Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Reverse (-)

15583426 .. 15591467

Gene Structure 8042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGTGTTGGTGTGGGACTTGAAGACTGGGGAGAAGGTCCAAACTCTCAAGGGCCACCAGTTGCTGGTCATCAGCCTCACTTTCGATAATGGAGACATTGTTTCATCTTCTGCGGATAAGCGTCGAAGACATGTGGAAGCATCTAGAAGTCTCAAGAAGATCATTACCGAATTGGACACAAGTTGTTCTTTAAAAATCAAATCCATTACAGATTCGGAAAACTGCCAGTGCAGATCAGTCAACTTCAACGGAGTGTCAAAAATCTATCAGAGCTCAGAAAATTATGATCTTTATATGGTTGGAAAGCTACGGATGTCTAGTTTCCAGAACTTTTTACAGCTCGTCGATATCTATTTTCTAGAAGAAGTTATGACCCAACCATGTGGAGTTGCAGCTATGATCATTGAAGCCATTATAATGGACTTCTTACCATTGCATTCACACTACAATAATATACATACCTTCCTTCATCAATTTTCCATCTTCTTCCTCTCTCCATTTTCTTACCATAGCAGTTTTCATATCTTCAAGGAGCTTAGCTGTGCCATCCACCCTCCTAGCTGTGATCACCACCTTGTGCCGCCACCTTGGAGCTGCTTTGGATATTTGGGACGTAATCAAGGGTTGTTCATTCCACTATTATCATCATATCTTCACGGTTATGTGGTTAAAATATTGCGTGCTACTTTGAGCGTGTCAAGGTGGAGGAATGGCCAACCAGTAGAATCTTGGGAGGCTCATAAGGCAGCAATCCAAGCTGTTTTAAAGCTTCCTTCTGGCGAGCTTGTCACTGGTTCAAGTGATACTACTATAAAACTTTGGAGAGGAACTACATGCACTCACACTTTTATTGGGCATACAGATATGGTTAGAAGCTTGGCAATGATGTCTGGATTGGGAGTTCTTTTTGCTTCAAATGATCGTTCTATCAGGTTATGGGATCTAAGTGGTGAAGTTTTAATGGAGATGGTCGGTCATACTTCTATTGTCTATTCAGTTGATTCGCATGTTTCTGGACTAATAATCAGCAGAAGCGAAGATTGTTTTGCCAAGATATGGAAAGAAAGTAGCAGAAATTTTATAGAGTCTTGTGCTTATGTTATTGAAAGAGAAACTGGTGATTTAAGGCCTGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.84

Weight (kDa)

6.78

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	228 - 294	3.8e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	232 - 361	1e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	235 - 362	7.3e-17	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	237 - 360	1e-09	Prp19 WD40 domain
WD40_Gbeta	PF25391	238 - 353	2.2e-07	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	246 - 358	2.6e-08	SCAP Beta-propeller
Beta-prop_TEP1_2nd	PF25047	246 - 356	2.8e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	262 - 357	2.6e-07	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AccB7I	CCANNNNNTGG	2 cut(s)	64, 1056
AciI	CCGC	2 cut(s)	113, 581
AclWI	GGATC	1 cut(s)	948
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	1075
AdeI	CACNNNGTG	1 cut(s)	577
AfiI	CCNNNNNNNGG	2 cut(s)	64, 1056
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	7 cut(s)	22, 247, 407, 529, 798, 915, 1106
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	87, 155
AlwI	GGATC	1 cut(s)	948
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	52, 712, 1127
ApeKI	GCWGC	3 cut(s)	392, 594, 746
ApoI	RAATTY	1 cut(s)	1075
AspS9I	GGNCC	2 cut(s)	37, 52
AsuHPI	GGTGA	3 cut(s)	560, 962, 1130
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	29, 133
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	404, 581, 758
BccI	CCATC	3 cut(s)	488, 554, 961
BclI	TGATCA	2 cut(s)	399, 565
BcoDI	GTCTC	2 cut(s)	87, 155
BfaI	CTAG	4 cut(s)	144, 318, 359, 558
BisI	GCNGC	4 cut(s)	393, 581, 595, 747
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	4 cut(s)	394, 582, 596, 748
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 52
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	2 cut(s)	29, 133
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	32, 137
BsaJI	CCNNGG	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 1056
Bse1I	ACTGG	6 cut(s)	31, 58, 226, 719, 796, 1120
Bse3DI	GCAATG	2 cut(s)	431, 888
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	2 cut(s)	318, 546
BseLI	CCNNNNNNNGG	2 cut(s)	64, 1056
BseMI	GCAATG	2 cut(s)	431, 888
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	6 cut(s)	31, 58, 226, 719, 796, 1120
BseXI	GCAGC	3 cut(s)	404, 581, 758
BsgI	GTGCAG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	54, 714, 1129
BsiHKAI	GWGCWC	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	29, 624
BslI	CCNNNNNNNGG	2 cut(s)	64, 1056
BsmAI	GTCTC	2 cut(s)	87, 155
BsmFI	GGGAC	2 cut(s)	29, 624
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	54, 714, 1129
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	2 cut(s)	113, 581
BspANI	GGCC	3 cut(s)	54, 714, 1129
BspCNI	CTCAG	1 cut(s)	287
BspPI	GGATC	1 cut(s)	948
BsrDI	GCAATG	2 cut(s)	431, 888
BsrI	ACTGG	6 cut(s)	31, 58, 226, 719, 796, 1120
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
BssT1I	CCWWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	681, 782
BstDEI	CTNAG	3 cut(s)	274, 536, 944
BstF5I	GGATG	2 cut(s)	318, 546
BstKTI	GATC	7 cut(s)	162, 236, 289, 402, 568, 922, 943
BstMAI	GTCTC	2 cut(s)	87, 155
BstMBI	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	743, 755
BstNSI	RCATGY	3 cut(s)	134, 837, 1010
BstV1I	GCAGC	3 cut(s)	404, 581, 758
BstV2I	GAAGAC	2 cut(s)	29, 133
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	2 cut(s)	383, 418
BstYI	RGATCY	1 cut(s)	940
BsuRI	GGCC	3 cut(s)	54, 714, 1129
BtsCI	GGATG	2 cut(s)	318, 546
BtsIMutI	CAGTG	2 cut(s)	233, 789
Cac8I	GCNNGC	2 cut(s)	681, 782
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	37, 52
CseI	GACGC	1 cut(s)	110
CviAII	CATG	4 cut(s)	131, 381, 834, 1007
DdeI	CTNAG	3 cut(s)	274, 536, 944
DpnI	GATC	7 cut(s)	161, 235, 288, 401, 567, 921, 942
DpnII	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
DraI	TTTAAA	2 cut(s)	192, 765
DraIII	CACNNNGTG	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	712
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	587
Eco147I	AGGCCT	1 cut(s)	1129
Eco24I	GRGCYC	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	4 cut(s)	134, 384, 837, 1010
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	29, 624
FatI	CATG	4 cut(s)	130, 380, 833, 1006
FbaI	TGATCA	2 cut(s)	399, 565
Fnu4HI	GCNGC	4 cut(s)	393, 581, 595, 747
FokI	GGATG	2 cut(s)	325, 533
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	4 cut(s)	393, 581, 595, 747
FspBI	CTAG	4 cut(s)	144, 318, 359, 558
GluI	GCNGC	4 cut(s)	393, 581, 595, 747
HaeIII	GGCC	3 cut(s)	54, 714, 1129
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	134, 384, 837, 1010
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	767, 874
HinfI	GANTC	4 cut(s)	212, 725, 1001, 1085
HphI	GGTGA	3 cut(s)	560, 962, 1130
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	217, 270, 277
Hpy188III	TCNNGA	6 cut(s)	144, 154, 325, 359, 891, 1014
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	126, 347
HpyAV	CCTTC	4 cut(s)	28, 472, 476, 783
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	4 cut(s)	231, 392, 436, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	743, 755
HpyF3I	CTNAG	3 cut(s)	274, 536, 944
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	4 cut(s)	134, 384, 837, 1010
Ksp22I	TGATCA	2 cut(s)	399, 565
Kzo9I	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
LmnI	GCTCC	2 cut(s)	532, 591
Lsp1109I	GCAGC	3 cut(s)	404, 581, 758
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	4 cut(s)	144, 318, 359, 558
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	7 cut(s)	161, 235, 288, 401, 567, 921, 942
MboI	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	5 cut(s)	170, 280, 473, 1075, 1133
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	1094
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	86, 500, 564, 699, 727, 818
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	5 cut(s)	191, 669, 764, 959, 1124
MslI	CAYNNNNRTG	2 cut(s)	416, 660
Msp20I	TGGCCA	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	743, 755
NdeII	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
NlaIII	CATG	4 cut(s)	134, 384, 837, 1010
NmuCI	GTSAC	1 cut(s)	787
NspI	RCATGY	3 cut(s)	134, 837, 1010
PceI	AGGCCT	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	212, 725, 1001
PflMI	CCANNNNNTGG	2 cut(s)	64, 1056
PkrI	GCNGC	4 cut(s)	394, 582, 596, 748
PleI	GAGTC	1 cut(s)	1093
PpsI	GAGTC	1 cut(s)	1093
PscI	ACATGT	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	37, 52
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	940
RseI	CAYNNNNRTG	2 cut(s)	416, 660
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	191, 669, 764, 959, 1124
SatI	GCNGC	4 cut(s)	393, 581, 595, 747
Sau3AI	GATC	7 cut(s)	159, 233, 286, 399, 565, 919, 940
Sau96I	GGNCC	2 cut(s)	37, 52
SchI	GAGTC	1 cut(s)	1094
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	149
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	416, 660
SmlI	CTYRAG	2 cut(s)	47, 152
SmoI	CTYRAG	2 cut(s)	47, 152
Sse9I	AATT	5 cut(s)	170, 280, 473, 1075, 1133
SseBI	AGGCCT	1 cut(s)	1129
SsiI	CCGC	2 cut(s)	113, 581
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	4 cut(s)	144, 318, 359, 558
SstI	GAGCTC	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	1129
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	84, 124, 345
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	5 cut(s)	170, 280, 473, 1075, 1133
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	3 cut(s)	212, 725, 1001
Tru1I	TTAA	5 cut(s)	191, 669, 764, 959, 1124
Tru9I	TTAA	5 cut(s)	191, 669, 764, 959, 1124
TscAI	CASTG	2 cut(s)	233, 796
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	3 cut(s)	392, 594, 746
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	4 cut(s)	93, 458, 509, 619
TspGWI	ACGGA	2 cut(s)	264, 325
TspRI	CASTG	2 cut(s)	233, 796
Van91I	CCANNNNNTGG	2 cut(s)	64, 1056
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	1075
XbaI	TCTAGA	2 cut(s)	143, 358
XceI	RCATGY	3 cut(s)	134, 837, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	726
XspI	CTAG	4 cut(s)	144, 318, 359, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.