Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

30795960 .. 30799991

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTTTGGTACTCCAACTACTAGAATAAAGCTTTTTAGTGTAATTTTTCGTCTTCCAGGCATACAAACGAAAGGAGACATCATTCAATATTCTACTTTTCAAATTGTCCAGAAGCAAAATAAAAGTTTCTCACGGCAGAGAACCTCAGATGGGCCAATTCTTTGTTCCATATGTGGAACGAGGACTGAAATGTATATCAAAGATTCTATGATATTTAGTTACTTAGAGATACAGATTGCAACGAAGGATTTTTCAAATGAAAACTTAATAGGTGAAGGCGGATATGGTCATGTATATAAAGGTAAGCTCAAGGCCGGACAGGAGATTGCAGCAAAGGTGCGGAAAGAGGCAAGTAAACAGGGATTCAAAGAATTTCACTCTGAGGTCTATGTCTTGAGTTTTGCACGCCACAAAAACATTGTAATGCTGTTGGGTTATTGTTGCAAGGAAAACCAAAATATCTTGGTGTATGAGTATATTTGTAACAAATCTCTCGAGTGGCACTTATTTGATGATAAAGCAGAAGTTCTTGAATGGCACCGAAGGCATGCTATCGCCCTTGGAACTGCAAAAGGATTACGTTTCCTACATGAAGAATGTCGCGGAGGTCCTGTCATTCATCGAGACATGCGACCAAGCAATATACTGCTCACACACGATTATGTTCCAATGTTGGCAGCTACTAATCTGAAGAAGGACCAGTTTCAATCCAAACCATCTGATGTATCCGAAGAAGCAGCTCTACATACACATTTCGTATGGAGGAGGTTAGGTGATTTTGGCCTAGCTAAATGGAAGACCAATGATGATCTTGAAAGTACAAGGATACTTGGGACATTAGGCTACCTTGCTCCAGAGTATGCAGAGAATGGTATTGTTTCTGTAAGAACAGATGTATATGCATTTGGCATGATTCTGTTACAACTCATATCTGGGCGCAAGATTGTAGATGGAAATGGAGAAGAACCAACTGCATCCCTGCGGGAGTGGGCAGAACCATTGATCCATAGGCTAGCACTACATGAACTCATTGATTGTCGTCTTGGAGATTCATATGATACATACGAAGTGTACCTTATGGCTAAAGCCGCATATGTTTGTGTGCAAGAAAGCGCTGAAAAGCGTCCATCAATGGGAGAGGTTGTCCGTATACTCGAAGGAGAAAATGACCATTTCCACCACCTAGGAGAGCACTTTGTACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

401

Amino Acids

45.76

Weight (kDa)

6.79

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 323	4.4e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 384	6.2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	1150
AccII	CGCG	1 cut(s)	603
AciI	CCGC	5 cut(s)	279, 340, 603, 982, 1089
AclWI	GGATC	1 cut(s)	997
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	4 cut(s)	10, 820, 1073, 1200
AfeI	AGCGCT	1 cut(s)	1114
AfiI	CCNNNNNNNGG	2 cut(s)	150, 1133
AgsI	TTSAA	7 cut(s)	86, 101, 255, 367, 533, 707, 815
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AloI	GAACNNNNNNTCC	2 cut(s)	987, 1019
AluBI	AGCT	5 cut(s)	31, 307, 680, 740, 788
AluI	AGCT	5 cut(s)	31, 307, 680, 740, 788
Alw21I	GWGCWC	1 cut(s)	1194
Alw26I	GTCTC	2 cut(s)	69, 618
AlwI	GGATC	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	494
Aor51HI	AGCGCT	1 cut(s)	1114
AoxI	GGCC	3 cut(s)	152, 312, 781
ApeKI	GCWGC	3 cut(s)	329, 677, 737
ApoI	RAATTY	1 cut(s)	371
AspA2I	CCTAGG	1 cut(s)	1183
AspLEI	GCGC	2 cut(s)	939, 1115
AspS9I	GGNCC	3 cut(s)	152, 608, 697
AsuHPI	GGTGA	2 cut(s)	284, 785
AsuNHI	GCTAGC	1 cut(s)	1012
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	608, 697
AvrII	CCTAGG	1 cut(s)	1183
BanI	GGYRCC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BbsI	GAAGAC	2 cut(s)	44, 803
Bbv12I	GWGCWC	1 cut(s)	1194
BbvI	GCAGC	3 cut(s)	341, 689, 749
BccI	CCATC	4 cut(s)	143, 724, 944, 1135
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	2 cut(s)	736, 819
BcoDI	GTCTC	2 cut(s)	69, 618
BfaI	CTAG	4 cut(s)	21, 785, 1013, 1184
BfoI	RGCGCY	1 cut(s)	1116
BfuI	GTATCC	2 cut(s)	736, 819
BisI	GCNGC	4 cut(s)	330, 678, 738, 1089
BlnI	CCTAGG	1 cut(s)	1183
BlsI	GCNGC	4 cut(s)	331, 679, 739, 1090
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	2 cut(s)	608, 697
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	152, 608, 697
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	983
BmtI	GCTAGC	1 cut(s)	1016
BpiI	GAAGAC	2 cut(s)	44, 803
BpmI	CTGGAG	1 cut(s)	837
BpuEI	CTTGAG	2 cut(s)	293, 415
BsaJI	CCNNGG	2 cut(s)	559, 1183
BsaXI	ACNNNNNCTCC	6 cut(s)	597, 627, 757, 787, 1128, 1158
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 1133
Bse1I	ACTGG	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	559, 1183
BseGI	GGATG	1 cut(s)	974
BseLI	CCNNNNNNNGG	2 cut(s)	150, 1133
BseMII	CTCAG	2 cut(s)	159, 372
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	778
BseXI	GCAGC	3 cut(s)	341, 689, 749
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	154, 314, 783
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	1194
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	2 cut(s)	150, 1133
BsmAI	GTCTC	2 cut(s)	69, 618
BsmFI	GGGAC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	154, 314, 783
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	1194
Bsp143I	GATC	2 cut(s)	808, 1002
BspACI	CCGC	5 cut(s)	279, 340, 603, 982, 1089
BspANI	GGCC	3 cut(s)	154, 314, 783
BspCNI	CTCAG	2 cut(s)	158, 373
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	539
BspOI	GCTAGC	1 cut(s)	1016
BspPI	GGATC	1 cut(s)	997
BspT107I	GGYRCC	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	559, 1183
BssMI	GATC	2 cut(s)	808, 1002
BssNAI	GTATAC	1 cut(s)	1151
BssT1I	CCWWGG	2 cut(s)	559, 1183
Bst1107I	GTATAC	1 cut(s)	1151
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	406, 549, 1014
BstDEI	CTNAG	4 cut(s)	145, 223, 381, 1203
BstF5I	GGATG	1 cut(s)	974
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	1116
BstHHI	GCGC	2 cut(s)	939, 1115
BstKTI	GATC	2 cut(s)	811, 1005
BstMAI	GTCTC	2 cut(s)	69, 618
BstMBI	GATC	2 cut(s)	808, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 1088
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	551, 631
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	341, 689, 749
BstV2I	GAAGAC	2 cut(s)	44, 803
BstZ17I	GTATAC	1 cut(s)	1151
BsuI	GTATCC	2 cut(s)	736, 819
BsuRI	GGCC	3 cut(s)	154, 314, 783
BtsCI	GGATG	1 cut(s)	974
Cac8I	GCNNGC	3 cut(s)	406, 549, 1014
CfoI	GCGC	2 cut(s)	939, 1115
Cfr13I	GGNCC	3 cut(s)	152, 608, 697
CseI	GACGC	1 cut(s)	1112
Csp6I	GTAC	4 cut(s)	9, 819, 1072, 1199
CviAII	CATG	6 cut(s)	290, 548, 590, 628, 910, 1022
CviQI	GTAC	4 cut(s)	9, 819, 1072, 1199
DdeI	CTNAG	4 cut(s)	145, 223, 381, 1203
DpnI	GATC	2 cut(s)	810, 1004
DpnII	GATC	2 cut(s)	808, 1002
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	559, 1183
Eco47I	GGWCC	2 cut(s)	608, 697
Eco47III	AGCGCT	1 cut(s)	1114
Eco57I	CTGAAG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	559, 1183
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	2 cut(s)	559, 1183
FaeI	CATG	6 cut(s)	293, 551, 593, 631, 913, 1025
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	6 cut(s)	289, 547, 589, 627, 909, 1021
FauI	CCCGC	1 cut(s)	975
FauNDI	CATATG	3 cut(s)	170, 1054, 1093
FblI	GTMKAC	1 cut(s)	1150
Fnu4HI	GCNGC	4 cut(s)	330, 678, 738, 1089
FokI	GGATG	1 cut(s)	961
Fsp4HI	GCNGC	4 cut(s)	330, 678, 738, 1089
FspBI	CTAG	4 cut(s)	21, 785, 1013, 1184
GlaI	GCGC	2 cut(s)	938, 1114
GluI	GCNGC	4 cut(s)	330, 678, 738, 1089
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	1116
HaeIII	GGCC	3 cut(s)	154, 314, 783
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	1112
HhaI	GCGC	2 cut(s)	939, 1115
Hin1II	CATG	6 cut(s)	293, 551, 593, 631, 913, 1025
Hin6I	GCGC	2 cut(s)	937, 1113
HinP1I	GCGC	2 cut(s)	937, 1113
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	203, 363, 913, 1049
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	284, 785
Hpy166II	GTNNAC	3 cut(s)	356, 1072, 1151
Hpy188I	TCNGA	5 cut(s)	148, 382, 690, 721, 730
Hpy188III	TCNNGA	7 cut(s)	109, 394, 494, 530, 623, 812, 854
Hpy8I	GTNNAC	3 cut(s)	356, 1072, 1151
HpyAV	CCTTC	5 cut(s)	238, 269, 537, 688, 1151
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	9 cut(s)	239, 329, 404, 444, 569, 863, 902, 974, 1105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 1088
HpyF3I	CTNAG	4 cut(s)	145, 223, 381, 1203
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	6 cut(s)	293, 551, 593, 631, 913, 1025
HspAI	GCGC	2 cut(s)	937, 1113
Kzo9I	GATC	2 cut(s)	808, 1002
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	3 cut(s)	341, 689, 749
LweI	GCATC	1 cut(s)	983
MaeI	CTAG	4 cut(s)	21, 785, 1013, 1184
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	3 cut(s)	218, 482, 918
MalI	GATC	2 cut(s)	810, 1004
MboI	GATC	2 cut(s)	808, 1002
MboII	GAAGA	6 cut(s)	44, 605, 703, 743, 808, 974
MhlI	GDGCHC	1 cut(s)	1194
MluCI	AATT	4 cut(s)	42, 102, 156, 371
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	8 cut(s)	154, 174, 340, 376, 599, 756, 759, 1132
Mph1103I	ATGCAT	1 cut(s)	904
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	422, 660
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	544, 1088
NdeI	CATATG	3 cut(s)	170, 1054, 1093
NdeII	GATC	2 cut(s)	808, 1002
NheI	GCTAGC	1 cut(s)	1012
NlaIII	CATG	6 cut(s)	293, 551, 593, 631, 913, 1025
NlaIV	GGNNCC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	2 cut(s)	551, 631
PaeI	GCATGC	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PfeI	GAWTC	4 cut(s)	203, 363, 913, 1049
PkrI	GCNGC	4 cut(s)	331, 679, 739, 1090
PpuMI	RGGWCCY	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	3 cut(s)	152, 608, 697
PspPPI	RGGWCCY	1 cut(s)	608
RsaI	GTAC	4 cut(s)	10, 820, 1073, 1200
RsaNI	GTAC	4 cut(s)	9, 819, 1072, 1199
RseI	CAYNNNNRTG	2 cut(s)	422, 660
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	330, 678, 738, 1089
Sau3AI	GATC	2 cut(s)	808, 1002
Sau96I	GGNCC	3 cut(s)	152, 608, 697
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	1194
SfaNI	GCATC	1 cut(s)	983
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	608, 697
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	422, 660
SmlI	CTYRAG	3 cut(s)	308, 394, 494
SmoI	CTYRAG	3 cut(s)	308, 394, 494
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	4 cut(s)	42, 102, 156, 371
SsiI	CCGC	5 cut(s)	279, 340, 603, 982, 1089
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	4 cut(s)	21, 785, 1013, 1184
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	559, 1183
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	3 cut(s)	495, 622, 1155
TasI	AATT	4 cut(s)	42, 102, 156, 371
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	1 cut(s)	1091
TfiI	GAWTC	4 cut(s)	203, 363, 913, 1049
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseI	GCWGC	3 cut(s)	329, 677, 737
TspDTI	ATGAA	5 cut(s)	273, 606, 608, 1038, 1041
TspGWI	ACGGA	1 cut(s)	1136
VpaK11BI	GGWCC	2 cut(s)	608, 697
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	2 cut(s)	551, 631
XhoI	CTCGAG	1 cut(s)	494
XmaJI	CCTAGG	1 cut(s)	1183
XmiI	GTMKAC	1 cut(s)	1150
XspI	CTAG	4 cut(s)	21, 785, 1013, 1184
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.