MD10G1008700.v1.1

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
1235966 .. 1250637
14672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1008700.v1.1.491

Sequence Viewer

Length: 1791 bp
ATGGCGAGCCCTCTGACGCCATCCCACGTTGTCATCGCCTATGACGCCACCAAGGACCGCGGCGTGCATGAGCTTACACTCGCAGTTGACAGTCTCCAGAAGAGGGGTGACGTTTTGCATTCAGGGGATACCATCATTATGCTTGGAGTTTTGCACAAGGTAGTCCACCCCATGGGCTTTCACATAAAACCATGCGCAGATTTTTTGGAAACCAGCATTCGTGCAGTGGAGGAAGAAGTTACAAAGAAAGTTGACATGTATGTTAGCATGCTTCTTGAAAGTGCGAGAAAGTGTGAAGATCAAGGGGTCAGCATTGAAGTCAAAGTTACTGCTGGTTTTCCCGTTAAGCAGGTTATTTTGCAAGAGATTATGGCCTGCAATGCAGCTTGGGTTATACTTGATAGGCACCTTAGACGGGATATGAGGTTCTACCTTAAGAAGATACCATGCAAGGTTGCAATAATACAAGATAGTTTGGCTGTGGATGTTGTAAGACCTCATACAACGGATGACACTGATACCATGGAACACAAATTGTTTTTTTCATTGTCCAAGCCTGTTCCACTATCCAATTATCAATCTAACAGAAACAATGAACAGCCACTCAGTGATTCACCTGAAAGTTCTGATATTCAGAAAACCTATTTGACTTCACCTACAGTTAAGTTACGAGACTATGGTTCTTTATTGAATCTAGGGTCTTCCCCTACTCAAGAAAATTCAGGTGTAAAAACCAAAGCAGACGATAAACACTCCATAGTTCCTCAAAAAATCCAGAAGCAAAATAACGCCTTCCGAGGAAGATGCTCAGATGCCCCAATTCTGTGTTCCATATGTGGAACACGGACTGAAATGTATGTCAAGAATTCTATGACATTCAGCTACTCAGAGATACAGCTTGCAACAAATGATTTTTCCAAGGAAAATTTATTGGGAGAAGGCGGATATGGTCATGTGTATAAAGGTGAGTTTAAGGACGGACAGCAGATTGCAGCAAAGGTGCAGAAAGAAGCAAGTACACAAGAATTTACAGAATTTCACTCTGAGGTCTATGTCTTGAGTTTTGCACGCCATAAGAACATTGTCATGCTGTTGGGTTATTGTTGCAAGGAGAACCTAAATATATTGGTTTATGAATATATTTGCCACAAGTCTCTTGAATGGCACTTATTTGATGAAAAGGCAGCAGTTCTTGAGTGGCACCAAAGACAGGAAATCGCCATTGGAACTGCGAAGGGATTGCGTTTCCTCCACGAAGAATGTCGTGGAAGTCCTATAATTCACCGAGACACGCGACCAAGCAATATACTGCTAACACATGATTACGTTCCAATGTTAGGTGATTTTGGCTTCGCCAAATGGAAGACGGCGAGTAATGACACTGACCAGACAAGGATAATTGGCACACTAGGCTACCTTGCTCCAGAGTATGCAGAGAACGGTATTGTTTCTGTACGGACAGATGTATATGCCTTTGGCATGGTTCTGTTACAACTCGTAACTGGCCGCAAGATTGTTGATTCAAACGGAGAAGGGCAAGCTCAATCCCTACGGGAGTGGGCAGAACCAATAATCCAGAGGCTGGCACTACATGAACTCATTGATCGTCGTCTAGGAGATTCATATGACACATATGAAGTGTACCTCATGGCTAAAGCCGCATTCTTATGTGTACAAAGAAATCCTGAAATGCGTCCATCAATGCAAGAGGTTGTCCGCGTTCTTGAAGGTGAAAATGACAATTACCACCACCTAGGAGAGCACTTTGCACCTCAATATCTCACAAAGTGA

Protein Analysis

597

Amino Acids

67.44

Weight (kDa)

6.16

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 306 - 572 3.6e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 308 - 575 1.5e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 340
AccB1I GGYRCC 2 cut(s) 405, 1200
AccB7I CCANNNNNTGG 2 cut(s) 172, 1582
AccII CGCG 3 cut(s) 60, 1294, 1719
AciI CCGC 6 cut(s) 58, 60, 942, 1507, 1659, 1717
AcoI YGGCCR 1 cut(s) 1504
AcsI RAATTY 5 cut(s) 718, 865, 925, 1025, 1034
AcyI GRCGYC 2 cut(s) 17, 45
AdeI CACNNNGTG 2 cut(s) 608, 1788
AfaI GTAC 4 cut(s) 1018, 1455, 1643, 1674
AfiI CCNNNNNNNGG 6 cut(s) 103, 172, 415, 1210, 1337, 1582
AflII CTTAAG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 6 cut(s) 278, 317, 691, 1160, 1524, 1727
AjuI GAANNNNNNNTTGG 4 cut(s) 811, 843, 1206, 1238
AloI GAACNNNNNNTCC 4 cut(s) 410, 442, 1557, 1589
AluBI AGCT 5 cut(s) 73, 386, 882, 898, 1541
AluI AGCT 5 cut(s) 73, 386, 882, 898, 1541
Alw21I GWGCWC 1 cut(s) 1764
Alw26I GTCTC 4 cut(s) 98, 666, 1158, 1281
AlwNI CAGNNNCTG 1 cut(s) 1582
AoxI GGCC 2 cut(s) 372, 1504
ApeKI GCWGC 3 cut(s) 383, 992, 1184
ApoI RAATTY 5 cut(s) 718, 865, 925, 1025, 1034
AspA2I CCTAGG 1 cut(s) 1753
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 7 cut(s) 119, 606, 645, 977, 1274, 1352, 1742
AvaII GGWCC 1 cut(s) 55
AvrII CCTAGG 1 cut(s) 1753
BanI GGYRCC 2 cut(s) 405, 1200
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 693, 1370
Bbv12I GWGCWC 1 cut(s) 1764
BbvI GCAGC 3 cut(s) 395, 1004, 1196
BccI CCATC 3 cut(s) 28, 140, 1705
BceAI ACGGC 1 cut(s) 1383
BcgI CGANNNNNNTGC 4 cut(s) 786, 820, 1222, 1256
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 4 cut(s) 98, 666, 1158, 1281
BfaI CTAG 4 cut(s) 695, 1409, 1613, 1754
BfmI CTRYAG 1 cut(s) 657
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 340
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 6 cut(s) 61, 384, 993, 1185, 1507, 1659
BlnI CCTAGG 1 cut(s) 1753
BlsI GCNGC 6 cut(s) 62, 385, 994, 1186, 1508, 1660
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 407, 1202
BmsI GCATC 2 cut(s) 794, 802
BpiI GAAGAC 2 cut(s) 693, 1370
BpmI CTGGAG 2 cut(s) 80, 1407
BpuEI CTTGAG 3 cut(s) 696, 1078, 1214
BsaHI GRCGYC 2 cut(s) 17, 45
BsaJI CCNNGG 7 cut(s) 51, 58, 171, 522, 796, 918, 1753
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 172, 415, 1210, 1337, 1582
Bse1I ACTGG 1 cut(s) 1507
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 7 cut(s) 51, 58, 171, 522, 796, 918, 1753
BseGI GGATG 3 cut(s) 20, 490, 514
BseLI CCNNNNNNNGG 6 cut(s) 103, 172, 415, 1210, 1337, 1582
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 4 cut(s) 619, 822, 900, 1035
BseNI ACTGG 1 cut(s) 1507
BseXI GCAGC 3 cut(s) 395, 1004, 1196
BsgI GTGCAG 2 cut(s) 243, 1022
Bsh1236I CGCG 3 cut(s) 60, 1294, 1719
BshFI GGCC 2 cut(s) 374, 1506
BshNI GGYRCC 2 cut(s) 405, 1200
BsiHKAI GWGCWC 1 cut(s) 1764
BslI CCNNNNNNNGG 6 cut(s) 103, 172, 415, 1210, 1337, 1582
BsmAI GTCTC 4 cut(s) 98, 666, 1158, 1281
BsmI GAATGC 3 cut(s) 118, 216, 1661
BsnI GGCC 2 cut(s) 374, 1506
Bsp1286I GDGCHC 2 cut(s) 11, 1764
Bsp1407I TGTACA 1 cut(s) 1672
Bsp143I GATC 2 cut(s) 298, 1603
Bsp19I CCATGG 2 cut(s) 171, 522
BspACI CCGC 6 cut(s) 58, 60, 942, 1507, 1659, 1717
BspANI GGCC 2 cut(s) 374, 1506
BspCNI CTCAG 4 cut(s) 618, 821, 899, 1036
BspFNI CGCG 3 cut(s) 60, 1294, 1719
BspLI GGNNCC 2 cut(s) 407, 1202
BspMI ACCTGC 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 405, 1200
BspTI CTTAAG 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 385
BsrGI TGTACA 1 cut(s) 1672
BsrI ACTGG 1 cut(s) 1507
BssECI CCNNGG 7 cut(s) 51, 58, 171, 522, 796, 918, 1753
BssMI GATC 2 cut(s) 298, 1603
BssNI GRCGYC 2 cut(s) 17, 45
BssT1I CCWWGG 5 cut(s) 51, 171, 522, 918, 1753
Bst4CI ACNGT 3 cut(s) 92, 661, 1442
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 17, 45
BstAFI CTTAAG 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 1672
BstC8I GCNNGC 8 cut(s) 7, 65, 269, 376, 900, 1069, 1539, 1584
BstDEI CTNAG 5 cut(s) 410, 605, 808, 886, 1044
BstDSI CCRYGG 3 cut(s) 58, 171, 522
BstF5I GGATG 3 cut(s) 20, 490, 514
BstFNI CGCG 3 cut(s) 60, 1294, 1719
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 301, 1606
BstMAI GTCTC 4 cut(s) 98, 666, 1158, 1281
BstMBI GATC 2 cut(s) 298, 1603
BstMWI GCNNNNNNNGC 4 cut(s) 44, 380, 1410, 1658
BstNSI RCATGY 2 cut(s) 259, 271
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 3 cut(s) 60, 1294, 1719
BstV1I GCAGC 3 cut(s) 395, 1004, 1196
BstV2I GAAGAC 2 cut(s) 693, 1370
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 374, 1506
BtgI CCRYGG 3 cut(s) 58, 171, 522
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 3 cut(s) 20, 490, 514
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 231, 513, 613, 1380
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 8 cut(s) 7, 65, 269, 376, 900, 1069, 1539, 1584
CaiI CAGNNNCTG 1 cut(s) 1582
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 3 cut(s) 25, 53, 1682
Csp6I GTAC 4 cut(s) 1017, 1454, 1642, 1673
CviQI GTAC 4 cut(s) 1017, 1454, 1642, 1673
DdeI CTNAG 5 cut(s) 410, 605, 808, 886, 1044
DpnI GATC 2 cut(s) 300, 1605
DpnII GATC 2 cut(s) 298, 1603
DraIII CACNNNGTG 2 cut(s) 608, 1788
EaeI YGGCCR 1 cut(s) 1504
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 957
Eco130I CCWWGG 5 cut(s) 51, 171, 522, 918, 1753
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 865
EcoT14I CCWWGG 5 cut(s) 51, 171, 522, 918, 1753
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 5 cut(s) 51, 171, 522, 918, 1753
FauNDI CATATG 3 cut(s) 833, 1624, 1633
Fnu4HI GCNGC 6 cut(s) 61, 384, 993, 1185, 1507, 1659
FokI GGATG 3 cut(s) 7, 497, 521
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 6 cut(s) 61, 384, 993, 1185, 1507, 1659
FspBI CTAG 4 cut(s) 695, 1409, 1613, 1754
FspI TGCGCA 1 cut(s) 196
GlaI GCGC 1 cut(s) 196
GluI GCNGC 6 cut(s) 61, 384, 993, 1185, 1507, 1659
GsuI CTGGAG 2 cut(s) 80, 1407
HaeIII GGCC 2 cut(s) 374, 1506
HgaI GACGC 3 cut(s) 25, 53, 1682
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 2 cut(s) 17, 45
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 88, 253
HindII GTYRAC 2 cut(s) 88, 253
HinfI GANTC 4 cut(s) 611, 691, 1520, 1619
HphI GGTGA 7 cut(s) 119, 606, 645, 977, 1274, 1352, 1742
Hpy166II GTNNAC 6 cut(s) 88, 166, 253, 1019, 1642, 1673
Hpy188I TCNGA 7 cut(s) 15, 628, 636, 797, 811, 889, 1045
Hpy8I GTNNAC 6 cut(s) 88, 166, 253, 1019, 1642, 1673
Hpy99I CGWCG 1 cut(s) 1611
HpyAV CCTTC 5 cut(s) 802, 932, 1228, 1526, 1721
HpyCH4III ACNGT 3 cut(s) 92, 661, 1442
HpyCH4IV ACGT 3 cut(s) 27, 111, 1326
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 380, 1410, 1658
HpyF3I CTNAG 5 cut(s) 410, 605, 808, 886, 1044
HpySE526I ACGT 3 cut(s) 27, 111, 1326
Hsp92I GRCGYC 2 cut(s) 17, 45
HspAI GCGC 1 cut(s) 195
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 2 cut(s) 298, 1603
LmnI GCTCC 1 cut(s) 1426
Lsp1109I GCAGC 3 cut(s) 395, 1004, 1196
LweI GCATC 2 cut(s) 794, 802
MaeI CTAG 4 cut(s) 695, 1409, 1613, 1754
MaeII ACGT 3 cut(s) 27, 111, 1326
MaeIII GTNAC 6 cut(s) 107, 238, 325, 666, 1488, 1498
MalI GATC 2 cut(s) 300, 1605
MboI GATC 2 cut(s) 298, 1603
MboII GAAGA 8 cut(s) 112, 245, 308, 451, 693, 813, 1268, 1375
MhlI GDGCHC 2 cut(s) 11, 1764
MseI TTAA 4 cut(s) 345, 435, 663, 972
MslI CAYNNNNRTG 3 cut(s) 137, 1085, 1666
MspA1I CMGCKG 1 cut(s) 60
MspCI CTTAAG 1 cut(s) 434
Mva1269I GAATGC 3 cut(s) 118, 216, 1661
MvnI CGCG 3 cut(s) 60, 1294, 1719
MwoI GCNNNNNNNGC 4 cut(s) 44, 380, 1410, 1658
NcoI CCATGG 2 cut(s) 171, 522
NdeI CATATG 3 cut(s) 833, 1624, 1633
NdeII GATC 2 cut(s) 298, 1603
NlaIV GGNNCC 2 cut(s) 407, 1202
NmuCI GTSAC 1 cut(s) 107
NsbI TGCGCA 1 cut(s) 196
NspI RCATGY 2 cut(s) 259, 271
PaeI GCATGC 1 cut(s) 271
PciI ACATGT 1 cut(s) 255
PctI GAATGC 3 cut(s) 118, 216, 1661
PfeI GAWTC 4 cut(s) 611, 691, 1520, 1619
PflMI CCANNNNNTGG 2 cut(s) 172, 1582
PkrI GCNGC 6 cut(s) 62, 385, 994, 1186, 1508, 1660
PscI ACATGT 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 407, 1202
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 1582
RsaI GTAC 4 cut(s) 1018, 1455, 1643, 1674
RsaNI GTAC 4 cut(s) 1017, 1454, 1642, 1673
RseI CAYNNNNRTG 3 cut(s) 137, 1085, 1666
SacII CCGCGG 1 cut(s) 61
SaqAI TTAA 4 cut(s) 345, 435, 663, 972
SatI GCNGC 6 cut(s) 61, 384, 993, 1185, 1507, 1659
Sau3AI GATC 2 cut(s) 298, 1603
Sau96I GGNCC 1 cut(s) 55
SduI GDGCHC 2 cut(s) 11, 1764
SfaNI GCATC 2 cut(s) 794, 802
SfcI CTRYAG 1 cut(s) 657
Sfr303I CCGCGG 1 cut(s) 61
SgrBI CCGCGG 1 cut(s) 61
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 3 cut(s) 137, 1085, 1666
SmlI CTYRAG 4 cut(s) 434, 711, 1057, 1193
SmoI CTYRAG 4 cut(s) 434, 711, 1057, 1193
SphI GCATGC 1 cut(s) 271
SsiI CCGC 6 cut(s) 58, 60, 942, 1507, 1659, 1717
SspMI CTAG 4 cut(s) 695, 1409, 1613, 1754
StyI CCWWGG 5 cut(s) 51, 171, 522, 918, 1753
TaaI ACNGT 3 cut(s) 92, 661, 1442
TaiI ACGT 3 cut(s) 30, 114, 1329
TatI WGTACW 2 cut(s) 1016, 1672
TauI GCSGC 3 cut(s) 63, 1509, 1661
TfiI GAWTC 4 cut(s) 611, 691, 1520, 1619
Tru1I TTAA 4 cut(s) 345, 435, 663, 972
Tru9I TTAA 4 cut(s) 345, 435, 663, 972
TscAI CASTG 4 cut(s) 231, 520, 613, 1387
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 3 cut(s) 383, 992, 1184
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 7 cut(s) 534, 609, 1149, 1191, 1608, 1611, 1650
TspGWI ACGGA 5 cut(s) 521, 859, 993, 1471, 1542
TspRI CASTG 4 cut(s) 231, 520, 613, 1387
Van91I CCANNNNNTGG 2 cut(s) 172, 1582
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 5 cut(s) 718, 865, 925, 1025, 1034
XceI RCATGY 2 cut(s) 259, 271
XmaJI CCTAGG 1 cut(s) 1753
XspI CTAG 4 cut(s) 695, 1409, 1613, 1754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.