cut(s)	60, 168
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	4 cut(s)	230, 571, 735, 786
BstF5I	GGATG	3 cut(s)	163, 186, 340
BstKTI	GATC	2 cut(s)	78, 1044
BstMAI	GTCTC	8 cut(s)	515, 551, 733, 740, 770, 876, 894, 1036
BstMBI	GATC	2 cut(s)	75, 1041
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	40, 802
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	1041
BstXI	CCANNNNNNTGG	3 cut(s)	49, 335, 643
BstYI	RGATCY	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	24, 350, 1023
BtsCI	GGATG	3 cut(s)	163, 186, 340
BtsIMutI	CAGTG	4 cut(s)	56, 487, 643, 1091
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	29
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	5 cut(s)	49, 154, 206, 329, 625
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	4 cut(s)	230, 571, 735, 786
DpnI	GATC	2 cut(s)	77, 1043
DpnII	GATC	2 cut(s)	75, 1041
DraIII	CACNNNGTG	1 cut(s)	1097
DriI	GACNNNNNGTC	1 cut(s)	542
Eam1105I	GACNNNNNGTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	1023
Eco31I	GGTCTC	1 cut(s)	515
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	882
Esp3I	CGTCTC	1 cut(s)	1036
FaeI	CATG	5 cut(s)	52, 157, 209, 332, 628
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FatI	CATG	5 cut(s)	48, 153, 205, 328, 624
FauI	CCCGC	3 cut(s)	189, 786, 1122
FblI	GTMKAC	1 cut(s)	1087
Fnu4HI	GCNGC	2 cut(s)	54, 791
FokI	GGATG	3 cut(s)	170, 173, 347
Fsp4HI	GCNGC	2 cut(s)	54, 791
FspBI	CTAG	5 cut(s)	212, 320, 591, 998, 1016
GluI	GCNGC	2 cut(s)	54, 791
HaeIII	GGCC	3 cut(s)	24, 350, 1023
HapII	CCGG	2 cut(s)	107, 358
Hin1II	CATG	5 cut(s)	52, 157, 209, 332, 628
HinfI	GANTC	2 cut(s)	518, 731
HpaII	CCGG	2 cut(s)	107, 358
Hpy166II	GTNNAC	3 cut(s)	485, 984, 1088
Hpy188I	TCNGA	2 cut(s)	574, 736
Hpy188III	TCNNGA	7 cut(s)	11, 212, 229, 421, 955, 1033, 1056
Hpy8I	GTNNAC	3 cut(s)	485, 984, 1088
HpyAV	CCTTC	4 cut(s)	578, 820, 902, 926
HpyCH4III	ACNGT	2 cut(s)	60, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	4 cut(s)	230, 571, 735, 786
Hsp92II	CATG	5 cut(s)	52, 157, 209, 332, 628
Kzo9I	GATC	2 cut(s)	75, 1041
LmnI	GCTCC	3 cut(s)	103, 377, 700
Lsp1109I	GCAGC	2 cut(s)	40, 802
LweI	GCATC	2 cut(s)	591, 807
MaeI	CTAG	5 cut(s)	212, 320, 591, 998, 1016
MaeIII	GTNAC	3 cut(s)	140, 314, 709
MalI	GATC	2 cut(s)	77, 1043
MboI	GATC	2 cut(s)	75, 1041
MboII	GAAGA	5 cut(s)	217, 278, 546, 851, 1087
MflI	RGATCY	1 cut(s)	1041
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	5 cut(s)	33, 270, 310, 489, 629
MmeI	TCCRAC	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	1068
MseI	TTAA	3 cut(s)	171, 903, 1061
MslI	CAYNNNNRTG	4 cut(s)	47, 191, 333, 623
MspA1I	CMGCKG	1 cut(s)	793
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	2 cut(s)	107, 358
Mva1269I	GAATGC	1 cut(s)	1066
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	75, 1041
NlaIII	CATG	5 cut(s)	52, 157, 209, 332, 628
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	1068
PaeR7I	CTCGAG	1 cut(s)	849
PceI	AGGCCT	1 cut(s)	1023
PctI	GAATGC	1 cut(s)	1066
PfeI	GAWTC	2 cut(s)	518, 731
PflMI	CCANNNNNTGG	1 cut(s)	1097
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	55, 792
PshBI	ATTAAT	1 cut(s)	1061
PspN4I	GGNNCC	1 cut(s)	105
PspXI	VCTCGAGB	1 cut(s)	849
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	1041
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	4 cut(s)	47, 191, 333, 623
SaqAI	TTAA	3 cut(s)	171, 903, 1061
SatI	GCNGC	2 cut(s)	54, 791
Sau3AI	GATC	2 cut(s)	75, 1041
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	591, 807
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	849
SlaI	CTCGAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	4 cut(s)	47, 191, 333, 623
SmlI	CTYRAG	7 cut(s)	252, 512, 672, 743, 849, 902, 941
SmoI	CTYRAG	7 cut(s)	252, 512, 672, 743, 849, 902, 941
Sse9I	AATT	5 cut(s)	33, 270, 310, 489, 629
SseBI	AGGCCT	1 cut(s)	1023
SsiI	CCGC	3 cut(s)	196, 793, 1115
SspMI	CTAG	5 cut(s)	212, 320, 591, 998, 1016
StuI	AGGCCT	1 cut(s)	1023
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	2 cut(s)	60, 168
TaqI	TCGA	4 cut(s)	475, 532, 850, 1034
TasI	AATT	5 cut(s)	33, 270, 310, 489, 629
TfiI	GAWTC	2 cut(s)	518, 731
Tru1I	TTAA	3 cut(s)	171, 903, 1061
Tru9I	TTAA	3 cut(s)	171, 903, 1061
TscAI	CASTG	4 cut(s)	63, 487, 643, 1098
TseI	GCWGC	2 cut(s)	53, 790
TspDTI	ATGAA	2 cut(s)	539, 641
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	4 cut(s)	63, 487, 643, 1098
Van91I	CCANNNNNTGG	1 cut(s)	1097
Vha464I	CTTAAG	1 cut(s)	902
VneI	GTGCAC	1 cut(s)	483
VspI	ATTAAT	1 cut(s)	1061
XapI	RAATTY	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	849
XmiI	GTMKAC	1 cut(s)	1087
XspI	CTAG	5 cut(s)	212, 320, 591, 998, 1016
Zsp2I	ATGCAT	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.