Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Forward (+)

15510209 .. 15514395

Gene Structure 4187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0113600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAAGTACTACCGTCGACCCTACGGCAGTCGTTCTTGAAGTTCTGAACCAATTTTCAAACTATAGACGTTGGAGTTTGGCGGTCAAGAATTACATGCTGGCTGAAGATCTCTGGGACGTTGTCGAAGACGACACTGAACCTTCTGAAGAAAGTGATTATGAATACAAGACATGGAGGAAGAAGAATGCCAAGGCCTTGCGTACAATCCAAAATTGTTGCGGCGCTTATAATTCTAATTATATCAGTGAAGTTACTTCGGCGAAAGATGCTTGGGACATTTTAGCAAAAATGTTCCAGCCGGTATTTTTTGAGACCACAGAGGAGGGATCTTCTGACAGTGCTACAAATGGCGATATCGGGCACTTGAGTGATATGGAGGAGTTGGGGCTGGATGACAATACAGAATTAGAAGATAATGAAGATACTGCTTACGATGCCAACGGTCCTGATATAATGGATCTTGTATGTGCTGTGATCAACAATGACATTCAAATGGCTAAAAACATAGTTGAAAAGAATAAGACGTTGCTTAGCATCGGCTGCCCTCAAGATGACTCGCTCCCAGTTCTCTGGGCTTATGCGACGGACCAGTGGGAAATGTCTCGCTATTTTTATAAGCATACCCCACTCAAAGCACTAAAAAGTCGGAGTGGCGCAGAACTTATTTCTCAGTCTTTTACTAAAATGGAAGTTGATATTGCGTGGGATTTGATTCATCGTTGCCCTAGCTTGACTGTCGCCACAGACTACTTTGGCCATTCTCCTTTAAATGCATTGGCTGGTATGCGGTGTGCCTTCTTGAGTGGAAGACCGATCAGATTTTGGGAAAAGTGGATTTATGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

283

Amino Acids

32.15

Weight (kDa)

4.45

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4219	PF13961	17 - 43	2.8e-06	Domain of unknown function (DUF4219)
Retrotran_gag_2	PF14223	31 - 100	1.1e-08	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 618
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	3 cut(s)	83, 222, 790
AclWI	GGATC	2 cut(s)	337, 468
AcoI	YGGCCR	1 cut(s)	757
AcuI	CTGAAG	2 cut(s)	126, 168
AfaI	GTAC	2 cut(s)	10, 205
AgsI	TTSAA	4 cut(s)	41, 60, 494, 515
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	732
AluI	AGCT	1 cut(s)	732
Alw26I	GTCTC	2 cut(s)	308, 609
AlwI	GGATC	2 cut(s)	337, 468
AoxI	GGCC	2 cut(s)	195, 757
ApeKI	GCWGC	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	227, 659
AspS9I	GGNCC	2 cut(s)	446, 589
AvaII	GGWCC	2 cut(s)	446, 589
BaeGI	GKGCMC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	135, 817
BbvI	GCAGC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	308, 609
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	228
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	2 cut(s)	223, 544
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	2 cut(s)	224, 545
BmcAI	AGTACT	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	446, 589
BmgT120I	GGNCC	2 cut(s)	446, 589
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	3 cut(s)	259, 427, 546
BmuI	ACTGGG	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	135, 817
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	3 cut(s)	388, 534, 823
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	566, 592
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	686
BseNI	ACTGG	2 cut(s)	566, 592
BseRI	GAGGAG	2 cut(s)	338, 395
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	530
BshFI	GGCC	2 cut(s)	197, 759
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	2 cut(s)	131, 290
BsmAI	GTCTC	2 cut(s)	308, 609
BsmFI	GGGAC	2 cut(s)	131, 290
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	197, 759
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	109, 329, 460, 477, 816
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	3 cut(s)	83, 222, 790
BspANI	GGCC	2 cut(s)	197, 759
BspCNI	CTCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	337, 468
BspTNI	GGTCTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	566, 592
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	109, 329, 460, 477, 816
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	5 cut(s)	16, 341, 446, 739, 848
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	533, 672
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	227, 659
BstKTI	GATC	5 cut(s)	112, 332, 463, 480, 819
BstMAI	GTCTC	2 cut(s)	308, 609
BstMBI	GATC	5 cut(s)	109, 329, 460, 477, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 437, 543
BstNSI	RCATGY	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	530
BstV2I	GAAGAC	2 cut(s)	135, 817
BstX2I	RGATCY	3 cut(s)	109, 329, 460
BstXI	CCANNNNNNTGG	1 cut(s)	573
BstYI	RGATCY	3 cut(s)	109, 329, 460
BsuRI	GGCC	2 cut(s)	197, 759
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	135, 253, 346, 599
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	2 cut(s)	227, 659
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	446, 589
Csp6I	GTAC	2 cut(s)	9, 204
CviAII	CATG	2 cut(s)	97, 174
CviQI	GTAC	2 cut(s)	9, 204
DdeI	CTNAG	2 cut(s)	533, 672
DpnI	GATC	5 cut(s)	111, 331, 462, 479, 818
DpnII	GATC	5 cut(s)	109, 329, 460, 477, 816
DraI	TTTAAA	1 cut(s)	771
EaeI	YGGCCR	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	446, 589
Eco57I	CTGAAG	2 cut(s)	126, 168
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	778
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	100, 177
FaqI	GGGAC	2 cut(s)	131, 290
FatI	CATG	2 cut(s)	96, 173
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	223, 544
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	223, 544
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	2 cut(s)	226, 658
GluI	GCNGC	2 cut(s)	223, 544
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	197, 759
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	2 cut(s)	227, 659
Hin1II	CATG	2 cut(s)	100, 177
Hin6I	GCGC	2 cut(s)	225, 657
HinP1I	GCGC	2 cut(s)	225, 657
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	557, 715
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	5 cut(s)	48, 148, 337, 651, 821
Hpy188III	TCNNGA	5 cut(s)	38, 88, 449, 551, 802
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	20, 589
HpyAV	CCTTC	2 cut(s)	153, 808
HpyCH4III	ACNGT	5 cut(s)	16, 341, 446, 739, 848
HpyCH4IV	ACGT	3 cut(s)	70, 120, 527
HpyCH4V	TGCA	1 cut(s)	776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 437, 543
HpyF3I	CTNAG	2 cut(s)	533, 672
HpySE526I	ACGT	3 cut(s)	70, 120, 527
Hsp92II	CATG	2 cut(s)	100, 177
HspAI	GCGC	2 cut(s)	225, 657
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	109, 329, 460, 477, 816
LmnI	GCTCC	1 cut(s)	567
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	3 cut(s)	259, 427, 546
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	3 cut(s)	70, 120, 527
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	5 cut(s)	111, 331, 462, 479, 818
MboI	GATC	5 cut(s)	109, 329, 460, 477, 816
MboII	GAAGA	9 cut(s)	119, 140, 161, 193, 196, 324, 425, 434, 822
MflI	RGATCY	3 cut(s)	109, 329, 460
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	6 cut(s)	53, 91, 214, 232, 238, 407
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	53, 629
MnlI	CCTC	5 cut(s)	171, 316, 319, 373, 558
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	770, 850
MslI	CAYNNNNRTG	2 cut(s)	369, 494
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	269, 437, 543
NdeII	GATC	5 cut(s)	109, 329, 460, 477, 816
NlaIII	CATG	2 cut(s)	100, 177
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	197
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	224, 545
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PsiI	TTATAA	2 cut(s)	231, 618
PspPI	GGNCC	2 cut(s)	446, 589
PsuI	RGATCY	3 cut(s)	109, 329, 460
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	10, 205
RsaNI	GTAC	2 cut(s)	9, 204
RseI	CAYNNNNRTG	2 cut(s)	369, 494
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	770, 850
SatI	GCNGC	2 cut(s)	223, 544
Sau3AI	GATC	5 cut(s)	109, 329, 460, 477, 816
Sau96I	GGNCC	2 cut(s)	446, 589
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	5 cut(s)	73, 123, 145, 530, 734
SfaNI	GCATC	3 cut(s)	259, 427, 546
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	446, 589
SmiMI	CAYNNNNRTG	2 cut(s)	369, 494
SmlI	CTYRAG	3 cut(s)	367, 549, 802
SmoI	CTYRAG	3 cut(s)	367, 549, 802
Sse9I	AATT	6 cut(s)	53, 91, 214, 232, 238, 407
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	83, 222, 790
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	16, 341, 446, 739, 848
TaiI	ACGT	3 cut(s)	73, 123, 530
TaqI	TCGA	2 cut(s)	18, 126
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	6 cut(s)	53, 91, 214, 232, 238, 407
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	2 cut(s)	770, 850
Tru9I	TTAA	2 cut(s)	770, 850
TscAI	CASTG	4 cut(s)	142, 253, 346, 599
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	3 cut(s)	177, 435, 707
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	4 cut(s)	142, 253, 346, 599
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	446, 589
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.