Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

15524241 .. 15525792

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACTGATGCAAAGGGTATGAACATGTTCCAATTTGCTATTGAATGTCGTCAAGAGAAAATTTATAGCCTCATCTATGGGTTAAGTAAAGAAGACCGAAAAAAACTTATGGGAGTTTCTTTCGATGGCCTGAATAATACCCTTTTACATTTAGTGGGGAGGTTACCCCCACATGGAGAACTAGATCACATTCAAGATGCAGCTTTGCGGATGCAAAGAGAAGTACAATGGTTCAAGGAGGTCGAGTGTATTTTACCTAAAAGTTGTCATGATATTATGAATTTCACGGATAATATGACAGCACATGAACTATTCACGAAGAACCATAAACAATTGAAGCATGAGGGAGAAAAATCAATGAAAGGTACAGCAACTTCCTGTACTGTTGTAGCTGCCCTGATTGTAACCATCATGTTCGCTGCAGCATTTACAGTTCCGGGTGGAAACAGTGGAGAAACAGGCATCCCAGTACTTGTACATCAAAAGTGGTTTATGGTTTTTTTAGTTTCTGATGCTTTGTCTCTTTGTTTTTCAACAACTTCCGTAATCATATTTTTAGGAATACTCACATCACGTTATGCAGAAGTTGATTTCCTTGAATCTTTGCCCACAAAAATGATATTCGGCCTCCTAACCCTCTTTCTCGCTATCACCACCATGATGGTTGCTTTCTCTTCTGCCATTTATATTGTGCTTGAGAGAAAATCTGGGACCGGTATTCCAATTACTTTACTTGGTGCTGTTCCAGTCACCACTTTTGTAGTGATGCAATTTCGCCTGCTTAAAGAGATGGTAATTTCTACTTATGGAGTGGGATTATTTCAGAGGGAAGTCAAAGATTGGCGTTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

31.83

Weight (kDa)

7.69

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	118 - 231	2.2e-26	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	60, 280
AfaI	GTAC	5 cut(s)	225, 367, 382, 471, 477
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	6 cut(s)	44, 194, 235, 337, 534, 599
AluBI	AGCT	2 cut(s)	203, 392
AluI	AGCT	2 cut(s)	203, 392
Alw26I	GTCTC	1 cut(s)	525
AoxI	GGCC	2 cut(s)	127, 625
ApeKI	GCWGC	4 cut(s)	200, 392, 419, 422
ApoI	RAATTY	2 cut(s)	60, 280
AsiGI	ACCGGT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	711
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	643, 742
AvaII	GGWCC	1 cut(s)	711
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	212, 379, 406, 434
BccI	CCATC	4 cut(s)	119, 416, 655, 784
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	4 cut(s)	201, 393, 420, 423
BlsI	GCNGC	4 cut(s)	202, 394, 421, 424
BmcAI	AGTACT	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	5 cut(s)	187, 201, 471, 502, 756
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	467, 746
BseGI	GGATG	2 cut(s)	216, 462
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	467, 746
BseXI	GCAGC	4 cut(s)	212, 379, 406, 434
BshFI	GGCC	2 cut(s)	129, 627
BshTI	ACCGGT	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	437, 714
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	129, 627
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	129, 627
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	712
BspMAI	CTGCAG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	713
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	467, 746
BssAI	RCCGGY	1 cut(s)	713
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	385, 433, 449
Bst6I	CTCTTC	1 cut(s)	679
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	779
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	216, 462
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	212, 379, 406, 434
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	129, 627
BtsCI	GGATG	2 cut(s)	216, 462
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	779
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	711
Csp6I	GTAC	5 cut(s)	224, 366, 381, 470, 476
CspAI	ACCGGT	1 cut(s)	713
CviAII	CATG	7 cut(s)	25, 173, 269, 305, 341, 412, 658
CviJI	RGCY	5 cut(s)	69, 129, 203, 392, 627
CviKI_1	RGCY	5 cut(s)	69, 129, 203, 392, 627
CviQI	GTAC	5 cut(s)	224, 366, 381, 470, 476
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraI	TTTAAA	1 cut(s)	849
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	711
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
FaeI	CATG	7 cut(s)	28, 176, 272, 308, 344, 415, 661
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	7 cut(s)	24, 172, 268, 304, 340, 411, 657
Fnu4HI	GCNGC	4 cut(s)	201, 393, 420, 423
FokI	GGATG	2 cut(s)	223, 449
Fsp4HI	GCNGC	4 cut(s)	201, 393, 420, 423
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	4 cut(s)	201, 393, 420, 423
HaeIII	GGCC	2 cut(s)	129, 627
HapII	CCGG	2 cut(s)	437, 714
Hin1II	CATG	7 cut(s)	28, 176, 272, 308, 344, 415, 661
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	437, 714
HphI	GGTGA	2 cut(s)	643, 742
Hpy188I	TCNGA	2 cut(s)	511, 825
Hpy188III	TCNNGA	4 cut(s)	53, 194, 269, 316
HpyCH4III	ACNGT	3 cut(s)	385, 433, 449
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	6 cut(s)	11, 200, 214, 422, 581, 769
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	7 cut(s)	28, 176, 272, 308, 344, 415, 661
Kzo9I	GATC	1 cut(s)	184
Lsp1109I	GCAGC	4 cut(s)	212, 379, 406, 434
LweI	GCATC	5 cut(s)	187, 201, 471, 502, 756
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	3 cut(s)	162, 403, 748
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	3 cut(s)	104, 331, 666
MfeI	CAATTG	1 cut(s)	332
MluCI	AATT	7 cut(s)	32, 60, 280, 332, 723, 770, 795
MnlI	CCTC	7 cut(s)	80, 153, 232, 337, 638, 647, 819
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	3 cut(s)	83, 783, 848
MslI	CAYNNNNRTG	3 cut(s)	614, 656, 659
MspI	CCGG	2 cut(s)	437, 714
MspR9I	CCNGG	1 cut(s)	438
MssI	GTTTAAAC	1 cut(s)	849
MunI	CAATTG	1 cut(s)	332
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	7 cut(s)	28, 176, 272, 308, 344, 415, 661
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	4 cut(s)	202, 394, 421, 424
PmeI	GTTTAAAC	1 cut(s)	849
PscI	ACATGT	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	1 cut(s)	711
PstI	CTGCAG	1 cut(s)	424
RsaI	GTAC	5 cut(s)	225, 367, 382, 471, 477
RsaNI	GTAC	5 cut(s)	224, 366, 381, 470, 476
RseI	CAYNNNNRTG	3 cut(s)	614, 656, 659
SaqAI	TTAA	3 cut(s)	83, 783, 848
SatI	GCNGC	4 cut(s)	201, 393, 420, 423
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	711
ScaI	AGTACT	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	7 cut(s)	164, 205, 243, 259, 367, 394, 577
SfaNI	GCATC	5 cut(s)	187, 201, 471, 502, 756
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	3 cut(s)	614, 656, 659
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	7 cut(s)	32, 60, 280, 332, 723, 770, 795
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	385, 433, 449
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	123, 243
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	7 cut(s)	32, 60, 280, 332, 723, 770, 795
TatI	WGTACW	4 cut(s)	223, 380, 469, 475
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	3 cut(s)	83, 783, 848
Tru9I	TTAA	3 cut(s)	83, 783, 848
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	4 cut(s)	200, 392, 419, 422
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	35, 293, 321, 374
TspGWI	ACGGA	2 cut(s)	302, 532
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	2 cut(s)	60, 280
XceI	RCATGY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.