RLG00000014300
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006872
Physical Location & Seq
Reverse (-)
50922021 .. 50927038
5018 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014300

Sequence Viewer

Length: 2994 bp
ATGGAAGAAAAACGCGGAGACGCCGGAACTCAGCCTCCAGCCAATGCCGCCGACTCTCCGGCCACCGAGCCTACTTCTTCCAGACGCCGCGCCGGAGGCCAAAAGCGAAAGGCCGGCAGCCTCGGCGGCTCGGGCTCTTCATCAACACCGTCGAAACGCTTGACTCGAGAGAAGGCTTCGCTTTCTCACCCTCCGATCCACAACGGCCCGTTGACGAGGGCCCGCCAGGGGCCCAATAACCATGCGTCGGCCTCAGCCTCGGCCGTGAAGCCTGCTGCTCAGACGAAGCGGCCGGAGCCGTCGTCGGTGGAGGCGGAGCGGGCTAAAAGGGAGGGCGAGTTGGAGGCTTTGGAGGCTTCTATGGAAGCTGAGTTTGAAGCCATTAGATCTCGCGATGCCAATGCTCATGTGGTTCCCAGTCATTGTGGTTGGTTTTCATGGACAAAGATTCACGCCATTGAGGAGCGTATGTTGCCGTCTTTCTTTAATGGGAAGTCTGATACTCGAACTCCCGATACATACTTGGAGATACGTAATTGTATTATGAAAAAATTCCATGCGAATCCAGGAACATTGGTTGAACTGAAGGATATGTTGGAGCTTGAAGTGGGAGACTTCGATTCAAGACAAGAAGTAATGGAATTTTTGGACCACTGGGGTTTGATAAATTTCCACCCTTTCCCACCAACAGGTTCTACTGTTGCGAATGTCAACAGTGATGAGGTGACAGAAAGGGATTCTTTGGTAGATAAGTTGTATCACTTTGAAGCACTAGAATCACGATCATCAGTGGTTCCTAAGACTAACTTATTTACTCCAACTGTGCCATCTGGTCTGTTCCCAGAGTCTACATTTGCTGAAGAATTGGTGAGGCCTGAGGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCAAACGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCTGATTGCTTTAACAACGGGAAATTCGACTCGGGTATGTCTTCATCAGATTTTATTCTTATGGAGCCTGCTGAGGCTCCTGGGGTAAGTGGTGGGAAGTGGACAGATCAGGAGACCCTCCTTCTCCTTGAAGCATTAGAATTATATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATCGAGGATACCTTCCTAGATCGTGATGATGATATTGATGCCAGTGCCAAAGAAACTGCAGATCCAACTTCAACTAACAATGATTTATTACCCCCCAAAGATGCCCCTGAAACAACAGAGAATAAGACAAGTGCTAATGAGAGTGACCCTCAAACTTCCCCGATGGAAATTTCAAAAGAAGAAGCAAGTGAGGTTAAAGTTGGGGAGGATACTTCAAAGCCAGAAGATGAAAATGAAGTCAAAGTTGGTCAGGACACCTCGAAGTTGGAAGATACTGGTGATTTGAAAATTGATCAGGAAACAGATGAGAACCTTGCATTGAAGGCTCTTAAAGAAGCCTTTGAAGTTGTTGGTTATCCTCAAACACCTGAAAGTCAACTCTCATTTGCAGATGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTGGCACGGTTGGTAGGACCTGATCATGCCATTGCCTCAGCACATAATTCTTTGAAATCCATATCTGCAGATTCTCCTGGCATTGAGCTGGCTTCGAGGCACTGCTTTATTTTGGAAGATCCACCAAATGACAGAAAGGAACAAGCTAGTCATGATAGTGTTGCTGCTGAAAGGGAAGTGCAGAGTGAGAAAGTCGATGAAGAAAATAGTCATAAAGAGGATAACTCCACCTCAGGTTTGGAAGAGAGAGGTGTATCAAATGATAACAACGACAAGAAACTTGAAGAAGTTACTCCTGAAGAAAAGTCACAATCTACAAAAGAACAAGATGACAGGGTTTCTCATGAGGAAGTAGGATCTAATAAATTGAACAAGTCAAACAACTCAGAGTTACCAAATGACCAACCACCAACTTTGGGGCAGTCAGATAATTCAAAAGTTGAGACACCACCAAGTTCAGTAAAGGAGTCGGGAGAGGGAACTTCAGTAGGAAAGCCTTCTGAAACCATAGAGACACCAATGGATGTGGATATGTCTGACTCCAATCCCTCAACGAAGACGGAGCCTCAGCAACCAGTTACATCAAATTCAGCTGAGGAACCTTCTCAGTCTACAGAGGCATCAAAAGAAGTGGATGTATCTAATGCTCTGCCTTCAGGAAGAGATGAGCCTCCACCACCAGTTACTGAAGAACCCCCTTCAGAAACATCAAAGGATGTTCTTATGGTGTGTGACTCTCAGCCCCCACAAGAGAATGAGCCTTCCCAACCAGTTGAAAACACTGCAAGTGAGGATCAGACTGATGATAGTAAACACGAGAAGCATGACTGTACAGACCCAAAAAATGATAAAAACCAAGAGACAAAAGGCGAACAGAAGATTGATAAAATAAAGCAAGCTGCAGTTTCTGCAGTCTCAGCAGCTGCTGTGAAGGCAAAACTTCTAGCAGAACAGGAAGAAGATCAAATTCGACAGCTTGCAGCAATGTTGATAGAGAAGCAGTTGCATAAGTTGGAAGCCAAGTTAGGTTTCTTTCATGAGATGGAAAGTGTTGTGATGAGGGTAAAAGAGCAATTGGATAGGTCAAGACAGAAGCTCTACCATGAGCGGGCACAGATAATTGCTGCCCGGCTTGGCTTACCAGGTTCCTCATCTAGAGGAATGCCATCTGCGATGCCTACCAATAGAATGGCCATGAATGCTGCAAACTCAGTTCCAAGGCCCCCACTTATGATGACCTCTCAAAGGCCACCCATGTCGAGACCCACAGGGGCGGTGGCTTCGACCCCTTTAAACCAATTTTCGTCCTCAGGAAGTGCGATTCGGCCTCCCAGTCAGGACAGCCTTTCTTCTATTGGGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

998

Amino Acids

108.8

Weight (kDa)

4.81

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 146 - 224 1.9e-21 SWIRM domain
ZZ PF00569 298 - 333 1.2e-08 Zinc finger, ZZ type
Myb_DNA-binding PF00249 356 - 398 4.4e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 358 - 398 1.3e-06 Myb-like DNA-binding domain
SWIRM-assoc_1 PF16495 845 - 920 1.3e-23 SWIRM-associated region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 319, 2734
AccI GTMKAC 2 cut(s) 848, 2237
AccII CGCG 3 cut(s) 15, 90, 393
AclWI GGATC 5 cut(s) 190, 1256, 1739, 1990, 2427
AcoI YGGCCR 4 cut(s) 60, 261, 290, 2817
AcsI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2592
AcuI CTGAAG 7 cut(s) 605, 879, 1944, 2094, 2265, 2310, 2334
AcyI GRCGYC 2 cut(s) 21, 85
AfaI GTAC 2 cut(s) 896, 2458
AfiI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2734, 2871
AflIII ACRYGT 1 cut(s) 1147
AjnI CCWGG 6 cut(s) 225, 565, 1051, 1626, 1702, 2767
AjuI GAANNNNNNNTTGG 6 cut(s) 578, 610, 1428, 1460, 2639, 2671
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
Alw26I GTCTC 8 cut(s) 12, 606, 1079, 2063, 2132, 2480, 2545, 2881
AlwI GGATC 5 cut(s) 190, 1256, 1739, 1990, 2427
AlwNI CAGNNNCTG 4 cut(s) 2312, 2534, 2549, 2552
Ama87I CYCGRG 3 cut(s) 130, 165, 1003
ApaI GGGCCC 2 cut(s) 223, 234
ApoI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2592
Asp700I GAANNNNTTC 2 cut(s) 551, 2122
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2847
AsuC2I CCSGG 1 cut(s) 2755
AsuHPI GGTGA 4 cut(s) 179, 736, 880, 1490
AvaI CYCGRG 3 cut(s) 130, 165, 1003
AvaII GGWCC 2 cut(s) 649, 1643
AxyI CCTNAGG 3 cut(s) 876, 1858, 2935
BaeGI GKGCMC 3 cut(s) 223, 234, 2740
BalI TGGCCA 1 cut(s) 2819
BanII GRGCYC 3 cut(s) 137, 223, 234
BauI CACGAG 1 cut(s) 2441
BbsI GAAGAC 2 cut(s) 1005, 2189
BbvCI CCTCAGC 5 cut(s) 253, 1044, 1663, 2193, 2220
BccI CCATC 4 cut(s) 835, 1357, 2662, 2800
BceAI ACGGC 4 cut(s) 220, 248, 283, 460
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 6 cut(s) 227, 567, 1053, 1628, 1704, 2769
BciVI GTATCC 2 cut(s) 1201, 1402
BclI TGATCA 2 cut(s) 1492, 1648
BcnI CCSGG 1 cut(s) 2755
BcoDI GTCTC 8 cut(s) 12, 606, 1079, 2063, 2132, 2480, 2545, 2881
BfaI CTAG 5 cut(s) 773, 1217, 1773, 2570, 2781
BfmI CTRYAG 5 cut(s) 1257, 1692, 2238, 2526, 2535
BfuI GTATCC 2 cut(s) 1201, 1402
BglI GCCNNNNNGGC 2 cut(s) 126, 880
BglII AGATCT 1 cut(s) 386
Bme1390I CCNGG 7 cut(s) 227, 567, 1053, 1628, 1704, 2755, 2769
Bme18I GGWCC 2 cut(s) 649, 1643
BmeT110I CYCGRG 3 cut(s) 130, 165, 1003
BmgT120I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2847
BmrFI CCNGG 7 cut(s) 227, 567, 1053, 1628, 1704, 2755, 2769
BmrI ACTGGG 3 cut(s) 411, 664, 2952
BmsI GCATC 5 cut(s) 385, 1228, 1291, 2255, 2790
BmuI ACTGGG 3 cut(s) 411, 664, 2952
BpiI GAAGAC 2 cut(s) 1005, 2189
BplI GAGNNNNNCTC 4 cut(s) 1333, 1365, 1835, 1867
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 5 cut(s) 253, 1044, 1663, 2193, 2220
BpuMI CCSGG 1 cut(s) 2755
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 2 cut(s) 21, 85
BsaI GGTCTC 2 cut(s) 1079, 2881
BsaJI CCNNGG 6 cut(s) 121, 226, 258, 1052, 1608, 2843
Bsc4I CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2734, 2871
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2396, 2958
Bse21I CCTNAGG 3 cut(s) 876, 1858, 2935
Bse3DI GCAATG 4 cut(s) 898, 940, 1656, 2616
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 6 cut(s) 227, 567, 1053, 1628, 1704, 2769
BseDI CCNNGG 6 cut(s) 121, 226, 258, 1052, 1608, 2843
BseGI GGATG 3 cut(s) 2155, 2266, 2347
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2734, 2871
BseMI GCAATG 4 cut(s) 898, 940, 1656, 2616
BseNI ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2396, 2958
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 3 cut(s) 223, 234, 2740
BseX3I CGGCCG 2 cut(s) 261, 290
BsgI GTGCAG 1 cut(s) 1826
Bsh1236I CGCG 3 cut(s) 15, 90, 393
Bsh1285I CGRYCG 2 cut(s) 264, 293
BsiEI CGRYCG 2 cut(s) 264, 293
BsiHKCI CYCGRG 3 cut(s) 130, 165, 1003
BsiSI CCGG 6 cut(s) 24, 59, 93, 114, 293, 2755
BslI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2734, 2871
BsmAI GTCTC 8 cut(s) 12, 606, 1079, 2063, 2132, 2480, 2545, 2881
BsmBI CGTCTC 1 cut(s) 12
BsmI GAATGC 3 cut(s) 1622, 2793, 2830
Bso31I GGTCTC 2 cut(s) 1079, 2881
BsoBI CYCGRG 3 cut(s) 130, 165, 1003
Bsp120I GGGCCC 2 cut(s) 219, 230
Bsp1286I GDGCHC 4 cut(s) 137, 223, 234, 2740
Bsp1407I TGTACA 1 cut(s) 2456
Bsp19I CCATGG 1 cut(s) 1608
Bsp68I TCGCGA 1 cut(s) 393
BspFNI CGCG 3 cut(s) 15, 90, 393
BspHI TCATGA 3 cut(s) 1777, 1969, 2662
BspMAI CTGCAG 4 cut(s) 1261, 1696, 2530, 2539
BspPI GGATC 5 cut(s) 190, 1256, 1739, 1990, 2427
BspQI GCTCTTC 1 cut(s) 142
BspTNI GGTCTC 2 cut(s) 1079, 2881
BsrBI CCGCTC 2 cut(s) 319, 2734
BsrDI GCAATG 4 cut(s) 898, 940, 1656, 2616
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 2456
BsrI ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2396, 2958
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 6 cut(s) 121, 226, 258, 1052, 1608, 2843
BssNI GRCGYC 2 cut(s) 21, 85
BssSI CACGAG 1 cut(s) 2441
BssT1I CCWWGG 2 cut(s) 1608, 2843
Bst2BI CACGAG 1 cut(s) 2441
Bst2UI CCWGG 6 cut(s) 227, 567, 1053, 1628, 1704, 2769
Bst4CI ACNGT 6 cut(s) 150, 700, 716, 823, 1635, 2456
Bst6I CTCTTC 3 cut(s) 142, 1863, 2281
BstACI GRCGYC 2 cut(s) 21, 85
BstAPI GCANNNNNTGC 1 cut(s) 2534
BstAUI TGTACA 1 cut(s) 2456
BstBAI YACGTR 1 cut(s) 533
BstDSI CCRYGG 1 cut(s) 1608
BstENI CCTNNNNNAGG 1 cut(s) 2869
BstF5I GGATG 3 cut(s) 2155, 2266, 2347
BstFNI CGCG 3 cut(s) 15, 90, 393
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 8 cut(s) 12, 606, 1079, 2063, 2132, 2480, 2545, 2881
BstMCI CGRYCG 2 cut(s) 264, 293
BstNI CCWGG 6 cut(s) 227, 567, 1053, 1628, 1704, 2769
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 7 cut(s) 225, 565, 1051, 1626, 1702, 2753, 2767
BstSFI CTRYAG 5 cut(s) 1257, 1692, 2238, 2526, 2535
BstSLI GKGCMC 3 cut(s) 223, 234, 2740
BstSNI TACGTA 1 cut(s) 533
BstUI CGCG 3 cut(s) 15, 90, 393
BstV2I GAAGAC 2 cut(s) 1005, 2189
BstX2I RGATCY 4 cut(s) 386, 1261, 1744, 1982
BstXI CCANNNNNNTGG 2 cut(s) 1615, 2815
BstYI RGATCY 4 cut(s) 386, 1261, 1744, 1982
BstZI CGGCCG 2 cut(s) 261, 290
Bsu36I CCTNAGG 3 cut(s) 876, 1858, 2935
BsuI GTATCC 2 cut(s) 1201, 1402
BtgI CCRYGG 1 cut(s) 1608
BtgZI GCGATG 2 cut(s) 408, 2813
BtsCI GGATG 3 cut(s) 2155, 2266, 2347
BtsI GCAGTG 2 cut(s) 1726, 2406
BtsIMutI CAGTG 7 cut(s) 652, 721, 795, 1178, 1249, 1726, 2406
BtuMI TCGCGA 1 cut(s) 393
CaiI CAGNNNCTG 4 cut(s) 2312, 2534, 2549, 2552
CciI TCATGA 3 cut(s) 1777, 1969, 2662
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2847
CseI GACGC 3 cut(s) 29, 93, 234
CsiI ACCWGGT 1 cut(s) 2767
Csp6I GTAC 2 cut(s) 895, 2457
CspCI CAANNNNNGTGG 6 cut(s) 2022, 2057, 2133, 2168, 2238, 2273
CviQI GTAC 2 cut(s) 895, 2457
DraI TTTAAA 1 cut(s) 2919
EaeI YGGCCR 4 cut(s) 60, 261, 290, 2817
EagI CGGCCG 2 cut(s) 261, 290
Eam1104I CTCTTC 3 cut(s) 142, 1863, 2281
EarI CTCTTC 3 cut(s) 142, 1863, 2281
EciI GGCGGA 1 cut(s) 329
EclXI CGGCCG 2 cut(s) 261, 290
Eco105I TACGTA 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 1608, 2843
Eco147I AGGCCT 1 cut(s) 874
Eco24I GRGCYC 3 cut(s) 137, 223, 234
Eco31I GGTCTC 2 cut(s) 1079, 2881
Eco47I GGWCC 2 cut(s) 649, 1643
Eco52I CGGCCG 2 cut(s) 261, 290
Eco57I CTGAAG 7 cut(s) 605, 879, 1944, 2094, 2265, 2310, 2334
Eco81I CCTNAGG 3 cut(s) 876, 1858, 2935
Eco88I CYCGRG 3 cut(s) 130, 165, 1003
EcoNI CCTNNNNNAGG 1 cut(s) 2869
EcoO109I RGGNCCY 4 cut(s) 219, 230, 1643, 2847
EcoRII CCWGG 6 cut(s) 225, 565, 1051, 1626, 1702, 2767
EcoT14I CCWWGG 2 cut(s) 1608, 2843
EcoT38I GRGCYC 3 cut(s) 137, 223, 234
ErhI CCWWGG 2 cut(s) 1608, 2843
Esp3I CGTCTC 1 cut(s) 12
FalI AAGNNNNNCTT 4 cut(s) 724, 756, 791, 823
FauI CCCGC 3 cut(s) 230, 312, 2727
FbaI TGATCA 2 cut(s) 1492, 1648
FblI GTMKAC 2 cut(s) 848, 2237
FokI GGATG 3 cut(s) 2162, 2273, 2354
FriOI GRGCYC 3 cut(s) 137, 223, 234
FspBI CTAG 5 cut(s) 773, 1217, 1773, 2570, 2781
GlaI GCGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 21
HapII CCGG 6 cut(s) 24, 59, 93, 114, 293, 2755
HgaI GACGC 3 cut(s) 29, 93, 234
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 2 cut(s) 21, 85
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 3 cut(s) 213, 712, 1577
HindII GTYRAC 3 cut(s) 213, 712, 1577
HpaII CCGG 6 cut(s) 24, 59, 93, 114, 293, 2755
HphI GGTGA 4 cut(s) 179, 736, 880, 1490
Hpy166II GTNNAC 7 cut(s) 213, 712, 849, 1074, 1577, 2238, 2438
Hpy8I GTNNAC 7 cut(s) 213, 712, 849, 1074, 1577, 2238, 2438
Hpy99I CGWCG 4 cut(s) 154, 250, 304, 307
HpyCH4III ACNGT 6 cut(s) 150, 700, 716, 823, 1635, 2456
HpyCH4IV ACGT 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 532
Hsp92I GRCGYC 2 cut(s) 21, 85
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 2 cut(s) 1492, 1648
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 7 cut(s) 295, 316, 463, 598, 1036, 1054, 2188
LweI GCATC 5 cut(s) 385, 1228, 1291, 2255, 2790
MabI ACCWGGT 1 cut(s) 2767
MaeI CTAG 5 cut(s) 773, 1217, 1773, 2570, 2781
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 8 cut(s) 724, 1343, 1915, 1932, 2016, 2203, 2308, 2357
MbiI CCGCTC 2 cut(s) 319, 2734
MfeI CAATTG 1 cut(s) 2699
MflI RGATCY 4 cut(s) 386, 1261, 1744, 1982
MhlI GDGCHC 4 cut(s) 137, 223, 234, 2740
MlsI TGGCCA 1 cut(s) 2819
MluNI TGGCCA 1 cut(s) 2819
MlyI GAGTC 7 cut(s) 47, 157, 854, 995, 2102, 2159, 2354
MmeI TCCRAC 6 cut(s) 321, 576, 842, 1289, 1446, 2619
Mox20I TGGCCA 1 cut(s) 2819
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 551, 2122
MscI TGGCCA 1 cut(s) 2819
MseI TTAA 5 cut(s) 486, 984, 1395, 1530, 2918
MslI CAYNNNNRTG 1 cut(s) 1782
Msp20I TGGCCA 1 cut(s) 2819
MspA1I CMGCKG 4 cut(s) 887, 917, 2219, 2549
MspI CCGG 6 cut(s) 24, 59, 93, 114, 293, 2755
MspR9I CCNGG 7 cut(s) 227, 567, 1053, 1628, 1704, 2755, 2769
MunI CAATTG 1 cut(s) 2699
Mva1269I GAATGC 3 cut(s) 1622, 2793, 2830
MvaI CCWGG 6 cut(s) 227, 567, 1053, 1628, 1704, 2769
MvnI CGCG 3 cut(s) 15, 90, 393
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 2755
NcoI CCATGG 1 cut(s) 1608
NgoMIV GCCGGC 1 cut(s) 113
NmeAIII GCCGAG 2 cut(s) 102, 239
NmuCI GTSAC 4 cut(s) 724, 1343, 1932, 2357
NruI TCGCGA 1 cut(s) 393
NspI RCATGY 1 cut(s) 1151
PaeR7I CTCGAG 1 cut(s) 165
PagI TCATGA 3 cut(s) 1777, 1969, 2662
PceI AGGCCT 1 cut(s) 874
PciI ACATGT 1 cut(s) 1147
PciSI GCTCTTC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 2 cut(s) 163, 996
PctI GAATGC 3 cut(s) 1622, 2793, 2830
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 551, 2122
PfeI GAWTC 7 cut(s) 448, 562, 620, 737, 776, 1697, 2947
PfoI TCCNGGA 1 cut(s) 565
PleI GAGTC 7 cut(s) 47, 157, 853, 995, 2101, 2159, 2354
PpsI GAGTC 7 cut(s) 47, 157, 853, 995, 2101, 2159, 2354
Ppu21I YACGTR 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 1643
PscI ACATGT 1 cut(s) 1147
Psp5II RGGWCCY 1 cut(s) 1643
Psp6I CCWGG 6 cut(s) 225, 565, 1051, 1626, 1702, 2767
PspGI CCWGG 6 cut(s) 225, 565, 1051, 1626, 1702, 2767
PspOMI GGGCCC 2 cut(s) 219, 230
PspPI GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2847
PspPPI RGGWCCY 1 cut(s) 1643
PsrI GAACNNNNNNTAC 2 cut(s) 499, 531
PstI CTGCAG 4 cut(s) 1261, 1696, 2530, 2539
PstNI CAGNNNCTG 4 cut(s) 2312, 2534, 2549, 2552
PsuI RGATCY 4 cut(s) 386, 1261, 1744, 1982
PvuII CAGCTG 4 cut(s) 887, 917, 2219, 2549
RruI TCGCGA 1 cut(s) 393
RsaI GTAC 2 cut(s) 896, 2458
RsaNI GTAC 2 cut(s) 895, 2457
RseI CAYNNNNRTG 1 cut(s) 1782
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 5 cut(s) 486, 984, 1395, 1530, 2918
Sau96I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2847
SchI GAGTC 7 cut(s) 47, 157, 854, 995, 2102, 2159, 2354
ScrFI CCNGG 7 cut(s) 227, 567, 1053, 1628, 1704, 2755, 2769
SduI GDGCHC 4 cut(s) 137, 223, 234, 2740
SexAI ACCWGGT 1 cut(s) 2767
SfaNI GCATC 5 cut(s) 385, 1228, 1291, 2255, 2790
SfcI CTRYAG 5 cut(s) 1257, 1692, 2238, 2526, 2535
SfiI GGCCNNNNNGGCC 1 cut(s) 880
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 2 cut(s) 649, 1643
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 1782
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SnaBI TACGTA 1 cut(s) 533
SseBI AGGCCT 1 cut(s) 874
SspMI CTAG 5 cut(s) 773, 1217, 1773, 2570, 2781
StuI AGGCCT 1 cut(s) 874
StyD4I CCNGG 7 cut(s) 225, 565, 1051, 1626, 1702, 2753, 2767
StyI CCWWGG 2 cut(s) 1608, 2843
TaaI ACNGT 6 cut(s) 150, 700, 716, 823, 1635, 2456
TaiI ACGT 1 cut(s) 535
TatI WGTACW 1 cut(s) 2456
TauI GCSGC 4 cut(s) 50, 90, 129, 292
TfiI GAWTC 7 cut(s) 448, 562, 620, 737, 776, 1697, 2947
Tru1I TTAA 5 cut(s) 486, 984, 1395, 1530, 2918
Tru9I TTAA 5 cut(s) 486, 984, 1395, 1530, 2918
TscAI CASTG 7 cut(s) 659, 721, 795, 1178, 1249, 1733, 2413
TseFI GTSAC 4 cut(s) 724, 1343, 1932, 2357
Tsp45I GTSAC 4 cut(s) 724, 1343, 1932, 2357
TspDTI ATGAA 9 cut(s) 129, 426, 560, 1005, 1443, 1449, 1839, 2651, 2837
TspGWI ACGGA 1 cut(s) 2201
TspRI CASTG 7 cut(s) 659, 721, 795, 1178, 1249, 1733, 2413
VpaK11BI GGWCC 2 cut(s) 649, 1643
XagI CCTNNNNNAGG 1 cut(s) 2869
XapI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2592
XbaI TCTAGA 1 cut(s) 2780
XceI RCATGY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 3 cut(s) 406, 1861, 2899
XhoI CTCGAG 1 cut(s) 165
XmiI GTMKAC 2 cut(s) 848, 2237
XmnI GAANNNNTTC 2 cut(s) 551, 2122
XspI CTAG 5 cut(s) 773, 1217, 1773, 2570, 2781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.