MD10G1077800.v1.1
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006872
Physical Location & Seq
Reverse (-)
10999013 .. 11004377
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1077800.v1.1.491

Sequence Viewer

Length: 3000 bp
ATGGAAGAAAAACGCCGTGACGCCGCCGGAACTCAGCCGGCGTCAAATGCCGACTCTCCGGCCACCGAGCCGTCTTCTACCCGGCGCCGCGGCGGAGCACAAAAGCGAAAGGCAAGCAGCCTCGGCGGCTCAACCTCTTCATCCACGCCGTCCAAACGTTTCGCTCGCGAGAAGCCTTTGCTTTCTCACACTCCGATCCACAACGGCCCGTTGACCCGGGCCCGTCAGGGCCCTAGCAGCCTCGCTTCGGCTTCGGCTTCAGCAGCTGGGGCTGCTGCGAAGCCGGCGGCGCAAGCCAAGCGGCCTGACCCGGTGGGGGAGGCTGTGGCTGAGCTGGTGAAACGGGAGAGCGAGTTGGAGGCTCTGGAGGCTTCTATGGAGGCTGAGTTTGAAGCCATTAGATCTCGCGGTGCCAATGCTCATGTTGTTCCTAGTCATTGCGGTTGGTTTTCATGGACAAAGGTTCACTCCATTGAGGAGCAAATGTTGGCGTCTTTCTTTAATGGGAAGTCTGAGACTCGGACGCCTGATGTATACTTGGAGATCCGTAATTGCATCATGAAGAAATTCCATGCAAATCCGGGCACATTTATTGAATTAAAGGATTTGTTGGAGCTTGAAGTTGGAGAATTTGATGCTAGACAAGAAGTACTGGAATTTTTGGACCACTGGGGTTTGATTAACTTCAACCCATTCCCACCAACAGGTTCTGCTGTGGCCAGTGCCAATAGTGATGGGGTGGCAGAAAAGGATTCTTTGGTTGATAAGTTGTATCACTTTGAAGAATTACAATCACGTTCATCAGTTGTTCCCAAGACTAATATAACAACCCCAACATTACCATCTGGGTTGTTTCCTGAGTCTGCAATTGCTGAAGAGTTGGTGTGGCCTGAGGGACCATCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGTAAGCGATACCATTGCCAGAAGCAGGCAGATTTTGATCTATGCACTGATTGCTTTAATAATGGGAAATTCGACTCTGGCATGTCTTCATCAGATTTCATTCTTATGGAGCCTGCTGAAGCTCCTGGGGTTAGTGGTGGGAACTGGACAGATCAGGAGACTCTTCTTCTCCTTGAAGCATTAGAACTTTATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCAACAAAAACAAAAGCTCAATGTATACTGCACTTTGTTCAAATGCCAATTGAGGACACTTTTCTTGATTATGAGGATGGTTTGGAGGGTAGTGCCAAAGAGACTGCAGATCCAACTTCAACTGGAAATGATTTTTCGGCCCCCAAAGATGTCCCTGAAACAACAGAGAATAAGACTGCTGTTAATGAGAGTGACCCCCAAACTTCCCTGATGGAAACTTCAAAACAAGGGACAGAAGTAAATGTTGGAGAGGATACTTCAAAGCCAGAAGATTTGAATGAAGTTAAAGACGGTCAGGAAACTTCAACATTGGAAGATACCGGTGAATTGAAAGTTGATCAGGAAACAGATGAGAACTTTGCACTGAAGGCGCTTAAAGAAGCATTTGAAGTTGTTGGTTATCCTCCAACATCTGAAGGCCACCTTTCATTTACAGAAGTTGGCAACCCTGCCATGGCATTGGCAGCATTCTTTGCACGTTTGGTGGGACCTGATGCTGCTATTGCTTCAGCACATAATTCTTTGAAATCTATATCTGCCAGTTCTCCTGGAACTGAGCTGGCTGCAAGGCATTGCTTTATTTTGGAAGATCCACCGAATGACAGTAAGGAACAGGCTGGTCCTGATAGTGTTTCTGCTGAAGGGGAGACGCAAAAAGACAAAGTTCATGAAGACAAAAGCCAGAAAGCGGATAACTCCACCTCAGGTTTGGAAGATAAAGATTTATCAAATGATAACAGTGACAAGAAACTTGAAAAACCTTCTACTGAAGAAAAGTCGCAGTCTGCAAAAGAACAAGATGACATAGTTTCTCATGAGGAAGTAGGAAATGATAATTTGAAGAAATCGGACAATTTAGAGTTAACAAGGGATGAATCGCCAACTACTGCGGGGGAGTCAACTGACTCAAAAGTGGAGACAGGGCATCAAACAAGTTCTGAGAAGGAATCAGCAGAAGGAGCAGGAAAGCCTTCTGAACCTACAGAGACAGGAAGGGATGTGGATATGTCTGATGCAGTTCCCTCTACAAAAAATGAGACTCAACAACCAGTTACATCAAGTTCAGTCGAGGAACCTCTTCAATCTGAAGAAGCAAAAGATGTAGATGTATCTAATTCTCTTGCTACAGAAATAAATGAGCCTCAGCCACTGGTTACTGCCAAATCACAAGAACCCCCTGAACGTACAGTGGTACTAAAGGATGTAGATATGGTGTGTGATTCTCAGACCCCACAAAGGGACGAGCCTCAGCAACCAGTTGCATCAAATTCAGTAGTTGAAAAGGGAGCAAGTGAGGATCAAACTAAAGATGGTAAAATAGAAAAACATGACAGTACGGAGACAAAAGTGGGTCAGAAAATTGATAAATTAAAGCTTGCTGCAGTTTCCGCGGTGTCAGCGGCTGCAGTGAAGGCAAAGCTTCTAGCAGAACAGGAAGAAGATCAAATCCGACAACTTGCAGCAATGTTGGTGGAGAAGCAGTTGCATAAGTTGGAAGCCAAATTAGGTTTCTTCAACGAGATGGAACATGTTGTAATGAGGGTAAGAGAGCAATTGGACAGGTCAAGACAGAAGCTCTACCATGAGCGAGCCCAGATAATTGCATCCCGCCTTGGCTTACCAGGTTCATCTAGAGGCATGCCATCATCAATGCCTGCCAATAGAATGGCCATGAATATGGCAAACCCAAGTCCAAGGCCCCCGCTAGGCATAACTTCCCACAGGCCACCTATGTCAAGACCCATGGGGGCAGCAGCCCCGACTTCGAACCAATTTTCAGCCACAACATTGGCAGGAAGTTCACTACGGCCTCCTAGCCAGGACAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

1000

Amino Acids

108.19

Weight (kDa)

4.82

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 151 - 229 8.7e-20 SWIRM domain
ZZ PF00569 303 - 338 2.5e-08 Zinc finger, ZZ type
Myb_DNA-binding PF00249 361 - 403 5.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 363 - 403 1.3e-06 Myb-like DNA-binding domain
SWIRM-assoc_1 PF16495 852 - 928 2.4e-24 SWIRM-associated region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
AccB1I GGYRCC 2 cut(s) 84, 410
AccI GTMKAC 2 cut(s) 534, 1192
AccII CGCG 4 cut(s) 90, 168, 408, 2558
AclI AACGTT 1 cut(s) 157
AclWI GGATC 5 cut(s) 190, 538, 1271, 1751, 2472
AcoI YGGCCR 3 cut(s) 60, 717, 2835
AcsI RAATTY 5 cut(s) 566, 629, 656, 1010, 2434
AcuI CTGAAG 9 cut(s) 243, 894, 1080, 1553, 1602, 1659, 1827, 1956, 2274
AcyI GRCGYC 5 cut(s) 21, 41, 85, 491, 524
AfaI GTAC 5 cut(s) 651, 911, 2353, 2361, 2503
AfiI CCNNNNNNNGG 9 cut(s) 247, 316, 704, 967, 1621, 1855, 2403, 2404, 2873
AflIII ACRYGT 2 cut(s) 1162, 2695
AgeI ACCGGT 1 cut(s) 1487
AjnI CCWGG 4 cut(s) 1066, 1714, 2788, 2985
AjuI GAANNNNNNNTTGG 4 cut(s) 1395, 1427, 2660, 2692
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 8 cut(s) 509, 1094, 1262, 1808, 2078, 2147, 2198, 2501
AlwI GGATC 5 cut(s) 190, 538, 1271, 1751, 2472
AlwNI CAGNNNCTG 4 cut(s) 266, 710, 2317, 2570
Ama87I CYCGRG 1 cut(s) 216
ApaI GGGCCC 2 cut(s) 223, 233
ApoI RAATTY 5 cut(s) 566, 629, 656, 1010, 2434
AsiGI ACCGGT 1 cut(s) 1487
Asp700I GAANNNNTTC 3 cut(s) 566, 2137, 2244
AspLEI GCGC 3 cut(s) 87, 292, 1540
AsuC2I CCSGG 5 cut(s) 82, 217, 218, 311, 582
AsuHPI GGTGA 2 cut(s) 349, 1502
AsuII TTCGAA 1 cut(s) 2933
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 4 cut(s) 664, 896, 1655, 1787
AxyI CCTNAGG 2 cut(s) 891, 1870
BaeGI GKGCMC 3 cut(s) 223, 233, 587
BalI TGGCCA 2 cut(s) 719, 2837
BanI GGYRCC 2 cut(s) 84, 410
BanII GRGCYC 3 cut(s) 223, 233, 2761
BbsI GAAGAC 3 cut(s) 66, 1020, 1845
Bbv12I GWGCWC 1 cut(s) 100
BbvCI CCTCAGC 2 cut(s) 2310, 2415
BccI CCATC 8 cut(s) 728, 850, 907, 1238, 1372, 2471, 2683, 2818
BceAI ACGGC 4 cut(s) 55, 133, 220, 2990
BcgI CGANNNNNNTGC 2 cut(s) 939, 973
BciT130I CCWGG 4 cut(s) 1068, 1716, 2790, 2987
BciVI GTATCC 1 cut(s) 1414
BclI TGATCA 1 cut(s) 1504
BcnI CCSGG 5 cut(s) 82, 217, 218, 311, 582
BcoDI GTCTC 8 cut(s) 509, 1094, 1262, 1808, 2078, 2147, 2198, 2501
BfaI CTAG 7 cut(s) 234, 432, 639, 2591, 2799, 2873, 2982
BfmI CTRYAG 5 cut(s) 1272, 2148, 2292, 2547, 2571
BfoI RGCGCY 2 cut(s) 88, 1541
BfuI GTATCC 1 cut(s) 1414
BglI GCCNNNNNGGC 1 cut(s) 126
BglII AGATCT 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 9 cut(s) 82, 217, 218, 311, 582, 1068, 1716, 2790, 2987
Bme18I GGWCC 4 cut(s) 664, 896, 1655, 1787
BmeT110I CYCGRG 1 cut(s) 216
BmrFI CCNGG 9 cut(s) 82, 217, 218, 311, 582, 1068, 1716, 2790, 2987
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 7 cut(s) 564, 625, 1651, 2101, 2170, 2438, 2780
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 3 cut(s) 66, 1020, 1845
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 2 cut(s) 2310, 2415
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 2933
BpuMI CCSGG 5 cut(s) 82, 217, 218, 311, 582
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 5 cut(s) 21, 41, 85, 491, 524
BsaJI CCNNGG 9 cut(s) 88, 121, 216, 1067, 1620, 2556, 2779, 2861, 2910
BsaWI WCCGGW 1 cut(s) 1487
BsaXI ACNNNNNCTCC 8 cut(s) 338, 368, 371, 401, 470, 500, 2633, 2663
Bsc4I CCNNNNNNNGG 9 cut(s) 247, 316, 704, 967, 1621, 1855, 2403, 2404, 2873
Bse118I RCCGGY 3 cut(s) 37, 283, 1487
Bse21I CCTNAGG 2 cut(s) 891, 1870
Bse3DI GCAATG 5 cut(s) 436, 913, 955, 1738, 2637
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 4 cut(s) 1068, 1716, 2790, 2987
BseDI CCNNGG 9 cut(s) 88, 121, 216, 1067, 1620, 2556, 2779, 2861, 2910
BseGI GGATG 6 cut(s) 140, 1249, 2044, 2170, 2374, 2771
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 9 cut(s) 247, 316, 704, 967, 1621, 1855, 2403, 2404, 2873
BseMI GCAATG 5 cut(s) 436, 913, 955, 1738, 2637
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 3 cut(s) 223, 233, 587
BseYI CCCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 1181
Bsh1236I CGCG 4 cut(s) 90, 168, 408, 2558
BshNI GGYRCC 2 cut(s) 84, 410
BshTI ACCGGT 1 cut(s) 1487
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 9 cut(s) 27, 38, 59, 82, 217, 284, 311, 581, 1488
BslFI GGGAC 5 cut(s) 909, 1304, 1411, 1668, 2420
BslI CCNNNNNNNGG 9 cut(s) 247, 316, 704, 967, 1621, 1855, 2403, 2404, 2873
BsmAI GTCTC 8 cut(s) 509, 1094, 1262, 1808, 2078, 2147, 2198, 2501
BsmBI CGTCTC 1 cut(s) 1808
BsmFI GGGAC 5 cut(s) 909, 1304, 1411, 1668, 2420
BsmI GAATGC 1 cut(s) 1634
BsoBI CYCGRG 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 2933
Bsp120I GGGCCC 2 cut(s) 219, 229
Bsp1286I GDGCHC 5 cut(s) 100, 223, 233, 587, 2761
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 2 cut(s) 1620, 2910
Bsp68I TCGCGA 1 cut(s) 168
BspFNI CGCG 4 cut(s) 90, 168, 408, 2558
BspHI TCATGA 3 cut(s) 558, 1834, 1981
BspMAI CTGCAG 3 cut(s) 1276, 2551, 2575
BspPI GGATC 5 cut(s) 190, 538, 1271, 1751, 2472
BspT104I TTCGAA 1 cut(s) 2933
BspT107I GGYRCC 2 cut(s) 84, 410
BsrDI GCAATG 5 cut(s) 436, 913, 955, 1738, 2637
BsrFI RCCGGY 3 cut(s) 37, 283, 1487
BssAI RCCGGY 3 cut(s) 37, 283, 1487
BssECI CCNNGG 9 cut(s) 88, 121, 216, 1067, 1620, 2556, 2779, 2861, 2910
BssNAI GTATAC 2 cut(s) 535, 1193
BssNI GRCGYC 5 cut(s) 21, 41, 85, 491, 524
BssT1I CCWWGG 4 cut(s) 1620, 2779, 2861, 2910
Bst1107I GTATAC 2 cut(s) 535, 1193
Bst2UI CCWGG 4 cut(s) 1068, 1716, 2790, 2987
Bst4CI ACNGT 5 cut(s) 1460, 1772, 1907, 2356, 2501
Bst6I CTCTTC 4 cut(s) 142, 870, 1110, 2250
BstACI GRCGYC 5 cut(s) 21, 41, 85, 491, 524
BstAPI GCANNNNNTGC 2 cut(s) 993, 1640
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 2933
BstDSI CCRYGG 4 cut(s) 88, 1620, 2556, 2910
BstF5I GGATG 6 cut(s) 140, 1249, 2044, 2170, 2374, 2771
BstFNI CGCG 4 cut(s) 90, 168, 408, 2558
BstH2I RGCGCY 2 cut(s) 88, 1541
BstHHI GCGC 3 cut(s) 87, 292, 1540
BstMAI GTCTC 8 cut(s) 509, 1094, 1262, 1808, 2078, 2147, 2198, 2501
BstNI CCWGG 4 cut(s) 1068, 1716, 2790, 2987
BstNSI RCATGY 4 cut(s) 1027, 1166, 2699, 2809
BstSCI CCNGG 9 cut(s) 80, 215, 216, 309, 580, 1066, 1714, 2788, 2985
BstSFI CTRYAG 5 cut(s) 1272, 2148, 2292, 2547, 2571
BstSLI GKGCMC 3 cut(s) 223, 233, 587
BstUI CGCG 4 cut(s) 90, 168, 408, 2558
BstV2I GAAGAC 3 cut(s) 66, 1020, 1845
BstX2I RGATCY 4 cut(s) 401, 543, 1276, 1756
BstXI CCANNNNNNTGG 4 cut(s) 1627, 2833, 2845, 2956
BstYI RGATCY 4 cut(s) 401, 543, 1276, 1756
BstZ17I GTATAC 2 cut(s) 535, 1193
Bsu36I CCTNAGG 2 cut(s) 891, 1870
BsuI GTATCC 1 cut(s) 1414
BtgI CCRYGG 4 cut(s) 88, 1620, 2556, 2910
BtsCI GGATG 6 cut(s) 140, 1249, 2044, 2170, 2374, 2771
BtsI GCAGTG 1 cut(s) 2580
BtsIMutI CAGTG 8 cut(s) 667, 727, 987, 1529, 1912, 2315, 2361, 2580
BtuMI TCGCGA 1 cut(s) 168
CaiI CAGNNNCTG 4 cut(s) 266, 710, 2317, 2570
CciI TCATGA 3 cut(s) 558, 1834, 1981
CfoI GCGC 3 cut(s) 87, 292, 1540
Cfr10I RCCGGY 3 cut(s) 37, 283, 1487
Cfr42I CCGCGG 2 cut(s) 91, 2559
Cfr9I CCCGGG 1 cut(s) 216
CseI GACGC 5 cut(s) 29, 30, 480, 532, 1825
CsiI ACCWGGT 1 cut(s) 2788
Csp6I GTAC 5 cut(s) 650, 910, 2352, 2360, 2502
CspAI ACCGGT 1 cut(s) 1487
CspCI CAANNNNNGTGG 2 cut(s) 2619, 2654
CviQI GTAC 5 cut(s) 650, 910, 2352, 2360, 2502
DinI GGCGCC 1 cut(s) 86
EaeI YGGCCR 3 cut(s) 60, 717, 2835
Eam1104I CTCTTC 4 cut(s) 142, 870, 1110, 2250
EarI CTCTTC 4 cut(s) 142, 870, 1110, 2250
EciI GGCGGA 1 cut(s) 108
Eco130I CCWWGG 4 cut(s) 1620, 2779, 2861, 2910
Eco24I GRGCYC 3 cut(s) 223, 233, 2761
Eco47I GGWCC 4 cut(s) 664, 896, 1655, 1787
Eco57I CTGAAG 9 cut(s) 243, 894, 1080, 1553, 1602, 1659, 1827, 1956, 2274
Eco81I CCTNAGG 2 cut(s) 891, 1870
Eco88I CYCGRG 1 cut(s) 216
EcoO109I RGGNCCY 4 cut(s) 229, 230, 1655, 2865
EcoRII CCWGG 4 cut(s) 1066, 1714, 2788, 2985
EcoT14I CCWWGG 4 cut(s) 1620, 2779, 2861, 2910
EcoT38I GRGCYC 3 cut(s) 223, 233, 2761
EgeI GGCGCC 1 cut(s) 86
EheI GGCGCC 1 cut(s) 86
ErhI CCWWGG 4 cut(s) 1620, 2779, 2861, 2910
Esp3I CGTCTC 1 cut(s) 1808
FalI AAGNNNNNCTT 2 cut(s) 1575, 1607
FaqI GGGAC 5 cut(s) 909, 1304, 1411, 1668, 2420
FauI CCCGC 3 cut(s) 2050, 2783, 2877
FbaI TGATCA 1 cut(s) 1504
FblI GTMKAC 2 cut(s) 534, 1192
FokI GGATG 6 cut(s) 127, 1256, 2051, 2177, 2381, 2758
FriOI GRGCYC 3 cut(s) 223, 233, 2761
FspBI CTAG 7 cut(s) 234, 432, 639, 2591, 2799, 2873, 2982
GlaI GCGC 3 cut(s) 86, 291, 1539
GsaI CCCAGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 2 cut(s) 88, 1541
HapII CCGG 9 cut(s) 27, 38, 59, 82, 217, 284, 311, 581, 1488
HgaI GACGC 5 cut(s) 29, 30, 480, 532, 1825
HhaI GCGC 3 cut(s) 87, 292, 1540
Hin1I GRCGYC 5 cut(s) 21, 41, 85, 491, 524
Hin6I GCGC 3 cut(s) 85, 290, 1538
HinP1I GCGC 3 cut(s) 85, 290, 1538
HincII GTYRAC 3 cut(s) 213, 2031, 2067
HindII GTYRAC 3 cut(s) 213, 2031, 2067
HindIII AAGCTT 2 cut(s) 2540, 2585
HpaI GTTAAC 1 cut(s) 2031
HpaII CCGG 9 cut(s) 27, 38, 59, 82, 217, 284, 311, 581, 1488
HphI GGTGA 2 cut(s) 349, 1502
Hpy166II GTNNAC 7 cut(s) 213, 466, 535, 1193, 2031, 2067, 2969
Hpy8I GTNNAC 7 cut(s) 213, 466, 535, 1193, 2031, 2067, 2969
HpyAV CCTTC 9 cut(s) 1528, 1577, 1802, 1938, 2104, 2117, 2148, 2154, 2572
HpyCH4III ACNGT 5 cut(s) 1460, 1772, 1907, 2356, 2501
HpyCH4IV ACGT 5 cut(s) 157, 796, 943, 1645, 2350
HpySE526I ACGT 5 cut(s) 157, 796, 943, 1645, 2350
Hsp92I GRCGYC 5 cut(s) 21, 41, 85, 491, 524
HspAI GCGC 3 cut(s) 85, 290, 1538
KasI GGCGCC 1 cut(s) 84
KroI GCCGGC 2 cut(s) 37, 283
KroNI GCCGGC 2 cut(s) 39, 285
Ksp22I TGATCA 1 cut(s) 1504
KspAI GTTAAC 1 cut(s) 2031
KspI CCGCGG 2 cut(s) 91, 2559
LmnI GCTCC 7 cut(s) 95, 478, 613, 1051, 1069, 2126, 2453
LweI GCATC 7 cut(s) 564, 625, 1651, 2101, 2170, 2438, 2780
MabI ACCWGGT 1 cut(s) 2788
MaeI CTAG 7 cut(s) 234, 432, 639, 2591, 2799, 2873, 2982
MaeII ACGT 5 cut(s) 157, 796, 943, 1645, 2350
MaeIII GTNAC 5 cut(s) 17, 1358, 1907, 2218, 2320
MfeI CAATTG 3 cut(s) 867, 1215, 2720
MflI RGATCY 4 cut(s) 401, 543, 1276, 1756
MhlI GDGCHC 5 cut(s) 100, 223, 233, 587, 2761
MlsI TGGCCA 2 cut(s) 719, 2837
MluNI TGGCCA 2 cut(s) 719, 2837
Mly113I GGCGCC 1 cut(s) 85
MlyI GAGTC 8 cut(s) 47, 511, 869, 1010, 1096, 2066, 2072, 2200
MmeI TCCRAC 8 cut(s) 336, 591, 604, 1304, 1393, 1598, 2640, 2641
Mox20I TGGCCA 2 cut(s) 719, 2837
MroNI GCCGGC 2 cut(s) 37, 283
MroXI GAANNNNTTC 3 cut(s) 566, 2137, 2244
MscI TGGCCA 2 cut(s) 719, 2837
MseI TTAA 9 cut(s) 501, 599, 681, 999, 1350, 1452, 1542, 2030, 2537
MslI CAYNNNNRTG 2 cut(s) 1046, 2843
Msp20I TGGCCA 2 cut(s) 719, 2837
MspA1I CMGCKG 5 cut(s) 90, 266, 932, 2558, 2567
MspI CCGG 9 cut(s) 27, 38, 59, 82, 217, 284, 311, 581, 1488
MspR9I CCNGG 9 cut(s) 82, 217, 218, 311, 582, 1068, 1716, 2790, 2987
MunI CAATTG 3 cut(s) 867, 1215, 2720
Mva1269I GAATGC 1 cut(s) 1634
MvaI CCWGG 4 cut(s) 1068, 1716, 2790, 2987
MvnI CGCG 4 cut(s) 90, 168, 408, 2558
NaeI GCCGGC 2 cut(s) 39, 285
NarI GGCGCC 1 cut(s) 85
NciI CCSGG 5 cut(s) 82, 217, 218, 311, 582
NcoI CCATGG 2 cut(s) 1620, 2910
NgoMIV GCCGGC 2 cut(s) 37, 283
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 3 cut(s) 17, 1358, 1907
NruI TCGCGA 1 cut(s) 168
NspI RCATGY 4 cut(s) 1027, 1166, 2699, 2809
NspV TTCGAA 1 cut(s) 2933
PaeI GCATGC 1 cut(s) 2809
PagI TCATGA 3 cut(s) 558, 1834, 1981
PciI ACATGT 2 cut(s) 1162, 2695
PctI GAATGC 1 cut(s) 1634
PdiI GCCGGC 2 cut(s) 39, 285
PdmI GAANNNNTTC 3 cut(s) 566, 2137, 2244
PfeI GAWTC 4 cut(s) 752, 2042, 2114, 2387
PfoI TCCNGGA 1 cut(s) 1714
PinAI ACCGGT 1 cut(s) 1487
PleI GAGTC 8 cut(s) 47, 511, 868, 1010, 1096, 2066, 2071, 2200
PluTI GGCGCC 1 cut(s) 88
PpsI GAGTC 8 cut(s) 47, 511, 868, 1010, 1096, 2066, 2071, 2200
Ppu21I YACGTR 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 1655
PscI ACATGT 2 cut(s) 1162, 2695
PsiI TTATAA 1 cut(s) 1134
Psp1406I AACGTT 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 1655
Psp6I CCWGG 4 cut(s) 1066, 1714, 2788, 2985
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 4 cut(s) 1066, 1714, 2788, 2985
PspOMI GGGCCC 2 cut(s) 219, 229
PspPPI RGGWCCY 1 cut(s) 1655
PstI CTGCAG 3 cut(s) 1276, 2551, 2575
PstNI CAGNNNCTG 4 cut(s) 266, 710, 2317, 2570
PsuI RGATCY 4 cut(s) 401, 543, 1276, 1756
PvuII CAGCTG 2 cut(s) 266, 932
RruI TCGCGA 1 cut(s) 168
RsaI GTAC 5 cut(s) 651, 911, 2353, 2361, 2503
RsaNI GTAC 5 cut(s) 650, 910, 2352, 2360, 2502
RseI CAYNNNNRTG 2 cut(s) 1046, 2843
SacII CCGCGG 2 cut(s) 91, 2559
SaqAI TTAA 9 cut(s) 501, 599, 681, 999, 1350, 1452, 1542, 2030, 2537
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 8 cut(s) 47, 511, 869, 1010, 1096, 2066, 2072, 2200
ScrFI CCNGG 9 cut(s) 82, 217, 218, 311, 582, 1068, 1716, 2790, 2987
SduI GDGCHC 5 cut(s) 100, 223, 233, 587, 2761
SexAI ACCWGGT 1 cut(s) 2788
SfaNI GCATC 7 cut(s) 564, 625, 1651, 2101, 2170, 2438, 2780
SfcI CTRYAG 5 cut(s) 1272, 2148, 2292, 2547, 2571
SfoI GGCGCC 1 cut(s) 86
Sfr303I CCGCGG 2 cut(s) 91, 2559
SfuI TTCGAA 1 cut(s) 2933
SgrBI CCGCGG 2 cut(s) 91, 2559
SinI GGWCC 4 cut(s) 664, 896, 1655, 1787
SmaI CCCGGG 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 1046, 2843
SphI GCATGC 1 cut(s) 2809
SspDI GGCGCC 1 cut(s) 84
SspMI CTAG 7 cut(s) 234, 432, 639, 2591, 2799, 2873, 2982
StyD4I CCNGG 9 cut(s) 80, 215, 216, 309, 580, 1066, 1714, 2788, 2985
StyI CCWWGG 4 cut(s) 1620, 2779, 2861, 2910
TaaI ACNGT 5 cut(s) 1460, 1772, 1907, 2356, 2501
TaiI ACGT 5 cut(s) 160, 799, 946, 1648, 2353
TaqI TCGA 3 cut(s) 1014, 2235, 2933
TatI WGTACW 1 cut(s) 649
TauI GCSGC 7 cut(s) 26, 90, 93, 129, 290, 304, 2570
TfiI GAWTC 4 cut(s) 752, 2042, 2114, 2387
Tru1I TTAA 9 cut(s) 501, 599, 681, 999, 1350, 1452, 1542, 2030, 2537
Tru9I TTAA 9 cut(s) 501, 599, 681, 999, 1350, 1452, 1542, 2030, 2537
TscAI CASTG 8 cut(s) 674, 727, 994, 1536, 1912, 2322, 2361, 2580
TseFI GTSAC 3 cut(s) 17, 1358, 1907
Tsp45I GTSAC 3 cut(s) 17, 1358, 1907
TspGWI ACGGA 2 cut(s) 536, 2519
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 8 cut(s) 674, 727, 994, 1536, 1912, 2322, 2361, 2580
VpaK11BI GGWCC 4 cut(s) 664, 896, 1655, 1787
XapI RAATTY 5 cut(s) 566, 629, 656, 1010, 2434
XbaI TCTAGA 1 cut(s) 2798
XceI RCATGY 4 cut(s) 1027, 1166, 2699, 2809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1873
XmaI CCCGGG 1 cut(s) 216
XmiI GTMKAC 2 cut(s) 534, 1192
XmnI GAANNNNTTC 3 cut(s) 566, 2137, 2244
XspI CTAG 7 cut(s) 234, 432, 639, 2591, 2799, 2873, 2982
ZrmI AGTACT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.