Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

663700 .. 665563

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGTATCTTCAGACTATCAGCTTATCACAGGCACCTTAGACGGGATTTGACGTTCTACCTTAAGCAGATACCGTGCAAGGTTGCAATAATTCAAGATAGCTTGGCTGTGGAAGTTGTGAGACCTCATATAACGGATGAAACTGAAACTATAGAACACAAATTGTTTTTTTCTTTGTCCAAGCCCGTTCCTCTATCCAACTATCAAGGTAACGGAAACAATGAACCACTCATCACTTGCAGAAGCGACCCTGTATCCATTGATTCACCAGAAAGCTCTGAGATTCTGCAAAAACACTTTGTGACTTCACCTACATTTAAGTTACGAGACGACAGTACTTTATTGAATCTAGGGTCTTCCTGTAAGCAAGAAAATTCAGGTGTTCAAACCAAAGCAGACAATAAACCATCCACTGTTCCTCAAAAAATCCAGAAGCAAAATAACGCCTTCCAAGAAAGATGCTCAGATGCCCCAATTCTGTGTTCCAGATGCGGAACAAGGACTGAAATGTATGTCAAAGATTCCATGACATTCAGCTACTCAGAGATACTGCTTGCAACAAATGATTTTTCCAAGGAAAACTTAATAGGAGAAGGTGGATATGGTCATGTGTATAAAGGTGAGCTTAAGGATGGACAGCAGATTGCAGCAAAAGTGCGAAAAGAAGCAAGTACACAAGGATTTAAGGAATTTCACTCTGAGGTTTATGTCTTGAGTTTTGCACGCCATAAGAACATTGTCATGCTGTTGGGTTATTGTTGCAAGGAGAACCTAAATATCTTGGTTTATGAATATATTTGCCACAATTCTCTTGAATGGCACTTATTTGGTAAACTTCTGTTAAAATTTTCCCCAGTACTTTTCTTTTTTCCTCCTGTTAGTTCTTATGTTGATACTATATGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

303

Amino Acids

34.38

Weight (kDa)

7.59

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	373, 689, 845
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	3 cut(s)	337, 673, 858
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflII	CTTAAG	2 cut(s)	62, 626
AgsI	TTSAA	4 cut(s)	95, 346, 386, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	23, 102, 276, 537, 625
AluI	AGCT	5 cut(s)	23, 102, 276, 537, 625
Alw26I	GTCTC	2 cut(s)	115, 321
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	3 cut(s)	373, 689, 845
AsuHPI	GGTGA	3 cut(s)	258, 300, 632
BanI	GGYRCC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	2 cut(s)	415, 626
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	115, 321
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	2 cut(s)	62, 626
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmcAI	AGTACT	2 cut(s)	337, 858
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	3 cut(s)	449, 457, 479
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	142, 407, 637
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	4 cut(s)	270, 477, 555, 690
BseNI	ACTGG	1 cut(s)	854
BseXI	GCAGC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	115, 321
BsmBI	CGTCTC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	4 cut(s)	271, 476, 554, 691
BspLI	GGNNCC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	33
BspTI	CTTAAG	2 cut(s)	62, 626
BspTNI	GGTCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	854
BssECI	CCNNGG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	75, 335, 415
BstAFI	CTTAAG	2 cut(s)	62, 626
BstC8I	GCNNGC	2 cut(s)	555, 724
BstDEI	CTNAG	5 cut(s)	38, 279, 463, 541, 699
BstF5I	GGATG	3 cut(s)	142, 407, 637
BstMAI	GTCTC	2 cut(s)	115, 321
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	142, 407, 637
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	555, 724
Csp6I	GTAC	3 cut(s)	336, 672, 857
CviAII	CATG	4 cut(s)	526, 608, 742, 906
CviJI	RGCY	7 cut(s)	23, 102, 107, 184, 276, 537, 625
CviKI_1	RGCY	7 cut(s)	23, 102, 107, 184, 276, 537, 625
CviQI	GTAC	3 cut(s)	336, 672, 857
DdeI	CTNAG	5 cut(s)	38, 279, 463, 541, 699
DraIII	CACNNNGTG	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	4 cut(s)	529, 611, 745, 909
FalI	AAGNNNNNCTT	4 cut(s)	566, 598, 609, 641
FatI	CATG	4 cut(s)	525, 607, 741, 905
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	149, 394, 644
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	648
Hin1II	CATG	4 cut(s)	529, 611, 745, 909
HinfI	GANTC	4 cut(s)	263, 283, 346, 521
HphI	GGTGA	3 cut(s)	258, 300, 632
Hpy166II	GTNNAC	2 cut(s)	674, 833
Hpy188I	TCNGA	5 cut(s)	14, 280, 466, 544, 700
Hpy188III	TCNNGA	5 cut(s)	95, 430, 486, 712, 812
Hpy8I	GTNNAC	2 cut(s)	674, 833
HpyAV	CCTTC	2 cut(s)	457, 587
HpyCH4III	ACNGT	3 cut(s)	75, 335, 415
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	8 cut(s)	78, 86, 240, 289, 557, 647, 722, 762
HpyF3I	CTNAG	5 cut(s)	38, 279, 463, 541, 699
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	529, 611, 745, 909
LpnPI	CCDG	9 cut(s)	16, 264, 282, 363, 373, 443, 499, 867, 888
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	3 cut(s)	449, 457, 479
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	209, 301, 321
MboII	GAAGA	1 cut(s)	348
MluCI	AATT	7 cut(s)	90, 161, 373, 474, 689, 805, 845
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	135, 201, 429, 694, 882
MseI	TTAA	6 cut(s)	63, 318, 584, 627, 684, 842
MslI	CAYNNNNRTG	1 cut(s)	740
MspCI	CTTAAG	2 cut(s)	62, 626
NlaIII	CATG	4 cut(s)	529, 611, 745, 909
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	263, 283, 346, 521
PkrI	GCNGC	1 cut(s)	649
PspN4I	GGNNCC	1 cut(s)	35
RsaI	GTAC	3 cut(s)	337, 673, 858
RsaNI	GTAC	3 cut(s)	336, 672, 857
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	6 cut(s)	63, 318, 584, 627, 684, 842
SatI	GCNGC	1 cut(s)	648
ScaI	AGTACT	2 cut(s)	337, 858
SfaNI	GCATC	3 cut(s)	449, 457, 479
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	3 cut(s)	62, 626, 712
SmoI	CTYRAG	3 cut(s)	62, 626, 712
Sse9I	AATT	7 cut(s)	90, 161, 373, 474, 689, 805, 845
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	75, 335, 415
TaiI	ACGT	1 cut(s)	56
TasI	AATT	7 cut(s)	90, 161, 373, 474, 689, 805, 845
TatI	WGTACW	3 cut(s)	335, 671, 856
TfiI	GAWTC	4 cut(s)	263, 283, 346, 521
Tru1I	TTAA	6 cut(s)	63, 318, 584, 627, 684, 842
Tru9I	TTAA	6 cut(s)	63, 318, 584, 627, 684, 842
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	153, 237, 804
TspGWI	ACGGA	2 cut(s)	149, 228
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	2 cut(s)	62, 626
XapI	RAATTY	3 cut(s)	373, 689, 845
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	2 cut(s)	337, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.