Rorug06G0007000
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006872
Physical Location & Seq
Forward (+)
1036298 .. 1038459
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0007000.1

Sequence Viewer

Length: 720 bp
ATGGATATACACAAAGGAAGCAAGGAGCATGCTTCGTCAGACTCCCTTTTACAATGGGGCCAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCACATTCCTTTGGTCTTGAGGCTGCAATCCAAGCTCGCATAGTCTCTGGTCCTGAAGATCTCCAAACTTTTGTAATTCATCATTTAGAGAATACTGCAAGCTTACTCCTTCCTTTTGTGTATTCTACAACAATATCGCCTGATTTGGAGAGTTTGCGTAGACATGACAAGATATTGGACGCAATGCTAACTAATGAAGTGGGTAGAAAGGCATCAATTGCACAAGGGTCTGCGCTGATGCGAGTGGCTGCAGCTGTTTATTCGGAAATACCATCTCTTAAATCTATGAGGGAAACTTCTTTGAGTAATGGTGTTGTTTCTTTTCACCATGCTCCTATATTTGGGCTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTCGGGCCCCTTGGTGCTGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCCGTTGAGGAAGCATGCCAAACTGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTCTCTAGACTGTTCTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

239

Amino Acids

26.07

Weight (kDa)

6.1

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 49 - 196 3e-23 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 2 cut(s) 177, 621
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 95, 443
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 6 cut(s) 137, 204, 356, 494, 605, 690
AluI AGCT 6 cut(s) 137, 204, 356, 494, 605, 690
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 2 cut(s) 58, 554
ApaI GGGCCC 1 cut(s) 558
ApeKI GCWGC 5 cut(s) 125, 350, 353, 530, 566
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 5 cut(s) 58, 152, 554, 555, 625
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 2 cut(s) 152, 625
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 1 cut(s) 558
BbvI GCAGC 5 cut(s) 112, 337, 365, 517, 553
BccI CCATC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 351
BglII AGATCT 1 cut(s) 160
BisI GCNGC 5 cut(s) 126, 351, 354, 531, 567
BlsI GCNGC 5 cut(s) 127, 352, 355, 532, 568
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 2 cut(s) 152, 625
BmgT120I GGNCC 5 cut(s) 58, 152, 554, 555, 625
BmiI GGNNCC 3 cut(s) 59, 556, 557
BmsI GCATC 2 cut(s) 323, 330
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 443
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 95, 443
BseMI GCAATG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 5 cut(s) 112, 337, 365, 517, 553
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 2 cut(s) 60, 556
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 95, 443
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 2 cut(s) 60, 556
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 2 cut(s) 60, 556
BspLI GGNNCC 3 cut(s) 59, 556, 557
BspMAI CTGCAG 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 559
Bst4CI ACNGT 3 cut(s) 629, 655, 708
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 30, 139, 202, 646
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 134, 320
BstNSI RCATGY 2 cut(s) 32, 648
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 5 cut(s) 112, 337, 365, 517, 553
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 2 cut(s) 60, 556
Cac8I GCNNGC 4 cut(s) 30, 139, 202, 646
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 58, 152, 554, 555, 625
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 5 cut(s) 29, 266, 431, 499, 645
CviQI GTAC 1 cut(s) 480
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 558
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 152, 625
Eco57I CTGAAG 2 cut(s) 177, 621
EcoO109I RGGNCCY 1 cut(s) 555
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 5 cut(s) 32, 269, 434, 502, 648
FaqI GGGAC 1 cut(s) 615
FatI CATG 5 cut(s) 28, 265, 430, 498, 644
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 5 cut(s) 126, 351, 354, 531, 567
FspBI CTAG 1 cut(s) 702
GlaI GCGC 1 cut(s) 336
GluI GCNGC 5 cut(s) 126, 351, 354, 531, 567
HaeIII GGCC 2 cut(s) 60, 556
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 32, 269, 434, 502, 648
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 3 cut(s) 41, 77, 613
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 40, 367, 601
Hpy188III TCNNGA 4 cut(s) 119, 155, 702, 717
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 221, 616
HpyCH4III ACNGT 3 cut(s) 629, 655, 708
HpyCH4V TGCA 8 cut(s) 104, 128, 200, 323, 353, 533, 577, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 320
Hsp92II CATG 5 cut(s) 32, 269, 434, 502, 648
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 25, 439, 595
LpnPI CCDG 6 cut(s) 106, 135, 168, 255, 662, 707
Lsp1109I GCAGC 5 cut(s) 112, 337, 365, 517, 553
LweI GCATC 2 cut(s) 323, 330
MaeI CTAG 1 cut(s) 702
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 170
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 3 cut(s) 177, 318, 544
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 4 cut(s) 95, 115, 384, 631
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 134, 320
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 32, 269, 434, 502, 648
NlaIV GGNNCC 3 cut(s) 59, 556, 557
NspI RCATGY 2 cut(s) 32, 648
PaeI GCATGC 2 cut(s) 32, 648
PfeI GAWTC 2 cut(s) 77, 613
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 5 cut(s) 127, 352, 355, 532, 568
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 59, 556, 557
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 5 cut(s) 58, 152, 554, 555, 625
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 126, 351, 354, 531, 567
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 5 cut(s) 58, 152, 554, 555, 625
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 558
SetI ASST 7 cut(s) 139, 206, 358, 496, 607, 692, 696
SfaNI GCATC 2 cut(s) 323, 330
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 2 cut(s) 152, 625
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 2 cut(s) 32, 648
Sse9I AATT 3 cut(s) 177, 318, 544
SspMI CTAG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 3 cut(s) 629, 655, 708
TasI AATT 3 cut(s) 177, 318, 544
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 2 cut(s) 77, 613
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseI GCWGC 5 cut(s) 125, 350, 353, 530, 566
TspDTI ATGAA 3 cut(s) 170, 312, 487
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 152, 625
XapI RAATTY 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 701
XceI RCATGY 2 cut(s) 32, 648
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 1 cut(s) 702
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.