Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0006872

Physical Location & Seq

Genomic Coordinates Forward (+)

958122 .. 963103

Gene Structure 4982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGAAGAAAAACGCGGAGACGCCGGAACTCAGCCTCCGGCTAATGCCGACTCCCCGGCCACCGAGCCTACTTCTTCGAGACGCCGCGCCGGAGGCCAAAAGCGAAAGGCCAGCAGCCTCGGCGGCTCGGGCTCTTCATCAACACCGTCGAAACGCTTGACTCGCGAGAAGGCTTCGCTTTCTCACCCTCCGATCCACAACGGCCCTTTGACGAGGGCCCGCCAGGGGCCCAATAACCATGCGTCGGCCTCAGCCGCGGCCGTGAAGCCTGCTGCTCAGACGAAGCGGCCGGAGCCGTCGTCGGTGGAGGCGGAGCGGGCTAAAAGGGAGAGCGAGTTGGAGGCTTTGGAGGCTTCTATGGAAGCTGAGTTTGAAGCCATTAGATCTCGCGATGCCAATGCTCATGTGGTTCCCAGTCATTGTGGTTGGTTTTCATGGACAAAGATTCACGCCATTGAGGAGCGTATGTTGCCATCTTTCTTTAATGGGAAGTCTGATACTCGAACTCCCGATAGATACCTGGAGATACGCAATTGTATTATGAAAAAATTCCATGCGAATCCGAGAACATTGGTTGAACTGAAGGATATGTTGGAGCTTGAAGTGGGAGACTTCGATTCAAGACAAGAAATAAGTTGTATCACTTTTGAAGCACTAGAATCACGATCGTCAGTGGTTCCTAAGACTAACTTATTTACTCCAACTGTGCCATCTGGTCTGTTCCCAGAGTCTACATTTGCTGAAGAATTGGTGAGGCCTGAGGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCGCAAACGCTACCATTGCCAGAAGCAGGTCGGCAGATTTTGATCTGTGTTCTGATTGCTTTAACAACGGGAAATTCGATTCGGGTATGTCTTCATCAGATTTTATTCTTATGGAGCCTGCTGAGGCTCCCGGGTGTATATTGCACTTTGTTCAAATGCCAATCGAGGATACCTTCCTAGATCATGATGATGATATTGATTCCAGTGCCAAAGAAACTGCAGATCCAACTTCAACTAACAATGATTTATTGCCCCCCAAAGATGCCCCTGAAACAACAGAGAATAAGACAAGTGCTAATGAGAGTGACCCTCAAACTTCCCCGATGGAAATTTCAAAAGAAGAAGCAAGTGAGGTTAATGTTGGGGAGGATACTTCAAAGCCAGAAGATGAAAATGAAGTCAAAGTTGGTCAGGACACCTCAAAGTTGGAAGATACTAGTGATTTGAAAATTGATCAGGAAACAGATGAGAACCTTGCATTGAAGGCTCTTAAAGAAGCCTTTGAAGTTGTTGGTTATCCTCAAACACCTGAAAGTCAACTCTCATTTGCAGATGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTGGCACGGTTGGTGGGACCTGATCATGCCATTGCCTCAGCACATAATTCTTTGAAATCCATATCTGCAGATTCTCCTGGCATTGAGCTGGCTTCGAGGCACTGCTTTATTTTGGAAGATCCACCAAATGACAGAAAGGAACAAGCTAGTCATGATAGTGTTGCTGCTGAAAGGGAAGTGCAGGGTGAGAAAATCGATGAAGAAAATAGTCATAAAGAGGATAACTCCACCTCAGGTTTGGAAGATAGAGGTGTATCAAATGATAACAGCGACAAGAAACTTGAAGAAGTTACTCCTGAAGAAAAGTCACAATCTACAAAAGAACAAGTTGACAGGGTTTCTCATGAGGAAGTAGGAACTGATAAATTGAACAAGTCAAACAACTCAGAGTTAGCAAATGACCAACCACCAACTTTGGGGGAGTCAGATAATTCAAAAGTTGACACACCACCAAGTTCAGTAAAGGAGTCTGGAGAGGGAACTTCAGTAGGACAGCCTTCTGAAACCATAGAGACACCAATGGATGTGGATATGTCTGACTCCAATCCCTCAAGGAAGACGGAGCCTCAGCAACCAGTTACATCAAATTCAGCTGAGGAACCTTCTCAGTCTACAGAGGCATCAAAAGAAGTGGATGTATCTAATGCTCTGCCTTCAGAAAGAGATGAGCCTCCACCACCAGTTACTGAAGAACCCCTCAACCTACAGAAACATCAAAGGATGTTCTTATGGTGTGAGGATCAGACTGATGATAGTAAACACGAGAAGCATGACTGTACAGACCCAAAAAATGATAAAAAGCAAGAGACAAAAGGCGAACAGAAGATTGATAAAATAAAGCAAGCTGCAGTTTCTGCAGTGTCAGCAGCTGCTGTGAAGGCAAAACTTCTAGCAGAACAGGAAGAAGATCAAATTCGACAGCTTGCAGCAATGTTGATAGAGAAGCAGTTGCATAAGTTGGAAGCCAAGTTAGGTTTCTTTCATGAGATGGAAAGTGTTGTGATGAGGGTTCCCTCATCTAGAGGAATGCTATCTGCGATGCCTACCAATAGAATGGCCACGAATGCTGCAAACTCAGTTCCAAGGCCCCCACTTATGATGACCTCTCAAAGGCCACCCATGTCGAGACCCACAGGGGCGGTGGCTTTGACCCCTTTAAACCAATTTTCGTCCTCAGGAAGTGCGATTCGGCCTCCCAGTCAGGACAGCCTTTCTTCTATTGGGACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

876

Amino Acids

95.38

Weight (kDa)

4.82

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	145 - 211	4.2e-13	SWIRM domain
SWIRM-assoc_1	PF16495	751 - 802	2.5e-15	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34430 AT4G34430 AT4G34430 AT4G34430
fragaria_vesca	FvH4_2g08620 FvH4_2g08620
malus_domestica	MD05G1067900.v1.1 MD10G1077800.v1.1
prunus_persica	Prupe.8G098500_v2.0.a1
pyrus_communis	pycom05g05880 pycom10g06070
rosa_chinensis	RchiOBHm_Chr6g0263951
rosa_laevigata	RLG00000014300
rosa_multiflora	Rmu_co8374983.1_g000001 Rmu_sc0002112.1_g000023 Rmu_sc0034069.1_g000004
rosa_roxburghii	Rroxscaffold_176G00431340 Rroxscaffold_7G00203710
rosa_rugosa	Rorug06G0007000 Rorug06G0007000 Rorug06G0007000
rosa_samantha	Rh6AG127900 Rh6BG123700 Rh6CG122400 Rh6DG109600
rosa_wichuraiana	Rw6G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	828
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	731, 2009
AccII	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
AclWI	GGATC	4 cut(s)	187, 1028, 1511, 2145
AcoI	YGGCCR	4 cut(s)	57, 258, 287, 2454
AcsI	RAATTY	5 cut(s)	548, 884, 1140, 1984, 2310
AcuI	CTGAAG	6 cut(s)	602, 762, 1716, 1866, 2037, 2106
AcyI	GRCGYC	2 cut(s)	21, 82
AfaI	GTAC	2 cut(s)	779, 2176
AfiI	CCNNNNNNNGG	6 cut(s)	225, 244, 837, 1381, 1814, 2508
AhlI	ACTAGT	1 cut(s)	1247
AjnI	CCWGG	4 cut(s)	222, 519, 1398, 1474
AjuI	GAANNNNNNNTTGG	6 cut(s)	575, 607, 1200, 1232, 2357, 2389
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
Alw26I	GTCTC	6 cut(s)	12, 73, 603, 1904, 2198, 2518
AlwI	GGATC	4 cut(s)	187, 1028, 1511, 2145
AlwNI	CAGNNNCTG	4 cut(s)	2084, 2252, 2267, 2270
Ama87I	CYCGRG	2 cut(s)	127, 941
ApaI	GGGCCC	2 cut(s)	220, 231
ApeKI	GCWGC	9 cut(s)	114, 272, 1391, 1562, 2243, 2264, 2267, 2324, 2465
ApoI	RAATTY	5 cut(s)	548, 884, 1140, 1984, 2310
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	89, 815
AspS9I	GGNCC	8 cut(s)	203, 216, 217, 227, 228, 764, 1415, 2484
AsuC2I	CCSGG	3 cut(s)	56, 942, 943
AsuHPI	GGTGA	3 cut(s)	176, 763, 1595
AvaI	CYCGRG	2 cut(s)	127, 941
AvaII	GGWCC	1 cut(s)	1415
AxyI	CCTNAGG	3 cut(s)	759, 1630, 2572
BaeGI	GKGCMC	2 cut(s)	220, 231
BalI	TGGCCA	1 cut(s)	2456
BanII	GRGCYC	3 cut(s)	134, 220, 231
BauI	CACGAG	1 cut(s)	2159
BbsI	GAAGAC	2 cut(s)	894, 1961
BbvCI	CCTCAGC	5 cut(s)	250, 933, 1435, 1965, 1992
BbvI	GCAGC	9 cut(s)	126, 259, 1403, 1549, 2230, 2254, 2276, 2336, 2452
BccI	CCATC	4 cut(s)	481, 718, 1129, 2380
BceAI	ACGGC	3 cut(s)	217, 245, 280
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	4 cut(s)	224, 521, 1400, 1476
BciVI	GTATCC	2 cut(s)	973, 1174
BclI	TGATCA	2 cut(s)	1264, 1420
BcnI	CCSGG	3 cut(s)	56, 942, 943
BcoDI	GTCTC	6 cut(s)	12, 73, 603, 1904, 2198, 2518
BcuI	ACTAGT	1 cut(s)	1247
BfaI	CTAG	6 cut(s)	656, 989, 1248, 1545, 2288, 2418
BfmI	CTRYAG	6 cut(s)	1029, 1464, 2010, 2102, 2244, 2253
BfuAI	ACCTGC	1 cut(s)	828
BfuI	GTATCC	2 cut(s)	973, 1174
BglI	GCCNNNNNGGC	2 cut(s)	123, 763
BglII	AGATCT	1 cut(s)	383
Bme1390I	CCNGG	7 cut(s)	56, 224, 521, 942, 943, 1400, 1476
Bme18I	GGWCC	1 cut(s)	1415
BmeT110I	CYCGRG	2 cut(s)	127, 941
BmgT120I	GGNCC	8 cut(s)	203, 216, 217, 227, 228, 764, 1415, 2484
BmrFI	CCNGG	7 cut(s)	56, 224, 521, 942, 943, 1400, 1476
BmrI	ACTGGG	2 cut(s)	408, 2589
BmsI	GCATC	4 cut(s)	382, 1063, 2027, 2427
BmuI	ACTGGG	2 cut(s)	408, 2589
BpiI	GAAGAC	2 cut(s)	894, 1961
BplI	GAGNNNNNCTC	4 cut(s)	1105, 1137, 1607, 1639
BpmI	CTGGAG	2 cut(s)	542, 1890
Bpu10I	CCTNAGC	5 cut(s)	250, 933, 1435, 1965, 1992
BpuEI	CTTGAG	1 cut(s)	1933
BpuMI	CCSGG	3 cut(s)	56, 942, 943
Bsa29I	ATCGAT	1 cut(s)	1593
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	2 cut(s)	21, 82
BsaI	GGTCTC	1 cut(s)	2518
BsaJI	CCNNGG	7 cut(s)	54, 118, 223, 255, 941, 1380, 2480
Bsc4I	CCNNNNNNNGG	6 cut(s)	225, 244, 837, 1381, 1814, 2508
Bse1I	ACTGG	5 cut(s)	414, 1014, 1973, 2078, 2595
Bse21I	CCTNAGG	3 cut(s)	759, 1630, 2572
Bse3DI	GCAATG	4 cut(s)	781, 825, 1428, 2334
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	4 cut(s)	224, 521, 1400, 1476
BseCI	ATCGAT	1 cut(s)	1593
BseDI	CCNNGG	7 cut(s)	54, 118, 223, 255, 941, 1380, 2480
BseGI	GGATG	3 cut(s)	1927, 2038, 2124
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	6 cut(s)	225, 244, 837, 1381, 1814, 2508
BseMI	GCAATG	4 cut(s)	781, 825, 1428, 2334
BseNI	ACTGG	5 cut(s)	414, 1014, 1973, 2078, 2595
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	2 cut(s)	220, 231
BseX3I	CGGCCG	2 cut(s)	258, 287
BseXI	GCAGC	9 cut(s)	126, 259, 1403, 1549, 2230, 2254, 2276, 2336, 2452
BsgI	GTGCAG	1 cut(s)	1598
Bsh1236I	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
Bsh1285I	CGRYCG	3 cut(s)	261, 290, 668
BshVI	ATCGAT	1 cut(s)	1593
BsiEI	CGRYCG	3 cut(s)	261, 290, 668
BsiHKCI	CYCGRG	2 cut(s)	127, 941
BsiSI	CCGG	6 cut(s)	24, 38, 56, 90, 290, 942
BslFI	GGGAC	1 cut(s)	1428
BslI	CCNNNNNNNGG	6 cut(s)	225, 244, 837, 1381, 1814, 2508
BsmAI	GTCTC	6 cut(s)	12, 73, 603, 1904, 2198, 2518
BsmBI	CGTCTC	2 cut(s)	12, 73
BsmFI	GGGAC	1 cut(s)	1428
BsmI	GAATGC	3 cut(s)	1394, 2430, 2467
Bso31I	GGTCTC	1 cut(s)	2518
BsoBI	CYCGRG	2 cut(s)	127, 941
Bsp120I	GGGCCC	2 cut(s)	216, 227
Bsp1286I	GDGCHC	3 cut(s)	134, 220, 231
Bsp1407I	TGTACA	1 cut(s)	2174
Bsp19I	CCATGG	1 cut(s)	1380
Bsp68I	TCGCGA	2 cut(s)	165, 390
BspDI	ATCGAT	1 cut(s)	1593
BspFNI	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
BspHI	TCATGA	4 cut(s)	994, 1549, 1741, 2380
BspMAI	CTGCAG	4 cut(s)	1033, 1468, 2248, 2257
BspMI	ACCTGC	1 cut(s)	828
BspPI	GGATC	4 cut(s)	187, 1028, 1511, 2145
BspQI	GCTCTTC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	2518
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	4 cut(s)	781, 825, 1428, 2334
BsrGI	TGTACA	1 cut(s)	2174
BsrI	ACTGG	5 cut(s)	414, 1014, 1973, 2078, 2595
BssECI	CCNNGG	7 cut(s)	54, 118, 223, 255, 941, 1380, 2480
BssNI	GRCGYC	2 cut(s)	21, 82
BssSI	CACGAG	1 cut(s)	2159
BssT1I	CCWWGG	2 cut(s)	1380, 2480
Bst2BI	CACGAG	1 cut(s)	2159
Bst2UI	CCWGG	4 cut(s)	224, 521, 1400, 1476
Bst4CI	ACNGT	4 cut(s)	147, 706, 1407, 2174
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	21, 82
BstAPI	GCANNNNNTGC	1 cut(s)	2252
BstAUI	TGTACA	1 cut(s)	2174
BstC8I	GCNNGC	9 cut(s)	112, 220, 270, 318, 768, 930, 1488, 2241, 2322
BstDSI	CCRYGG	2 cut(s)	255, 1380
BstENI	CCTNNNNNAGG	1 cut(s)	2506
BstF5I	GGATG	3 cut(s)	1927, 2038, 2124
BstFNI	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
BstHHI	GCGC	2 cut(s)	89, 815
BstMAI	GTCTC	6 cut(s)	12, 73, 603, 1904, 2198, 2518
BstMCI	CGRYCG	3 cut(s)	261, 290, 668
BstNI	CCWGG	4 cut(s)	224, 521, 1400, 1476
BstSCI	CCNGG	7 cut(s)	54, 222, 519, 940, 941, 1398, 1474
BstSFI	CTRYAG	6 cut(s)	1029, 1464, 2010, 2102, 2244, 2253
BstSLI	GKGCMC	2 cut(s)	220, 231
BstUI	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
BstV1I	GCAGC	9 cut(s)	126, 259, 1403, 1549, 2230, 2254, 2276, 2336, 2452
BstV2I	GAAGAC	2 cut(s)	894, 1961
BstX2I	RGATCY	3 cut(s)	383, 1033, 1516
BstXI	CCANNNNNNTGG	2 cut(s)	1387, 2452
BstYI	RGATCY	3 cut(s)	383, 1033, 1516
BstZI	CGGCCG	2 cut(s)	258, 287
Bsu15I	ATCGAT	1 cut(s)	1593
Bsu36I	CCTNAGG	3 cut(s)	759, 1630, 2572
BsuI	GTATCC	2 cut(s)	973, 1174
BsuTUI	ATCGAT	1 cut(s)	1593
BtgI	CCRYGG	2 cut(s)	255, 1380
BtgZI	GCGATG	2 cut(s)	405, 2450
BtsCI	GGATG	3 cut(s)	1927, 2038, 2124
BtsI	GCAGTG	2 cut(s)	1498, 2262
BtsIMutI	CAGTG	4 cut(s)	678, 1021, 1498, 2262
BtuMI	TCGCGA	2 cut(s)	165, 390
BveI	ACCTGC	1 cut(s)	828
Cac8I	GCNNGC	9 cut(s)	112, 220, 270, 318, 768, 930, 1488, 2241, 2322
CaiI	CAGNNNCTG	4 cut(s)	2084, 2252, 2267, 2270
CciI	TCATGA	4 cut(s)	994, 1549, 1741, 2380
CfoI	GCGC	2 cut(s)	89, 815
Cfr13I	GGNCC	8 cut(s)	203, 216, 217, 227, 228, 764, 1415, 2484
Cfr42I	CCGCGG	1 cut(s)	258
Cfr9I	CCCGGG	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	1593
CseI	GACGC	3 cut(s)	29, 90, 231
Csp6I	GTAC	2 cut(s)	778, 2175
CspCI	CAANNNNNGTGG	6 cut(s)	1794, 1829, 1905, 1940, 2010, 2045
CviQI	GTAC	2 cut(s)	778, 2175
DraI	TTTAAA	1 cut(s)	2556
EaeI	YGGCCR	4 cut(s)	57, 258, 287, 2454
EagI	CGGCCG	2 cut(s)	258, 287
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	326
EclXI	CGGCCG	2 cut(s)	258, 287
Eco130I	CCWWGG	2 cut(s)	1380, 2480
Eco147I	AGGCCT	1 cut(s)	757
Eco24I	GRGCYC	3 cut(s)	134, 220, 231
Eco31I	GGTCTC	1 cut(s)	2518
Eco47I	GGWCC	1 cut(s)	1415
Eco52I	CGGCCG	2 cut(s)	258, 287
Eco57I	CTGAAG	6 cut(s)	602, 762, 1716, 1866, 2037, 2106
Eco81I	CCTNAGG	3 cut(s)	759, 1630, 2572
Eco88I	CYCGRG	2 cut(s)	127, 941
EcoNI	CCTNNNNNAGG	1 cut(s)	2506
EcoO109I	RGGNCCY	4 cut(s)	216, 227, 1415, 2484
EcoRII	CCWGG	4 cut(s)	222, 519, 1398, 1474
EcoT14I	CCWWGG	2 cut(s)	1380, 2480
EcoT38I	GRGCYC	3 cut(s)	134, 220, 231
ErhI	CCWWGG	2 cut(s)	1380, 2480
Esp3I	CGTCTC	2 cut(s)	12, 73
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	1428
FauI	CCCGC	2 cut(s)	227, 309
FbaI	TGATCA	2 cut(s)	1264, 1420
FblI	GTMKAC	2 cut(s)	731, 2009
FokI	GGATG	3 cut(s)	1934, 2045, 2131
FriOI	GRGCYC	3 cut(s)	134, 220, 231
FspBI	CTAG	6 cut(s)	656, 989, 1248, 1545, 2288, 2418
GlaI	GCGC	2 cut(s)	88, 814
GsuI	CTGGAG	2 cut(s)	542, 1890
HapII	CCGG	6 cut(s)	24, 38, 56, 90, 290, 942
HgaI	GACGC	3 cut(s)	29, 90, 231
HhaI	GCGC	2 cut(s)	89, 815
Hin1I	GRCGYC	2 cut(s)	21, 82
Hin6I	GCGC	2 cut(s)	87, 813
HinP1I	GCGC	2 cut(s)	87, 813
HincII	GTYRAC	3 cut(s)	1349, 1729, 1840
HindII	GTYRAC	3 cut(s)	1349, 1729, 1840
HpaII	CCGG	6 cut(s)	24, 38, 56, 90, 290, 942
HphI	GGTGA	3 cut(s)	176, 763, 1595
Hpy166II	GTNNAC	6 cut(s)	732, 1349, 1729, 1840, 2010, 2156
Hpy8I	GTNNAC	6 cut(s)	732, 1349, 1729, 1840, 2010, 2156
Hpy99I	CGWCG	4 cut(s)	151, 247, 301, 304
HpyAV	CCTTC	8 cut(s)	163, 577, 994, 1288, 1905, 2010, 2061, 2269
HpyCH4III	ACNGT	4 cut(s)	147, 706, 1407, 2174
Hsp92I	GRCGYC	2 cut(s)	21, 82
HspAI	GCGC	2 cut(s)	87, 813
Ksp22I	TGATCA	2 cut(s)	1264, 1420
KspI	CCGCGG	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	7 cut(s)	292, 313, 460, 595, 925, 943, 1960
Lsp1109I	GCAGC	9 cut(s)	126, 259, 1403, 1549, 2230, 2254, 2276, 2336, 2452
LweI	GCATC	4 cut(s)	382, 1063, 2027, 2427
MaeI	CTAG	6 cut(s)	656, 989, 1248, 1545, 2288, 2418
MaeIII	GTNAC	5 cut(s)	1115, 1687, 1704, 1975, 2080
MbiI	CCGCTC	1 cut(s)	316
MfeI	CAATTG	1 cut(s)	532
MflI	RGATCY	3 cut(s)	383, 1033, 1516
MhlI	GDGCHC	3 cut(s)	134, 220, 231
MlsI	TGGCCA	1 cut(s)	2456
MluNI	TGGCCA	1 cut(s)	2456
MlyI	GAGTC	6 cut(s)	44, 154, 737, 1829, 1874, 1931
MmeI	TCCRAC	6 cut(s)	318, 573, 725, 1061, 1218, 2337
Mox20I	TGGCCA	1 cut(s)	2456
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	2456
MseI	TTAA	5 cut(s)	483, 873, 1167, 1302, 2555
MslI	CAYNNNNRTG	2 cut(s)	999, 1554
Msp20I	TGGCCA	1 cut(s)	2456
MspA1I	CMGCKG	5 cut(s)	257, 770, 800, 1991, 2267
MspI	CCGG	6 cut(s)	24, 38, 56, 90, 290, 942
MspR9I	CCNGG	7 cut(s)	56, 224, 521, 942, 943, 1400, 1476
MunI	CAATTG	1 cut(s)	532
Mva1269I	GAATGC	3 cut(s)	1394, 2430, 2467
MvaI	CCWGG	4 cut(s)	224, 521, 1400, 1476
MvnI	CGCG	6 cut(s)	15, 87, 165, 257, 390, 813
NciI	CCSGG	3 cut(s)	56, 942, 943
NcoI	CCATGG	1 cut(s)	1380
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	1115, 1704
NruI	TCGCGA	2 cut(s)	165, 390
PagI	TCATGA	4 cut(s)	994, 1549, 1741, 2380
PceI	AGGCCT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PctI	GAATGC	3 cut(s)	1394, 2430, 2467
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	8 cut(s)	445, 559, 617, 659, 890, 1010, 1469, 2584
Ple19I	CGATCG	1 cut(s)	668
PleI	GAGTC	6 cut(s)	44, 154, 736, 1828, 1873, 1931
PpsI	GAGTC	6 cut(s)	44, 154, 736, 1828, 1873, 1931
PpuMI	RGGWCCY	1 cut(s)	1415
Psp5II	RGGWCCY	1 cut(s)	1415
Psp6I	CCWGG	4 cut(s)	222, 519, 1398, 1474
PspGI	CCWGG	4 cut(s)	222, 519, 1398, 1474
PspOMI	GGGCCC	2 cut(s)	216, 227
PspPI	GGNCC	8 cut(s)	203, 216, 217, 227, 228, 764, 1415, 2484
PspPPI	RGGWCCY	1 cut(s)	1415
PstI	CTGCAG	4 cut(s)	1033, 1468, 2248, 2257
PstNI	CAGNNNCTG	4 cut(s)	2084, 2252, 2267, 2270
PsuI	RGATCY	3 cut(s)	383, 1033, 1516
PvuI	CGATCG	1 cut(s)	668
PvuII	CAGCTG	4 cut(s)	770, 800, 1991, 2267
RruI	TCGCGA	2 cut(s)	165, 390
RsaI	GTAC	2 cut(s)	779, 2176
RsaNI	GTAC	2 cut(s)	778, 2175
RseI	CAYNNNNRTG	2 cut(s)	999, 1554
SacII	CCGCGG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	483, 873, 1167, 1302, 2555
Sau96I	GGNCC	8 cut(s)	203, 216, 217, 227, 228, 764, 1415, 2484
SchI	GAGTC	6 cut(s)	44, 154, 737, 1829, 1874, 1931
ScrFI	CCNGG	7 cut(s)	56, 224, 521, 942, 943, 1400, 1476
SduI	GDGCHC	3 cut(s)	134, 220, 231
SfaNI	GCATC	4 cut(s)	382, 1063, 2027, 2427
SfcI	CTRYAG	6 cut(s)	1029, 1464, 2010, 2102, 2244, 2253
SfiI	GGCCNNNNNGGCC	1 cut(s)	763
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	1415
SmaI	CCCGGG	1 cut(s)	943
SmiMI	CAYNNNNRTG	2 cut(s)	999, 1554
SmlI	CTYRAG	1 cut(s)	1948
SmoI	CTYRAG	1 cut(s)	1948
SpeI	ACTAGT	1 cut(s)	1247
SseBI	AGGCCT	1 cut(s)	757
SspMI	CTAG	6 cut(s)	656, 989, 1248, 1545, 2288, 2418
StuI	AGGCCT	1 cut(s)	757
StyD4I	CCNGG	7 cut(s)	54, 222, 519, 940, 941, 1398, 1474
StyI	CCWWGG	2 cut(s)	1380, 2480
TaaI	ACNGT	4 cut(s)	147, 706, 1407, 2174
TatI	WGTACW	1 cut(s)	2174
TauI	GCSGC	5 cut(s)	87, 126, 257, 260, 289
TfiI	GAWTC	8 cut(s)	445, 559, 617, 659, 890, 1010, 1469, 2584
Tru1I	TTAA	5 cut(s)	483, 873, 1167, 1302, 2555
Tru9I	TTAA	5 cut(s)	483, 873, 1167, 1302, 2555
TscAI	CASTG	4 cut(s)	678, 1021, 1505, 2262
TseFI	GTSAC	2 cut(s)	1115, 1704
TseI	GCWGC	9 cut(s)	114, 272, 1391, 1562, 2243, 2264, 2267, 2324, 2465
Tsp45I	GTSAC	2 cut(s)	1115, 1704
TspDTI	ATGAA	8 cut(s)	126, 423, 557, 894, 1215, 1221, 1611, 2369
TspGWI	ACGGA	1 cut(s)	1973
TspMI	CCCGGG	1 cut(s)	941
TspRI	CASTG	4 cut(s)	678, 1021, 1505, 2262
VpaK11BI	GGWCC	1 cut(s)	1415
XagI	CCTNNNNNAGG	1 cut(s)	2506
XapI	RAATTY	5 cut(s)	548, 884, 1140, 1984, 2310
XbaI	TCTAGA	1 cut(s)	2417
XcmI	CCANNNNNNNNNTGG	3 cut(s)	403, 1633, 2536
XmaI	CCCGGG	1 cut(s)	941
XmiI	GTMKAC	2 cut(s)	731, 2009
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	6 cut(s)	656, 989, 1248, 1545, 2288, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.