Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001474.1

Orthogroup ID

OG0009653

Physical Location & Seq

Genomic Coordinates Reverse (-)

91067 .. 92636

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001474.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggcgagtcctatgacgccatcacatgttgttattgcctatgatgccaccaaggaccgcggtaggcaggaacttaagctcacccttgatgctgtgaggatgaggggtgacattttaaaggccggcgacaccattgttgtgcttggagtcttgcacagggtggttcatccaatgggatataatgcgaaaccatacccagaattctttggaacaagctttcgtgcagtggaggaagaagttacaaagaaagttgacatgtacgttaacatgcttcttgaaagtgcggaaaagtgtgaagaaaatggggtcagcatagaagtcaaagttactgctggttttcccatcaaacgggttatctcgcaagagataatggcctgtaatgcagcttgggttgtacttgataggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

6.3

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15260
malus_domestica	MD05G1010000.v1.1 MD10G1008700.v1.1
prunus_persica	Prupe.8G012200_v2.0.a1 Prupe.8G012300_v2.0.a1 Prupe.8G012500_v2.0.a1
pyrus_communis	pycom05g00520 pycom10g00520
rosa_chinensis	RchiOBHm_Chr6g0277981
rosa_laevigata	RLG00000013250
rosa_multiflora	Rmu_sc0001474.1_g000022
rosa_roxburghii	Rroxscaffold_7G00190610 Rroxscaffold_7G00190620
rosa_rugosa	Rorug06G0113500 Rorug06G0113600 Rorug06G0113700 Rorug06G0113800
rosa_samantha	Rh6AG223500 Rh6BG227700 Rh6CG230200 Rh6DG221000
rosa_wichuraiana	Rw6G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	58, 60, 284
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	2 cut(s)	260, 396
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflII	CTTAAG	1 cut(s)	74
AflIII	ACRYGT	2 cut(s)	25, 255
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	3 cut(s)	79, 216, 386
AluI	AGCT	3 cut(s)	79, 216, 386
AoxI	GGCC	2 cut(s)	120, 372
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	73, 119
AvaII	GGWCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	2 cut(s)	28, 350
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	34, 79
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	51, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	51, 58
BseGI	GGATG	2 cut(s)	105, 166
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	122, 374
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	2 cut(s)	122, 374
BspACI	CCGC	3 cut(s)	58, 60, 284
BspANI	GGCC	2 cut(s)	122, 374
BspFNI	CGCG	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	51, 58
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	105, 166
BstFNI	CGCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 380
BstNSI	RCATGY	3 cut(s)	29, 259, 271
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	122, 374
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	105, 166
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	61
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	259, 395
CviAII	CATG	3 cut(s)	26, 256, 268
CviJI	RGCY	5 cut(s)	79, 122, 216, 374, 386
CviKI_1	RGCY	5 cut(s)	79, 122, 216, 374, 386
CviQI	GTAC	2 cut(s)	259, 395
DraI	TTTAAA	1 cut(s)	117
DraIII	CACNNNGTG	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	29, 259, 271
FaiI	YATR	8 cut(s)	14, 27, 42, 180, 193, 257, 269, 314
FatI	CATG	3 cut(s)	25, 255, 267
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	112, 153
Fsp4HI	GCNGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	122, 374
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	29, 259, 271
HincII	GTYRAC	2 cut(s)	253, 265
HindII	GTYRAC	2 cut(s)	253, 265
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	2 cut(s)	7, 147
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	73, 119
Hpy166II	GTNNAC	2 cut(s)	253, 265
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	253, 265
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	154, 224, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 380
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	29, 259, 271
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	53, 136, 142, 210, 318, 388
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	34, 79
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	107, 238, 325
MboII	GAAGA	2 cut(s)	245, 308
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	16, 156
MnlI	CCTC	3 cut(s)	90, 96, 223
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	3 cut(s)	75, 116, 264
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	44, 380
NaeI	GCCGGC	1 cut(s)	124
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	29, 259, 271
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	3 cut(s)	29, 259, 271
PciI	ACATGT	2 cut(s)	25, 255
PdiI	GCCGGC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	2 cut(s)	15, 155
PpsI	GAGTC	2 cut(s)	15, 155
PscI	ACATGT	2 cut(s)	25, 255
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	260, 396
RsaNI	GTAC	2 cut(s)	259, 395
RseI	CAYNNNNRTG	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	75, 116, 264
SatI	GCNGC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	16, 156
SetI	ASST	5 cut(s)	81, 218, 264, 388, 407
SfaNI	GCATC	2 cut(s)	34, 79
Sfr303I	CCGCGG	1 cut(s)	61
SgrBI	CCGCGG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	3 cut(s)	58, 60, 284
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	264
TasI	AATT	1 cut(s)	200
TatI	WGTACW	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	75, 116, 264
Tru9I	TTAA	3 cut(s)	75, 116, 264
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	231
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	3 cut(s)	29, 259, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.