Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

15489167 .. 15489981

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCGGTTTCCGACGCTGCCCGTGACGTTATTCTCAGGTTGGATGGTGATTACCTCACACATGGTGTCTTGTGCCTCTCGTATCATCTTCTCGAACTGCGTCCAGACGGAGTTGGCGACGACGACTCACGGATGAAAGTTTTGAGCTTTTCTGTCTCCGGCATCTCTTTCTCGATGACGGCGCATCACGGAGTAAGGGAGGGGGCGTTCGTCATCGTCGGTGACAAGTCATGTGACCAGACACTAGATAAGACTACTTCAAATTTAGACATGGAATTAGCTACCGCAAGGGCAACACAAGAGTCTATAAGTAGTGGCTTCTTCATCAGGAACTCATGTATAAAGTCCACAAATCAAAAGGCTGAGCAGAGTAAGACAATGGTTCAAGAGAGATATCGTGACATTAAAAAGTTAGATTTTGCAAAGAAGCATATAACAAACCACCATAGCTGCTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

6.64

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps53_N	PF04100	112 - 147	2.5e-07	Vps53, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	261, 386
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	147, 281, 450
AluI	AGCT	3 cut(s)	147, 281, 450
Alw26I	GTCTC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	17, 450
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	59, 233
BbvI	GCAGC	2 cut(s)	4, 437
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	18, 451
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	2 cut(s)	19, 452
BmsI	GCATC	2 cut(s)	171, 193
Bpu1102I	GCTNAGC	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse118I	RCCGGY	1 cut(s)	4
BseGI	GGATG	2 cut(s)	49, 138
BseMII	CTCAG	2 cut(s)	49, 354
BseXI	GCAGC	2 cut(s)	4, 437
BsiSI	CCGG	2 cut(s)	5, 159
BsmAI	GTCTC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	48, 355
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BstDEI	CTNAG	2 cut(s)	35, 363
BstF5I	GGATG	2 cut(s)	49, 138
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	4, 437
BtsCI	GGATG	2 cut(s)	49, 138
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	4
CseI	GACGC	2 cut(s)	23, 89
CviAII	CATG	4 cut(s)	62, 231, 271, 336
CviJI	RGCY	5 cut(s)	147, 281, 318, 362, 450
CviKI_1	RGCY	5 cut(s)	147, 281, 318, 362, 450
DdeI	CTNAG	2 cut(s)	35, 363
DraIII	CACNNNGTG	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	395
FaeI	CATG	4 cut(s)	65, 234, 274, 339
FatI	CATG	4 cut(s)	61, 230, 270, 335
Fnu4HI	GCNGC	2 cut(s)	18, 451
FokI	GGATG	2 cut(s)	56, 145
Fsp4HI	GCNGC	2 cut(s)	18, 451
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	18, 451
HapII	CCGG	2 cut(s)	5, 159
HgaI	GACGC	2 cut(s)	23, 89
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	65, 234, 274, 339
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	125, 302
HpaII	CCGG	2 cut(s)	5, 159
HphI	GGTGA	2 cut(s)	59, 233
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	6 cut(s)	92, 104, 172, 328, 386, 398
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	4 cut(s)	17, 122, 125, 221
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	35, 363
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	65, 234, 274, 339
HspAI	GCGC	1 cut(s)	182
LpnPI	CCDG	6 cut(s)	18, 22, 117, 172, 251, 313
Lsp1109I	GCAGC	2 cut(s)	4, 437
LweI	GCATC	2 cut(s)	171, 193
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	23, 221, 233, 398
MboII	GAAGA	3 cut(s)	80, 313, 447
MluCI	AATT	2 cut(s)	262, 275
MlyI	GAGTC	2 cut(s)	119, 311
MmeI	TCCRAC	2 cut(s)	21, 36
MnlI	CCTC	3 cut(s)	65, 86, 193
MseI	TTAA	1 cut(s)	405
MspI	CCGG	2 cut(s)	5, 159
NlaIII	CATG	4 cut(s)	65, 234, 274, 339
NmuCI	GTSAC	4 cut(s)	23, 221, 233, 398
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	19, 452
PleI	GAGTC	2 cut(s)	119, 310
PpsI	GAGTC	2 cut(s)	119, 310
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	18, 451
SchI	GAGTC	2 cut(s)	119, 311
SetI	ASST	6 cut(s)	30, 41, 57, 149, 283, 452
SfaNI	GCATC	2 cut(s)	171, 193
Sse9I	AATT	2 cut(s)	262, 275
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	245
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	93, 173
TasI	AATT	2 cut(s)	262, 275
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	4 cut(s)	23, 221, 233, 398
TseI	GCWGC	2 cut(s)	17, 450
Tsp45I	GTSAC	4 cut(s)	23, 221, 233, 398
TspDTI	ATGAA	3 cut(s)	149, 313, 447
TspGWI	ACGGA	3 cut(s)	123, 145, 204
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.