Rw6G011040
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006872
Physical Location & Seq
Forward (+)
19478765 .. 19483628
4864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011040.1

Sequence Viewer

Length: 3000 bp
ATGGAAGAAAAACGCGGAGACGCCGGAACTCAGCCTCCGGCTAATGCCGCCGACTCTCCGGCCGCCGAGCCTACTTCTTCGAGACGCCGCGCCGGAGGCCAAAAGCGAAAGGCCAGCAGCCTCGGCGGCTCGGGCTCTTCATCAACACCGTCGAAACGCTTGACTCGCGAGAAGGCTTCGCTTTCTCACCCTCCGATCCACAACGGCCCGTTGACGAGGGCCCGCCAGGGGCCCAATAACCATGCGTCGGCCTCAGCCGCGGCCGTGAAGCCTGCTGCTCAGACGAAGCGGCCGGAGCAGTCGTCGGTGGAGGCGGAGCGGGCTAAAAGGGAGAGCGAGTTGGAGGCTTTGGAGGCTTCTATGGAAGCTGAGTTTGAAGCCATTAGATCTCGCGATGCCAATGCTCATGTGGTTCCCAGTCATTGTGGTTGGTTTTCATGGACAAAGATTCACGCCATTGAGGAGCGTATGTTGCCGTCTTTCTTTAATGGGAAGTCTGATGCTCGAACTCCCGATACATACCTGGAGATACGCAATTGTATTATGAAAAAATTCCATGCGAATCCGGGAACATTGGTTGATCTGAAGGATATGTTGGAGCTTGAAGTGGGAGACTTCGATTCAAGACAAGAAGTAATGGAATTTTTGGACCACTGGGGTTTGATAAATTTCCACCCTTTCCCACCAACAGGTTCTACTGTTGCAAATGTCAACAGTGATGAGGTGACAGAAAGGGATTCTTTGGTAGATAAGTTGTATCACTTTGAAGCACTAGAATCACGATCATCAGTGGTTCCTAAGACTAACTTATTTACTCCAACTGTGCCATCTGGTCTGTTCCCAGAGTCTACATTTGCTGACGAATTGGTGAGGCCTGAGGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCAAACGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGCTCTGATTGCTTTAACAACGGGAAATTCGACTCGGGTATGTCTTCATCAGATTTTATTCTTATGGAGCCTGCTGAGGCTCCTGGGGTAAGTGGTGGGAAGTGGACAGATCAGGAGACCCTCCTTCTCCTTGAAGCATTAGAATTATATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTCCTAGATCGTGATGATGATATTGATGCCAGTGCCAAAGAAACTGCAGATCCAACTTCAACTAACAATGATTTATTGCCCCCCAAAGATGCCCCCGAAACAACAGAGAATAAGACAAGTGCTAATGAGAGTGACCCTCAAACTTCCCCGATGGAAATTTCAAAAGAAGAAGCAAGTGAGGTTAAAGTTGGGGAGGATACTTCAAGGCCAGAAGATGAAAATGAAGTCAAAGTTGGTCAGGACACCTCGAAGTTGGAAGATACTGGTGATTTGAAAATTGATCAGGAAACAGATGAGAACCTTGCATTGAAGGCTCTTAAAGAAGCCTTTGAAGTTGTTGGTTATCCTCAAACACCTGAAAGTCAACTCTCATTTGCAGATGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTGGCACAGTTGGTGGGACCTGATCATGCCATTGCCTCGGCACATAATTCTTTGAAATCCATATCTGCAGATTCTCCTGGCATTGAGCTGGCTTCGAGGCACTGCTTTATTTTGGAAGATCCACCAAATGACAGAAAGGAACAAGCTAGTCATGATAGTGTTGCTGCTGAAAGGGAAGTGCAGAGTGAGAAAGTCGATGAAGAAAATTGTCATAAAGAGGATAACTCCACCTCAGGTTTGGAAGATAGAGGTGTATCAAATGATAACAACGACAAGAAACTTGAAGAAGTTACTCCTGAAGAAAAGTCACAATCTACAAAAGAACAAGATGACAGGGTTTCTCATGAGGAAGTAGGAACTGATAAATTGAACAAGTCAAACAACTCAGAGTTACCAAATGACCAACCACCAACTTTGGGGGAGTCAGATAATTCAAAAGTTGAGACACCACCAAGTTCAGTAAAGGAGTCGGGAGAGAGAACTTCAGTAGGACAGCCTTCTGAAACAGTAGAGACACCAATGGATGTGGATATGTCTGACTCCAATCCCTCAACGAAGACGGAGCCTCAGCAACCAGTTACATCAAATTCAGCTGAGGAACCTTCTCAGTCTACAGAGGCATCAAAAGAAGTGGATGTATCTAATGCTCTGCCTTCAGAAAGAGATGAGCCTCCACCACCAGTTACTGAAGAACCCCCTCAACCTACAGAAACATCAAAGGATGTTCTTATGGTGTGTGACTCTCAGCCCCCACAAGAGAATGAGCCTTCCCAACCAGTTGAAAACACTGCGAGTGAGGATCAGACTAATGATGGTAAACACGAGAAGCATGACTGTACAGACCCAAAAAATGATAAAAAGCAAGAGACAAAAGGCGAACAGAAGATTGATAAAATAAAGCAAGCTGCAGTTTCTGCAGTCTCAGCAGCTGCTGTGAAGGCAAAACTTCTAGCAGAACAGGAAGAAGATCAAATTCGACAGCTTGCAGCAATGTTGATAGAGAAGCAGTTGCATAAGTTGGAAGCCAAGTTAGGTTTCTTTCATGAGATGGAAAGTGTTGTGATGAGGGTAAAAGAGCAATTGGATAGGTCAAGACAGAAGCTCTACCATGAGCGGGCACAGATAATTGCTGCCCGACTTGGCTTACCAGGTTCCTCATCTAGAGGAATGCCATCTGCGATGCCTACCAATAGAATGGCCATGAATGCTGCAAACTCAGTTCCAAGGCCCCCACTTATGATGACCTCTCAAAGGCCACCCATGTCGAGACCCACAGGGGCGGTGGCTTCGACCCCTTTAAACCAATTTTCGTCCTCAGGAAGTGCGATTCGGCCTCCCAGTCAGGACAGCCTTTCTTCTATTGGGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

999

Amino Acids

109.19

Weight (kDa)

4.78

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 146 - 224 4.3e-21 SWIRM domain
ZZ PF00569 298 - 333 1.2e-08 Zinc finger, ZZ type
Myb_DNA-binding PF00249 356 - 398 4.4e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 358 - 398 1.3e-06 Myb-like DNA-binding domain
SWIRM-assoc_1 PF16495 847 - 922 1.3e-23 SWIRM-associated region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 319, 2740
AccI GTMKAC 2 cut(s) 848, 2237
AccII CGCG 5 cut(s) 15, 90, 168, 260, 393
AclWI GGATC 4 cut(s) 190, 1256, 1739, 2433
AcoI YGGCCR 4 cut(s) 60, 261, 290, 2823
AcsI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2598
AcuI CTGAAG 5 cut(s) 605, 1944, 2094, 2265, 2334
AcyI GRCGYC 2 cut(s) 21, 85
AfaI GTAC 2 cut(s) 896, 2464
AfiI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2740, 2877
AflIII ACRYGT 1 cut(s) 1147
AjnI CCWGG 6 cut(s) 225, 522, 1051, 1626, 1702, 2773
AjuI GAANNNNNNNTTGG 6 cut(s) 578, 610, 1428, 1460, 2645, 2677
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 9 cut(s) 12, 76, 606, 1079, 2063, 2132, 2486, 2551, 2887
AlwI GGATC 4 cut(s) 190, 1256, 1739, 2433
AlwNI CAGNNNCTG 4 cut(s) 2312, 2540, 2555, 2558
Ama87I CYCGRG 2 cut(s) 130, 1003
ApaI GGGCCC 2 cut(s) 223, 234
ApoI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2598
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2853
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 179, 736, 880, 1490
AvaI CYCGRG 2 cut(s) 130, 1003
AvaII GGWCC 2 cut(s) 649, 1643
AxyI CCTNAGG 3 cut(s) 876, 1858, 2941
BaeGI GKGCMC 3 cut(s) 223, 234, 2746
BalI TGGCCA 1 cut(s) 2825
BanII GRGCYC 3 cut(s) 137, 223, 234
BauI CACGAG 1 cut(s) 2447
BbsI GAAGAC 2 cut(s) 1005, 2189
Bbv12I GWGCWC 1 cut(s) 974
BbvCI CCTCAGC 4 cut(s) 253, 1044, 2193, 2220
BccI CCATC 5 cut(s) 835, 1357, 2432, 2668, 2806
BceAI ACGGC 3 cut(s) 220, 248, 460
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 6 cut(s) 227, 524, 1053, 1628, 1704, 2775
BciVI GTATCC 2 cut(s) 1201, 1402
BclI TGATCA 2 cut(s) 1492, 1648
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 9 cut(s) 12, 76, 606, 1079, 2063, 2132, 2486, 2551, 2887
BfaI CTAG 5 cut(s) 773, 1217, 1773, 2576, 2787
BfmI CTRYAG 6 cut(s) 1257, 1692, 2238, 2331, 2532, 2541
BfuI GTATCC 2 cut(s) 1201, 1402
BglI GCCNNNNNGGC 2 cut(s) 126, 880
BglII AGATCT 1 cut(s) 386
Bme1390I CCNGG 7 cut(s) 227, 524, 567, 1053, 1628, 1704, 2775
Bme18I GGWCC 2 cut(s) 649, 1643
BmeT110I CYCGRG 2 cut(s) 130, 1003
BmgT120I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2853
BmrFI CCNGG 7 cut(s) 227, 524, 567, 1053, 1628, 1704, 2775
BmrI ACTGGG 3 cut(s) 411, 664, 2958
BmsI GCATC 6 cut(s) 385, 490, 1228, 1291, 2255, 2796
BmuI ACTGGG 3 cut(s) 411, 664, 2958
BpiI GAAGAC 2 cut(s) 1005, 2189
BplI GAGNNNNNCTC 4 cut(s) 1333, 1365, 1835, 1867
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 4 cut(s) 253, 1044, 2193, 2220
BpuMI CCSGG 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 2 cut(s) 21, 85
BsaI GGTCTC 2 cut(s) 1079, 2887
BsaJI CCNNGG 7 cut(s) 121, 226, 258, 1052, 1608, 1662, 2849
BsaXI ACNNNNNCTCC 8 cut(s) 19, 49, 287, 317, 323, 353, 455, 485
Bsc4I CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2740, 2877
Bse1I ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2402, 2964
Bse21I CCTNAGG 3 cut(s) 876, 1858, 2941
Bse3DI GCAATG 4 cut(s) 898, 940, 1656, 2622
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 6 cut(s) 227, 524, 1053, 1628, 1704, 2775
BseDI CCNNGG 7 cut(s) 121, 226, 258, 1052, 1608, 1662, 2849
BseGI GGATG 3 cut(s) 2155, 2266, 2353
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2740, 2877
BseMI GCAATG 4 cut(s) 898, 940, 1656, 2622
BseNI ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2402, 2964
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 3 cut(s) 223, 234, 2746
BseX3I CGGCCG 3 cut(s) 60, 261, 290
BsgI GTGCAG 1 cut(s) 1826
Bsh1236I CGCG 5 cut(s) 15, 90, 168, 260, 393
Bsh1285I CGRYCG 3 cut(s) 63, 264, 293
BsiEI CGRYCG 3 cut(s) 63, 264, 293
BsiHKAI GWGCWC 1 cut(s) 974
BsiHKCI CYCGRG 2 cut(s) 130, 1003
BsiSI CCGG 6 cut(s) 24, 38, 59, 93, 293, 566
BslFI GGGAC 1 cut(s) 1656
BslI CCNNNNNNNGG 8 cut(s) 228, 247, 689, 952, 1609, 2042, 2740, 2877
BsmAI GTCTC 9 cut(s) 12, 76, 606, 1079, 2063, 2132, 2486, 2551, 2887
BsmBI CGTCTC 2 cut(s) 12, 76
BsmFI GGGAC 1 cut(s) 1656
BsmI GAATGC 3 cut(s) 1622, 2799, 2836
Bso31I GGTCTC 2 cut(s) 1079, 2887
BsoBI CYCGRG 2 cut(s) 130, 1003
Bsp120I GGGCCC 2 cut(s) 219, 230
Bsp1286I GDGCHC 5 cut(s) 137, 223, 234, 974, 2746
Bsp1407I TGTACA 1 cut(s) 2462
Bsp19I CCATGG 1 cut(s) 1608
Bsp68I TCGCGA 2 cut(s) 168, 393
BspFNI CGCG 5 cut(s) 15, 90, 168, 260, 393
BspHI TCATGA 3 cut(s) 1777, 1969, 2668
BspMAI CTGCAG 4 cut(s) 1261, 1696, 2536, 2545
BspPI GGATC 4 cut(s) 190, 1256, 1739, 2433
BspQI GCTCTTC 1 cut(s) 142
BspTNI GGTCTC 2 cut(s) 1079, 2887
BsrBI CCGCTC 2 cut(s) 319, 2740
BsrDI GCAATG 4 cut(s) 898, 940, 1656, 2622
BsrGI TGTACA 1 cut(s) 2462
BsrI ACTGG 9 cut(s) 417, 659, 1133, 1242, 1480, 2201, 2306, 2402, 2964
BssECI CCNNGG 7 cut(s) 121, 226, 258, 1052, 1608, 1662, 2849
BssNI GRCGYC 2 cut(s) 21, 85
BssSI CACGAG 1 cut(s) 2447
BssT1I CCWWGG 2 cut(s) 1608, 2849
Bst2BI CACGAG 1 cut(s) 2447
Bst2UI CCWGG 6 cut(s) 227, 524, 1053, 1628, 1704, 2775
Bst4CI ACNGT 7 cut(s) 150, 700, 716, 823, 1635, 2134, 2462
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 2 cut(s) 21, 85
BstAPI GCANNNNNTGC 1 cut(s) 2540
BstAUI TGTACA 1 cut(s) 2462
BstDSI CCRYGG 2 cut(s) 258, 1608
BstENI CCTNNNNNAGG 1 cut(s) 2875
BstF5I GGATG 3 cut(s) 2155, 2266, 2353
BstFNI CGCG 5 cut(s) 15, 90, 168, 260, 393
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 9 cut(s) 12, 76, 606, 1079, 2063, 2132, 2486, 2551, 2887
BstMCI CGRYCG 3 cut(s) 63, 264, 293
BstNI CCWGG 6 cut(s) 227, 524, 1053, 1628, 1704, 2775
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 7 cut(s) 225, 522, 565, 1051, 1626, 1702, 2773
BstSFI CTRYAG 6 cut(s) 1257, 1692, 2238, 2331, 2532, 2541
BstSLI GKGCMC 3 cut(s) 223, 234, 2746
BstUI CGCG 5 cut(s) 15, 90, 168, 260, 393
BstV2I GAAGAC 2 cut(s) 1005, 2189
BstX2I RGATCY 3 cut(s) 386, 1261, 1744
BstXI CCANNNNNNTGG 2 cut(s) 1615, 2821
BstYI RGATCY 3 cut(s) 386, 1261, 1744
BstZI CGGCCG 3 cut(s) 60, 261, 290
Bsu36I CCTNAGG 3 cut(s) 876, 1858, 2941
BsuI GTATCC 2 cut(s) 1201, 1402
BtgI CCRYGG 2 cut(s) 258, 1608
BtgZI GCGATG 2 cut(s) 408, 2819
BtsCI GGATG 3 cut(s) 2155, 2266, 2353
BtsI GCAGTG 2 cut(s) 1726, 2412
BtsIMutI CAGTG 7 cut(s) 652, 721, 795, 1178, 1249, 1726, 2412
BtuMI TCGCGA 2 cut(s) 168, 393
CaiI CAGNNNCTG 4 cut(s) 2312, 2540, 2555, 2558
CciI TCATGA 3 cut(s) 1777, 1969, 2668
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2853
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 3 cut(s) 29, 93, 234
CsiI ACCWGGT 1 cut(s) 2773
Csp6I GTAC 2 cut(s) 895, 2463
CspCI CAANNNNNGTGG 6 cut(s) 2022, 2057, 2133, 2168, 2238, 2273
CviQI GTAC 2 cut(s) 895, 2463
DraI TTTAAA 1 cut(s) 2925
EaeI YGGCCR 4 cut(s) 60, 261, 290, 2823
EagI CGGCCG 3 cut(s) 60, 261, 290
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 329
EclXI CGGCCG 3 cut(s) 60, 261, 290
Eco130I CCWWGG 2 cut(s) 1608, 2849
Eco147I AGGCCT 1 cut(s) 874
Eco24I GRGCYC 3 cut(s) 137, 223, 234
Eco31I GGTCTC 2 cut(s) 1079, 2887
Eco47I GGWCC 2 cut(s) 649, 1643
Eco52I CGGCCG 3 cut(s) 60, 261, 290
Eco57I CTGAAG 5 cut(s) 605, 1944, 2094, 2265, 2334
Eco81I CCTNAGG 3 cut(s) 876, 1858, 2941
Eco88I CYCGRG 2 cut(s) 130, 1003
EcoNI CCTNNNNNAGG 1 cut(s) 2875
EcoO109I RGGNCCY 4 cut(s) 219, 230, 1643, 2853
EcoRII CCWGG 6 cut(s) 225, 522, 1051, 1626, 1702, 2773
EcoT14I CCWWGG 2 cut(s) 1608, 2849
EcoT38I GRGCYC 3 cut(s) 137, 223, 234
ErhI CCWWGG 2 cut(s) 1608, 2849
Esp3I CGTCTC 2 cut(s) 12, 76
FalI AAGNNNNNCTT 4 cut(s) 724, 756, 791, 823
FaqI GGGAC 1 cut(s) 1656
FauI CCCGC 3 cut(s) 230, 312, 2733
FbaI TGATCA 2 cut(s) 1492, 1648
FblI GTMKAC 2 cut(s) 848, 2237
FokI GGATG 3 cut(s) 2162, 2273, 2360
FriOI GRGCYC 3 cut(s) 137, 223, 234
FspBI CTAG 5 cut(s) 773, 1217, 1773, 2576, 2787
GlaI GCGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 545
HapII CCGG 6 cut(s) 24, 38, 59, 93, 293, 566
HgaI GACGC 3 cut(s) 29, 93, 234
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 2 cut(s) 21, 85
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 3 cut(s) 213, 712, 1577
HindII GTYRAC 3 cut(s) 213, 712, 1577
HpaII CCGG 6 cut(s) 24, 38, 59, 93, 293, 566
HphI GGTGA 4 cut(s) 179, 736, 880, 1490
Hpy166II GTNNAC 7 cut(s) 213, 712, 849, 1074, 1577, 2238, 2444
Hpy8I GTNNAC 7 cut(s) 213, 712, 849, 1074, 1577, 2238, 2444
Hpy99I CGWCG 3 cut(s) 154, 250, 307
HpyCH4III ACNGT 7 cut(s) 150, 700, 716, 823, 1635, 2134, 2462
Hsp92I GRCGYC 2 cut(s) 21, 85
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 2 cut(s) 1492, 1648
KspI CCGCGG 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 7 cut(s) 295, 316, 463, 598, 1036, 1054, 2188
LweI GCATC 6 cut(s) 385, 490, 1228, 1291, 2255, 2796
MabI ACCWGGT 1 cut(s) 2773
MaeI CTAG 5 cut(s) 773, 1217, 1773, 2576, 2787
MaeIII GTNAC 8 cut(s) 724, 1343, 1915, 1932, 2016, 2203, 2308, 2363
MbiI CCGCTC 2 cut(s) 319, 2740
MfeI CAATTG 3 cut(s) 535, 1200, 2705
MflI RGATCY 3 cut(s) 386, 1261, 1744
MhlI GDGCHC 5 cut(s) 137, 223, 234, 974, 2746
MlsI TGGCCA 1 cut(s) 2825
MluNI TGGCCA 1 cut(s) 2825
MlyI GAGTC 8 cut(s) 47, 157, 854, 995, 2057, 2102, 2159, 2360
MmeI TCCRAC 6 cut(s) 321, 576, 842, 1289, 1446, 2625
Mox20I TGGCCA 1 cut(s) 2825
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 2825
MseI TTAA 5 cut(s) 486, 984, 1395, 1530, 2924
MslI CAYNNNNRTG 1 cut(s) 1782
Msp20I TGGCCA 1 cut(s) 2825
MspA1I CMGCKG 5 cut(s) 260, 887, 917, 2219, 2555
MspI CCGG 6 cut(s) 24, 38, 59, 93, 293, 566
MspR9I CCNGG 7 cut(s) 227, 524, 567, 1053, 1628, 1704, 2775
MunI CAATTG 3 cut(s) 535, 1200, 2705
Mva1269I GAATGC 3 cut(s) 1622, 2799, 2836
MvaI CCWGG 6 cut(s) 227, 524, 1053, 1628, 1704, 2775
MvnI CGCG 5 cut(s) 15, 90, 168, 260, 393
NciI CCSGG 1 cut(s) 567
NcoI CCATGG 1 cut(s) 1608
NmeAIII GCCGAG 3 cut(s) 91, 102, 1643
NmuCI GTSAC 4 cut(s) 724, 1343, 1932, 2363
NruI TCGCGA 2 cut(s) 168, 393
NspI RCATGY 1 cut(s) 1151
PagI TCATGA 3 cut(s) 1777, 1969, 2668
PceI AGGCCT 1 cut(s) 874
PciI ACATGT 1 cut(s) 1147
PciSI GCTCTTC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 996
PctI GAATGC 3 cut(s) 1622, 2799, 2836
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 7 cut(s) 448, 562, 620, 737, 776, 1697, 2953
PfoI TCCNGGA 1 cut(s) 565
PleI GAGTC 8 cut(s) 47, 157, 853, 995, 2056, 2101, 2159, 2360
PpsI GAGTC 8 cut(s) 47, 157, 853, 995, 2056, 2101, 2159, 2360
PpuMI RGGWCCY 1 cut(s) 1643
PscI ACATGT 1 cut(s) 1147
Psp5II RGGWCCY 1 cut(s) 1643
Psp6I CCWGG 6 cut(s) 225, 522, 1051, 1626, 1702, 2773
PspGI CCWGG 6 cut(s) 225, 522, 1051, 1626, 1702, 2773
PspOMI GGGCCC 2 cut(s) 219, 230
PspPI GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2853
PspPPI RGGWCCY 1 cut(s) 1643
PsrI GAACNNNNNNTAC 2 cut(s) 499, 531
PstI CTGCAG 4 cut(s) 1261, 1696, 2536, 2545
PstNI CAGNNNCTG 4 cut(s) 2312, 2540, 2555, 2558
PsuI RGATCY 3 cut(s) 386, 1261, 1744
PvuII CAGCTG 4 cut(s) 887, 917, 2219, 2555
RruI TCGCGA 2 cut(s) 168, 393
RsaI GTAC 2 cut(s) 896, 2464
RsaNI GTAC 2 cut(s) 895, 2463
RseI CAYNNNNRTG 1 cut(s) 1782
SacII CCGCGG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 5 cut(s) 486, 984, 1395, 1530, 2924
Sau96I GGNCC 9 cut(s) 206, 219, 220, 230, 231, 649, 881, 1643, 2853
SchI GAGTC 8 cut(s) 47, 157, 854, 995, 2057, 2102, 2159, 2360
ScrFI CCNGG 7 cut(s) 227, 524, 567, 1053, 1628, 1704, 2775
SduI GDGCHC 5 cut(s) 137, 223, 234, 974, 2746
SexAI ACCWGGT 1 cut(s) 2773
SfaNI GCATC 6 cut(s) 385, 490, 1228, 1291, 2255, 2796
SfcI CTRYAG 6 cut(s) 1257, 1692, 2238, 2331, 2532, 2541
SfiI GGCCNNNNNGGCC 1 cut(s) 880
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 2 cut(s) 649, 1643
SmiMI CAYNNNNRTG 1 cut(s) 1782
SseBI AGGCCT 1 cut(s) 874
SspMI CTAG 5 cut(s) 773, 1217, 1773, 2576, 2787
StuI AGGCCT 1 cut(s) 874
StyD4I CCNGG 7 cut(s) 225, 522, 565, 1051, 1626, 1702, 2773
StyI CCWWGG 2 cut(s) 1608, 2849
TaaI ACNGT 7 cut(s) 150, 700, 716, 823, 1635, 2134, 2462
TatI WGTACW 1 cut(s) 2462
TauI GCSGC 7 cut(s) 50, 65, 90, 129, 260, 263, 292
TfiI GAWTC 7 cut(s) 448, 562, 620, 737, 776, 1697, 2953
Tru1I TTAA 5 cut(s) 486, 984, 1395, 1530, 2924
Tru9I TTAA 5 cut(s) 486, 984, 1395, 1530, 2924
TscAI CASTG 7 cut(s) 659, 721, 795, 1178, 1249, 1733, 2419
TseFI GTSAC 4 cut(s) 724, 1343, 1932, 2363
Tsp45I GTSAC 4 cut(s) 724, 1343, 1932, 2363
TspDTI ATGAA 9 cut(s) 129, 426, 560, 1005, 1443, 1449, 1839, 2657, 2843
TspGWI ACGGA 1 cut(s) 2201
TspRI CASTG 7 cut(s) 659, 721, 795, 1178, 1249, 1733, 2419
VpaK11BI GGWCC 2 cut(s) 649, 1643
XagI CCTNNNNNAGG 1 cut(s) 2875
XapI RAATTY 7 cut(s) 551, 641, 667, 995, 1368, 2212, 2598
XbaI TCTAGA 1 cut(s) 2786
XceI RCATGY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 3 cut(s) 406, 1861, 2905
XmiI GTMKAC 2 cut(s) 848, 2237
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 5 cut(s) 773, 1217, 1773, 2576, 2787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.