RchiOBHm_Chr6g0263951
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006872
Physical Location & Seq
Forward (+)
19074116 .. 19079785
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23673

Sequence Viewer

Length: 3051 bp
ATGTTGCAAAGCCCAAACCCCGATCCGCATCCAAACCCATTCCCCCCATCCATGGAAGAAAAACGCGGAGACGCCGGAACTCAGCCTCCGGCTAATGCCGCCGACTCTCCGGCCTCCGAGCCTACTTCTTCGAGACGCCGCGCCGGAGGCCAGAAGCGAAAGGCCAGCAGCCTCGGCGGCTCCGGCTCTTCATCAACACCGTCGAAACGCTTGACTCGCGAGAAGGCTTCGCTTTCTCACCCTCCGATCCACAACGGCCCGTTGACGAGGGCCCGCCAGGGGCCCAATAACCATGCGTCGGCCTCAGCCGCGGCCGTGAAGCCTGCTGCTCAGACGAAGCGGCCGGAGCCGTCGTCGGTGGAGGCGGAGCGGGCTAAAAGGGAGAGCGAGTTGGAGGCTTTGGAGGCTTCTATGGAAGCTGAGTTTGAAGCCATTAGATCTCGCGATGCCAATGCTCATGTGGTTCCCAGTCATTGTGGTTGGTTTTCATGGACAAAGGTTCACGCCATTGAGGAGCGTATGTTGCCGTCTTTCTTTAATGGGAAGTCTGATGCTCGAACTCCCGATACATACCTGGAGATACGCAATTGTATTATGAAAAAATTCCATGTTAATCCGGGAACATTGGTTGAACTGAAGGATATGTTGGAGCTTGAAGTCGGAGACTTCGATTCAAGACAAGAAGTAATGGAATTTTTGGACCACTGGGGTTTGATAAATTTCCACCCTTTCCCACCAACAGGTTCTACTGTTGCAAATGTCAACAGTGATGAGGTGACAGAAAGGGATTCTTTGGTAGATAAGTTGTATCACTTTGAAGCACTAGAATCACGATCATCAGTGGTTCCTAAGACTAACTTATTTACTCCAACTGTGCCATCTGGTCTGTTCCCAGAGTCTACATTTGCTGAAGAATTGGTGAGGCCTGAGGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCAAACGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGCTCTGATTGCTTTAACAATGGGAAATTCGACTCGGGTATGTCTTCATCAGATTTTATTCTTATGGAGCCTGCTGAGGCTCCTGGGGTAAGTGGTGGGAAGTGGACAGATCAGGAGACCCTCCTTCTCCTTGAAGCATTAGAATTATATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTCCTAGATCGTGATGATGATATTGATGCCATAGCCAAAGAAACTGCAGATCCAACTTCAACTAACAATGATTTATTGCCCCCCAAAGATGCCCCTGAAACAACAGAGAATAAGACAAGTGCTAATGAGAGTGACCCTCAAACTTCCCCGATGGAAATTTCAAAAGAAGAAGCAAGTGAGGTTAAAGTTGGGGAGGATACTTCAAGGCCAGAAGATGAAAATGAAGTCAAAGTTGGTCAGGACACCTCAAAGTTGGAAGATACTGGTGATTTGAAAATTGATCAGGAAACAGATGAGAACCTTGCATTGAAGGCTCTTAAAGAAGCCTTTGAAGTTGTTGGTTATCCTCAAACACCTGAAAGTCAACTCTCATTTGCAGATGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTGGCACGGTTGGTGGGACCTGATCATGCCATTGCCTCGGCACATAATTCTTTGAAATCCATATCTGCAGATTCTGCTGGCATTGAGCTGGCTTCGAGGCACTGCTTTATTTTGGAAGATCCACCAAATGACAGAAAGGAACAAGCTAGTCATGATAGTGTTGCTGCTGAAAGGGAAGTGCAGAGTGAGAAAGTCGATGAAGAAAATAGTCATAAAGAGGATAACTCCACCTCAGGTTTGGAAGATAGAGGTGTATCAAATGATAACAATGACAAGAAACTTGAAGAAGTTACTCCTGAAGAAAAGTCACAATCTACAAAAGAACAAGATGACAGGGTTTCTCATGAGGAAGTAGGAACTGATAAATTGAACAAGTCAAACAACTCAGAGTTACCAAATGACCAACCACCAACTTTGGGGGAGTCAGATAATTCAAAAGTTGAGACACCACCAAGTTCAGTAAAGGAGTCGGGAGAGGGAACTTCAGTAGGACAGCCTTCTGAAACCATAGAGACACCAATGGATGTGGATATGTCTGACTCCAATCCCTCAACGAAGACGGAGCCTCAGCAACCAGTTACATCAAATTCAGCTGAGGAACCTTCTCAGTCTACAGAGGCATCAAAAGAAGTGGATGTATCTAATGCTCTGCCTTCAGAAAGAGATGAGCCTCCACCACCAGTTACTGAAGAACCCCCTCAACCTACAGAAACATCAAAGGATGTTCTTATGGTGTGTGACTCTCAGCCCCCACAAGAGAATGAGCCTTCCCAACCAGTTGAAAACACTGCAAGTGAGGATCAGACTGATGATAGTAAACACGAGAAGCATGACTGTACAGACCCAAAAAATGATAAAAAGCAAGAGACAAAAGGCGAACAGAAGATTGATAAAATAAAGCAAGCTGCAGTTTCTGCAGTCTCAGCAGCTGCTGTGAAGGCAAAACTTCTAGCAGAACAGGAAGAAGATCAAATTCGACAGCTTGCAGCAATGCTGATAGAGAAGCAGTTGCATAAGTTGGAAGCCAAGTTAGGTTTCTTTCATGAGATGGAAAGTGTTGTGATGAGGGTAAAAGAGCAATTGGATAGGTCAAGACAGAAGCTCTACCATGAGCGGGCACAGATAATTGCTGCCCGACTTGGCTTACCAGGTTCCTCATCTAGAGGAATGCCATCTGCGATGCCTACCAATAGAATGGCCATGAATGCTGCAAACTCAGTTCCAAGGCCCCCACTTATGATGACCTCTCAAAGGCCACCCATGTCGAGACCCACAGGGGCGGTGGCTTCGACCCCTTTAAACCAATTTTCGTCCTCAGGAAGTGCGATTCGGCCTCCCAGTCAGGACAGCCTTTCTTCTATTGGGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

1016

Amino Acids

111.03

Weight (kDa)

4.78

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 163 - 241 1.8e-20 SWIRM domain
ZZ PF00569 315 - 350 1.2e-08 Zinc finger, ZZ type
Myb_DNA-binding PF00249 373 - 415 4.5e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 375 - 415 1.3e-06 Myb-like DNA-binding domain
SWIRM-assoc_1 PF16495 864 - 939 1.4e-23 SWIRM-associated region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 370, 2791
AccI GTMKAC 2 cut(s) 899, 2288
AccII CGCG 5 cut(s) 66, 141, 219, 311, 444
AclWI GGATC 5 cut(s) 17, 241, 1307, 1790, 2484
AcoI YGGCCR 3 cut(s) 312, 341, 2874
AcsI RAATTY 7 cut(s) 602, 692, 718, 1046, 1419, 2263, 2649
AcuI CTGAAG 6 cut(s) 656, 930, 1995, 2145, 2316, 2385
AcyI GRCGYC 2 cut(s) 72, 136
AfaI GTAC 2 cut(s) 947, 2515
AfiI CCNNNNNNNGG 9 cut(s) 52, 279, 298, 740, 1003, 1660, 2093, 2791, 2928
AflIII ACRYGT 1 cut(s) 1198
AjnI CCWGG 5 cut(s) 276, 573, 1102, 1677, 2824
AjuI GAANNNNNNNTTGG 6 cut(s) 629, 661, 1479, 1511, 2696, 2728
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 9 cut(s) 63, 127, 657, 1130, 2114, 2183, 2537, 2602, 2938
AlwI GGATC 5 cut(s) 17, 241, 1307, 1790, 2484
AlwNI CAGNNNCTG 5 cut(s) 1751, 2363, 2591, 2606, 2609
Ama87I CYCGRG 1 cut(s) 1054
ApaI GGGCCC 2 cut(s) 274, 285
ApoI RAATTY 7 cut(s) 602, 692, 718, 1046, 1419, 2263, 2649
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 9 cut(s) 257, 270, 271, 281, 282, 700, 932, 1694, 2904
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 4 cut(s) 230, 787, 931, 1541
AvaI CYCGRG 1 cut(s) 1054
AvaII GGWCC 2 cut(s) 700, 1694
AxyI CCTNAGG 3 cut(s) 927, 1909, 2992
BaeGI GKGCMC 3 cut(s) 274, 285, 2797
BalI TGGCCA 1 cut(s) 2876
BanII GRGCYC 2 cut(s) 274, 285
BauI CACGAG 1 cut(s) 2498
BbsI GAAGAC 2 cut(s) 1056, 2240
Bbv12I GWGCWC 1 cut(s) 1025
BbvCI CCTCAGC 4 cut(s) 304, 1095, 2244, 2271
BccI CCATC 5 cut(s) 55, 886, 1408, 2719, 2857
BceAI ACGGC 4 cut(s) 271, 299, 334, 511
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 5 cut(s) 278, 575, 1104, 1679, 2826
BciVI GTATCC 2 cut(s) 1252, 1453
BclI TGATCA 2 cut(s) 1543, 1699
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 9 cut(s) 63, 127, 657, 1130, 2114, 2183, 2537, 2602, 2938
BfaI CTAG 5 cut(s) 824, 1268, 1824, 2627, 2838
BfmI CTRYAG 6 cut(s) 1308, 1743, 2289, 2382, 2583, 2592
BfuI GTATCC 2 cut(s) 1252, 1453
BglI GCCNNNNNGGC 2 cut(s) 177, 931
BglII AGATCT 1 cut(s) 437
Bme1390I CCNGG 6 cut(s) 278, 575, 618, 1104, 1679, 2826
Bme18I GGWCC 2 cut(s) 700, 1694
BmeT110I CYCGRG 1 cut(s) 1054
BmgT120I GGNCC 9 cut(s) 257, 270, 271, 281, 282, 700, 932, 1694, 2904
BmrFI CCNGG 6 cut(s) 278, 575, 618, 1104, 1679, 2826
BmrI ACTGGG 3 cut(s) 462, 715, 3009
BmsI GCATC 7 cut(s) 37, 436, 541, 1279, 1342, 2306, 2847
BmuI ACTGGG 3 cut(s) 462, 715, 3009
BpiI GAAGAC 2 cut(s) 1056, 2240
BplI GAGNNNNNCTC 4 cut(s) 1384, 1416, 1886, 1918
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 4 cut(s) 304, 1095, 2244, 2271
BpuMI CCSGG 1 cut(s) 618
BsaBI GATNNNNATC 2 cut(s) 27, 1014
BsaHI GRCGYC 2 cut(s) 72, 136
BsaI GGTCTC 2 cut(s) 1130, 2938
BsaJI CCNNGG 8 cut(s) 51, 172, 277, 309, 1103, 1659, 1713, 2900
BsaXI ACNNNNNCTCC 8 cut(s) 70, 100, 338, 368, 374, 404, 506, 536
Bsc4I CCNNNNNNNGG 9 cut(s) 52, 279, 298, 740, 1003, 1660, 2093, 2791, 2928
Bse1I ACTGG 8 cut(s) 468, 710, 1184, 1531, 2252, 2357, 2453, 3015
Bse21I CCTNAGG 3 cut(s) 927, 1909, 2992
Bse3DI GCAATG 4 cut(s) 949, 991, 1707, 2673
Bse8I GATNNNNATC 2 cut(s) 27, 1014
BseBI CCWGG 5 cut(s) 278, 575, 1104, 1679, 2826
BseDI CCNNGG 8 cut(s) 51, 172, 277, 309, 1103, 1659, 1713, 2900
BseGI GGATG 5 cut(s) 28, 47, 2206, 2317, 2404
BseJI GATNNNNATC 2 cut(s) 27, 1014
BseLI CCNNNNNNNGG 9 cut(s) 52, 279, 298, 740, 1003, 1660, 2093, 2791, 2928
BseMI GCAATG 4 cut(s) 949, 991, 1707, 2673
BseNI ACTGG 8 cut(s) 468, 710, 1184, 1531, 2252, 2357, 2453, 3015
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 3 cut(s) 274, 285, 2797
BseX3I CGGCCG 2 cut(s) 312, 341
BsgI GTGCAG 1 cut(s) 1877
Bsh1236I CGCG 5 cut(s) 66, 141, 219, 311, 444
Bsh1285I CGRYCG 2 cut(s) 315, 344
BsiEI CGRYCG 2 cut(s) 315, 344
BsiHKAI GWGCWC 1 cut(s) 1025
BsiHKCI CYCGRG 1 cut(s) 1054
BsiSI CCGG 7 cut(s) 75, 89, 110, 144, 183, 344, 617
BslFI GGGAC 1 cut(s) 1707
BslI CCNNNNNNNGG 9 cut(s) 52, 279, 298, 740, 1003, 1660, 2093, 2791, 2928
BsmAI GTCTC 9 cut(s) 63, 127, 657, 1130, 2114, 2183, 2537, 2602, 2938
BsmBI CGTCTC 2 cut(s) 63, 127
BsmFI GGGAC 1 cut(s) 1707
BsmI GAATGC 3 cut(s) 1673, 2850, 2887
Bso31I GGTCTC 2 cut(s) 1130, 2938
BsoBI CYCGRG 1 cut(s) 1054
Bsp120I GGGCCC 2 cut(s) 270, 281
Bsp1286I GDGCHC 4 cut(s) 274, 285, 1025, 2797
Bsp1407I TGTACA 1 cut(s) 2513
Bsp19I CCATGG 2 cut(s) 51, 1659
Bsp68I TCGCGA 2 cut(s) 219, 444
BspFNI CGCG 5 cut(s) 66, 141, 219, 311, 444
BspHI TCATGA 3 cut(s) 1828, 2020, 2719
BspMAI CTGCAG 4 cut(s) 1312, 1747, 2587, 2596
BspPI GGATC 5 cut(s) 17, 241, 1307, 1790, 2484
BspQI GCTCTTC 1 cut(s) 193
BspTNI GGTCTC 2 cut(s) 1130, 2938
BsrBI CCGCTC 2 cut(s) 370, 2791
BsrDI GCAATG 4 cut(s) 949, 991, 1707, 2673
BsrGI TGTACA 1 cut(s) 2513
BsrI ACTGG 8 cut(s) 468, 710, 1184, 1531, 2252, 2357, 2453, 3015
BssECI CCNNGG 8 cut(s) 51, 172, 277, 309, 1103, 1659, 1713, 2900
BssNI GRCGYC 2 cut(s) 72, 136
BssSI CACGAG 1 cut(s) 2498
BssT1I CCWWGG 3 cut(s) 51, 1659, 2900
Bst2BI CACGAG 1 cut(s) 2498
Bst2UI CCWGG 5 cut(s) 278, 575, 1104, 1679, 2826
Bst4CI ACNGT 6 cut(s) 201, 751, 767, 874, 1686, 2513
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 2 cut(s) 72, 136
BstAPI GCANNNNNTGC 2 cut(s) 1751, 2591
BstAUI TGTACA 1 cut(s) 2513
BstDSI CCRYGG 3 cut(s) 51, 309, 1659
BstENI CCTNNNNNAGG 1 cut(s) 2926
BstF5I GGATG 5 cut(s) 28, 47, 2206, 2317, 2404
BstFNI CGCG 5 cut(s) 66, 141, 219, 311, 444
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 9 cut(s) 63, 127, 657, 1130, 2114, 2183, 2537, 2602, 2938
BstMCI CGRYCG 2 cut(s) 315, 344
BstNI CCWGG 5 cut(s) 278, 575, 1104, 1679, 2826
BstNSI RCATGY 1 cut(s) 1202
BstSCI CCNGG 6 cut(s) 276, 573, 616, 1102, 1677, 2824
BstSFI CTRYAG 6 cut(s) 1308, 1743, 2289, 2382, 2583, 2592
BstSLI GKGCMC 3 cut(s) 274, 285, 2797
BstUI CGCG 5 cut(s) 66, 141, 219, 311, 444
BstV2I GAAGAC 2 cut(s) 1056, 2240
BstX2I RGATCY 3 cut(s) 437, 1312, 1795
BstXI CCANNNNNNTGG 2 cut(s) 1666, 2872
BstYI RGATCY 3 cut(s) 437, 1312, 1795
BstZI CGGCCG 2 cut(s) 312, 341
Bsu36I CCTNAGG 3 cut(s) 927, 1909, 2992
BsuI GTATCC 2 cut(s) 1252, 1453
BtgI CCRYGG 3 cut(s) 51, 309, 1659
BtgZI GCGATG 2 cut(s) 459, 2870
BtsCI GGATG 5 cut(s) 28, 47, 2206, 2317, 2404
BtsI GCAGTG 2 cut(s) 1777, 2463
BtsIMutI CAGTG 6 cut(s) 703, 772, 846, 1229, 1777, 2463
BtuMI TCGCGA 2 cut(s) 219, 444
CaiI CAGNNNCTG 5 cut(s) 1751, 2363, 2591, 2606, 2609
CciI TCATGA 3 cut(s) 1828, 2020, 2719
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 9 cut(s) 257, 270, 271, 281, 282, 700, 932, 1694, 2904
Cfr42I CCGCGG 1 cut(s) 312
CseI GACGC 3 cut(s) 80, 144, 285
CsiI ACCWGGT 1 cut(s) 2824
Csp6I GTAC 2 cut(s) 946, 2514
CspCI CAANNNNNGTGG 6 cut(s) 2073, 2108, 2184, 2219, 2289, 2324
CviQI GTAC 2 cut(s) 946, 2514
DraI TTTAAA 1 cut(s) 2976
EaeI YGGCCR 3 cut(s) 312, 341, 2874
EagI CGGCCG 2 cut(s) 312, 341
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 380
EclXI CGGCCG 2 cut(s) 312, 341
Eco130I CCWWGG 3 cut(s) 51, 1659, 2900
Eco147I AGGCCT 1 cut(s) 925
Eco24I GRGCYC 2 cut(s) 274, 285
Eco31I GGTCTC 2 cut(s) 1130, 2938
Eco47I GGWCC 2 cut(s) 700, 1694
Eco52I CGGCCG 2 cut(s) 312, 341
Eco57I CTGAAG 6 cut(s) 656, 930, 1995, 2145, 2316, 2385
Eco81I CCTNAGG 3 cut(s) 927, 1909, 2992
Eco88I CYCGRG 1 cut(s) 1054
EcoNI CCTNNNNNAGG 1 cut(s) 2926
EcoO109I RGGNCCY 4 cut(s) 270, 281, 1694, 2904
EcoRII CCWGG 5 cut(s) 276, 573, 1102, 1677, 2824
EcoT14I CCWWGG 3 cut(s) 51, 1659, 2900
EcoT38I GRGCYC 2 cut(s) 274, 285
ErhI CCWWGG 3 cut(s) 51, 1659, 2900
Esp3I CGTCTC 2 cut(s) 63, 127
FalI AAGNNNNNCTT 4 cut(s) 775, 807, 842, 874
FaqI GGGAC 1 cut(s) 1707
FauI CCCGC 3 cut(s) 281, 363, 2784
FbaI TGATCA 2 cut(s) 1543, 1699
FblI GTMKAC 2 cut(s) 899, 2288
FokI GGATG 5 cut(s) 15, 34, 2213, 2324, 2411
FriOI GRGCYC 2 cut(s) 274, 285
FspBI CTAG 5 cut(s) 824, 1268, 1824, 2627, 2838
GlaI GCGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 596
HapII CCGG 7 cut(s) 75, 89, 110, 144, 183, 344, 617
HgaI GACGC 3 cut(s) 80, 144, 285
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 2 cut(s) 72, 136
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 3 cut(s) 264, 763, 1628
HindII GTYRAC 3 cut(s) 264, 763, 1628
HpaII CCGG 7 cut(s) 75, 89, 110, 144, 183, 344, 617
HphI GGTGA 4 cut(s) 230, 787, 931, 1541
Hpy166II GTNNAC 8 cut(s) 264, 502, 763, 900, 1125, 1628, 2289, 2495
Hpy8I GTNNAC 8 cut(s) 264, 502, 763, 900, 1125, 1628, 2289, 2495
Hpy99I CGWCG 4 cut(s) 205, 301, 355, 358
HpyCH4III ACNGT 6 cut(s) 201, 751, 767, 874, 1686, 2513
Hsp92I GRCGYC 2 cut(s) 72, 136
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 2 cut(s) 1543, 1699
KspI CCGCGG 1 cut(s) 312
LguI GCTCTTC 1 cut(s) 193
LmnI GCTCC 8 cut(s) 185, 346, 367, 514, 649, 1087, 1105, 2239
LweI GCATC 7 cut(s) 37, 436, 541, 1279, 1342, 2306, 2847
MabI ACCWGGT 1 cut(s) 2824
MaeI CTAG 5 cut(s) 824, 1268, 1824, 2627, 2838
MaeIII GTNAC 8 cut(s) 775, 1394, 1966, 1983, 2067, 2254, 2359, 2414
MbiI CCGCTC 2 cut(s) 370, 2791
MfeI CAATTG 3 cut(s) 586, 1251, 2756
MflI RGATCY 3 cut(s) 437, 1312, 1795
MhlI GDGCHC 4 cut(s) 274, 285, 1025, 2797
MlsI TGGCCA 1 cut(s) 2876
MluNI TGGCCA 1 cut(s) 2876
MlyI GAGTC 8 cut(s) 98, 208, 905, 1046, 2108, 2153, 2210, 2411
MmeI TCCRAC 7 cut(s) 372, 627, 640, 893, 1340, 1497, 2676
Mox20I TGGCCA 1 cut(s) 2876
MroXI GAANNNNTTC 1 cut(s) 602
MscI TGGCCA 1 cut(s) 2876
MseI TTAA 6 cut(s) 537, 612, 1035, 1446, 1581, 2975
MslI CAYNNNNRTG 1 cut(s) 1833
Msp20I TGGCCA 1 cut(s) 2876
MspA1I CMGCKG 5 cut(s) 311, 938, 968, 2270, 2606
MspI CCGG 7 cut(s) 75, 89, 110, 144, 183, 344, 617
MspR9I CCNGG 6 cut(s) 278, 575, 618, 1104, 1679, 2826
MunI CAATTG 3 cut(s) 586, 1251, 2756
Mva1269I GAATGC 3 cut(s) 1673, 2850, 2887
MvaI CCWGG 5 cut(s) 278, 575, 1104, 1679, 2826
MvnI CGCG 5 cut(s) 66, 141, 219, 311, 444
NciI CCSGG 1 cut(s) 618
NcoI CCATGG 2 cut(s) 51, 1659
NmeAIII GCCGAG 2 cut(s) 153, 1694
NmuCI GTSAC 4 cut(s) 775, 1394, 1983, 2414
NruI TCGCGA 2 cut(s) 219, 444
NspI RCATGY 1 cut(s) 1202
PagI TCATGA 3 cut(s) 1828, 2020, 2719
PceI AGGCCT 1 cut(s) 925
PciI ACATGT 1 cut(s) 1198
PciSI GCTCTTC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PctI GAATGC 3 cut(s) 1673, 2850, 2887
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 5 cut(s) 671, 788, 827, 1748, 3004
PfoI TCCNGGA 1 cut(s) 616
PleI GAGTC 8 cut(s) 98, 208, 904, 1046, 2107, 2152, 2210, 2411
PpsI GAGTC 8 cut(s) 98, 208, 904, 1046, 2107, 2152, 2210, 2411
PpuMI RGGWCCY 1 cut(s) 1694
PscI ACATGT 1 cut(s) 1198
Psp5II RGGWCCY 1 cut(s) 1694
Psp6I CCWGG 5 cut(s) 276, 573, 1102, 1677, 2824
PspGI CCWGG 5 cut(s) 276, 573, 1102, 1677, 2824
PspOMI GGGCCC 2 cut(s) 270, 281
PspPI GGNCC 9 cut(s) 257, 270, 271, 281, 282, 700, 932, 1694, 2904
PspPPI RGGWCCY 1 cut(s) 1694
PsrI GAACNNNNNNTAC 2 cut(s) 550, 582
PstI CTGCAG 4 cut(s) 1312, 1747, 2587, 2596
PstNI CAGNNNCTG 5 cut(s) 1751, 2363, 2591, 2606, 2609
PsuI RGATCY 3 cut(s) 437, 1312, 1795
PvuII CAGCTG 4 cut(s) 938, 968, 2270, 2606
RruI TCGCGA 2 cut(s) 219, 444
RsaI GTAC 2 cut(s) 947, 2515
RsaNI GTAC 2 cut(s) 946, 2514
RseI CAYNNNNRTG 1 cut(s) 1833
SacII CCGCGG 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 193
SaqAI TTAA 6 cut(s) 537, 612, 1035, 1446, 1581, 2975
Sau96I GGNCC 9 cut(s) 257, 270, 271, 281, 282, 700, 932, 1694, 2904
SchI GAGTC 8 cut(s) 98, 208, 905, 1046, 2108, 2153, 2210, 2411
ScrFI CCNGG 6 cut(s) 278, 575, 618, 1104, 1679, 2826
SduI GDGCHC 4 cut(s) 274, 285, 1025, 2797
SexAI ACCWGGT 1 cut(s) 2824
SfaNI GCATC 7 cut(s) 37, 436, 541, 1279, 1342, 2306, 2847
SfcI CTRYAG 6 cut(s) 1308, 1743, 2289, 2382, 2583, 2592
SfiI GGCCNNNNNGGCC 1 cut(s) 931
Sfr303I CCGCGG 1 cut(s) 312
SgrBI CCGCGG 1 cut(s) 312
SinI GGWCC 2 cut(s) 700, 1694
SmiMI CAYNNNNRTG 1 cut(s) 1833
SseBI AGGCCT 1 cut(s) 925
SspMI CTAG 5 cut(s) 824, 1268, 1824, 2627, 2838
StuI AGGCCT 1 cut(s) 925
StyD4I CCNGG 6 cut(s) 276, 573, 616, 1102, 1677, 2824
StyI CCWWGG 3 cut(s) 51, 1659, 2900
TaaI ACNGT 6 cut(s) 201, 751, 767, 874, 1686, 2513
TatI WGTACW 1 cut(s) 2513
TauI GCSGC 6 cut(s) 101, 141, 180, 311, 314, 343
TfiI GAWTC 5 cut(s) 671, 788, 827, 1748, 3004
Tru1I TTAA 6 cut(s) 537, 612, 1035, 1446, 1581, 2975
Tru9I TTAA 6 cut(s) 537, 612, 1035, 1446, 1581, 2975
TscAI CASTG 6 cut(s) 710, 772, 846, 1229, 1784, 2470
TseFI GTSAC 4 cut(s) 775, 1394, 1983, 2414
Tsp45I GTSAC 4 cut(s) 775, 1394, 1983, 2414
TspDTI ATGAA 9 cut(s) 180, 477, 611, 1056, 1494, 1500, 1890, 2708, 2894
TspGWI ACGGA 1 cut(s) 2252
TspRI CASTG 6 cut(s) 710, 772, 846, 1229, 1784, 2470
VpaK11BI GGWCC 2 cut(s) 700, 1694
XagI CCTNNNNNAGG 1 cut(s) 2926
XapI RAATTY 7 cut(s) 602, 692, 718, 1046, 1419, 2263, 2649
XbaI TCTAGA 1 cut(s) 2837
XceI RCATGY 1 cut(s) 1202
XcmI CCANNNNNNNNNTGG 3 cut(s) 457, 1912, 2956
XmiI GTMKAC 2 cut(s) 899, 2288
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 5 cut(s) 824, 1268, 1824, 2627, 2838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.