Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

983730 .. 986727

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G012200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTCGTCCTAGGACACCATCCCTTGTTGTCATTGCTTATGATGCTACCAAGGACCGCGGTCTGCATGAGCTTAGGCTCACTGTCAATGGTGTCCGAAAGTGGGGTGACATTTTAAGTAGGGGCGATACCATCGTTTTTCTTGGAGTCTTGGACAAGGTCCTTCACCCATTGGGATATCAAGCAAAACCACGCCTGGATTCTATTGAAACCAGCATTCGTGCAGTGGAGGAAGCGGTTAGAAAGAAGGTTGACGGGTATGTTAACATGCTTCTTCGAAGTGCCCAACAGTGTGAAGATCAAAGGGTGAGCATCAAAGTCAAAGTTATTGCTGGTTGTCCAGTTAAGCAGGTTATTTTGCAAGAGCTTATGGCTTGTAATGCAGCCTGGGTTGTACTTGATAGGCACCTCAAACGATATTTGGAATTTTACCTTATGCACATACCTTGCAAGATAGCAGTGATTGAAGATAGCCTGGCTGTGGAGGTTGTGAGAGCTCATCAAATAGAAGACACTGATACTGTAGAGCACAAATGGTTTTATTCCATGTCCAAGCGTGTTCCGACTGGTGAGGACTTTCATAATTTATCTCAGTATCAAATGGCTGTTCTGGCCAGAAATATTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.89

Weight (kDa)

9.03

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	405
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	58, 60, 236
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	103, 481
AgsI	TTSAA	2 cut(s)	209, 467
AjnI	CCWGG	3 cut(s)	195, 386, 474
AluBI	AGCT	3 cut(s)	73, 367, 497
AluI	AGCT	3 cut(s)	73, 367, 497
Alw21I	GWGCWC	2 cut(s)	499, 531
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	55, 160
AsuHPI	GGTGA	4 cut(s)	119, 158, 319, 581
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	55, 160
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	499, 531
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	2 cut(s)	28, 140
BciT130I	CCWGG	3 cut(s)	197, 388, 476
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	1 cut(s)	384
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	197, 388, 476
Bme18I	GGWCC	2 cut(s)	55, 160
BmgT120I	GGNCC	2 cut(s)	55, 160
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	197, 388, 476
BmsI	GCATC	2 cut(s)	34, 321
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	277
BsaJI	CCNNGG	4 cut(s)	11, 51, 58, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 481
Bse1I	ACTGG	2 cut(s)	341, 571
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	3 cut(s)	197, 388, 476
BseDI	CCNNGG	4 cut(s)	11, 51, 58, 387
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	103, 481
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	2 cut(s)	341, 571
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	405
BsiHKAI	GWGCWC	2 cut(s)	499, 531
BslI	CCNNNNNNNGG	2 cut(s)	103, 481
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	614
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	286, 499, 531
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	3 cut(s)	58, 60, 236
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	341, 571
BssECI	CCNNGG	4 cut(s)	11, 51, 58, 387
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	11, 51
Bst2UI	CCWGG	3 cut(s)	197, 388, 476
Bst4CI	ACNGT	3 cut(s)	85, 291, 523
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	74, 591
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 380, 611
BstNI	CCWGG	3 cut(s)	197, 388, 476
BstNSI	RCATGY	1 cut(s)	271
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	195, 386, 474
BstSFI	CTRYAG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	2 cut(s)	231, 465
BtsIMutI	CAGTG	5 cut(s)	81, 231, 296, 465, 513
BveI	ACCTGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	55, 160
Cfr42I	CCGCGG	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	3 cut(s)	68, 268, 547
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	74, 591
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	11, 51
Eco24I	GRGCYC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	55, 160
Eco53kI	GAGCTC	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	195, 386, 474
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	11, 51
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	11, 51
FaeI	CATG	3 cut(s)	71, 271, 550
FaiI	YATR	9 cut(s)	42, 69, 261, 269, 371, 437, 443, 548, 582
FatI	CATG	3 cut(s)	67, 267, 546
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	614
Hin1II	CATG	3 cut(s)	71, 271, 550
HincII	GTYRAC	2 cut(s)	253, 265
HindII	GTYRAC	2 cut(s)	253, 265
HinfI	GANTC	2 cut(s)	147, 200
HpaI	GTTAAC	1 cut(s)	265
HphI	GGTGA	4 cut(s)	119, 158, 319, 581
Hpy166II	GTNNAC	2 cut(s)	253, 265
Hpy188I	TCNGA	2 cut(s)	98, 564
Hpy8I	GTNNAC	2 cut(s)	253, 265
HpyAV	CCTTC	2 cut(s)	173, 241
HpyCH4III	ACNGT	3 cut(s)	85, 291, 523
HpyCH4V	TGCA	6 cut(s)	67, 224, 361, 383, 439, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 380, 611
HpyF3I	CTNAG	2 cut(s)	74, 591
Hsp92II	CATG	3 cut(s)	71, 271, 550
KspAI	GTTAAC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	34, 321
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	266, 308, 479, 521
MhlI	GDGCHC	3 cut(s)	286, 499, 531
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	2 cut(s)	425, 583
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	4 cut(s)	223, 419, 478, 565
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	3 cut(s)	116, 264, 345
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	3 cut(s)	197, 388, 476
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	3 cut(s)	197, 388, 476
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	44, 380, 611
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	71, 271, 550
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	277
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	195, 386, 474
PspGI	CCWGG	3 cut(s)	195, 386, 474
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	55, 160
PspPPI	RGGWCCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	499
SacII	CCGCGG	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	116, 264, 345
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	55, 160
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	197, 388, 476
SduI	GDGCHC	3 cut(s)	286, 499, 531
SfaNI	GCATC	2 cut(s)	34, 321
SfcI	CTRYAG	1 cut(s)	522
Sfr303I	CCGCGG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	55, 160
Sse9I	AATT	2 cut(s)	425, 583
SsiI	CCGC	3 cut(s)	58, 60, 236
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	195, 386, 474
StyI	CCWWGG	2 cut(s)	11, 51
TaaI	ACNGT	3 cut(s)	85, 291, 523
TaqI	TCGA	2 cut(s)	277, 625
TasI	AATT	2 cut(s)	425, 583
TatI	WGTACW	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	116, 264, 345
Tru9I	TTAA	3 cut(s)	116, 264, 345
TscAI	CASTG	5 cut(s)	88, 231, 296, 465, 520
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	569
TspRI	CASTG	5 cut(s)	88, 231, 296, 465, 520
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	55, 160
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.