Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Forward (+)

23634464 .. 23635573

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1149200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGTTGCTCAACGACAACGGTTACATTGAACTCAGCATTCCCGCGAAATTCAAATCCAAAACCCAGGGATTCCCAAAACCGGAGAGAAACAATCTCTCTAATACAAAAATGCAAACAATTTCATCAGGTTCCGCCAATCCACGCAAAAATCATAAGATATTTCCAAGTCCAAGACCCATTCGTCGTCTTCGAGCTTCTTCGCCTCTGCTCCAACCTCAACTCAATCGACCACGCCACCAAAATTTTCCAACAAATTCAAACCCCAAATGTCTACCTCTACACTGCTCTCATTAACGGGTTCGTGTCGACTGGGTTTTGCCTCGATGCGATTCGGGTTTACTGTCGAATGGACAACGAGTCTGTTTCACCGGATAACTACGCGGTAACTTCTGTGTTGAAAGCTTGTGGCTTTGGGTTGGCGTTGGAGGAGGGGAGAGGAGTCCATGCGCAGGTTTTGAAGCTTGGGTTGTCATCGAATCGCTCAGTGAGGATGAAGCTTCTGAATCTTTATGGAAAGTGTGGTGAATTTGAGCATGCACGGAGGGTGTTCGATGAAATGCCTGACAGGGATGTCGTTGCGTCAACAGTGATGATCACTTCTTTTGCTGATTATGGGTTGATTGAGGAGGCGATTGGGGTTTTTAACCGGGCTAGGAGTAAGGATACGATGAATAGGGCTTTGGAGGTGTTTAGGGAGATGCAGAGGAATAATGTGAGGCCTAATGAAGTTACTGTTGTTTGTGTTTTATCTGCTTGTTCGTATTTGGGAGCATTGGAGCTCGGAAGATGGGTTCACTCTTACATAGATAAGTATGACATCGAATTCAATTACATTGTAGGTGGTGCTCTGATTAATATGTGTTCGAGGTGTGGTGATATTGATGAGGCACTGGCAGTGTTTGGTAAGATGAAAGAGAGAGATGTGAGTAGTTATAATTCCATGATTGAGGGGCTTGCTATGCATGGGAAGAGCATTGAGGCTATCCAAATGTTCCAGACAATGATAAAACAAGGACCAAGGCCAAATAGCATTACTTTTGTTAAAAGTATTGAATGCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

355

Amino Acids

39.9

Weight (kDa)

8.39

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 136	7.3e-08	PPR repeat family
PPR	PF01535	283 - 309	6e-06	PPR repeat
PPR_2	PF13041	307 - 347	1.8e-08	PPR repeat family
PPR	PF01535	311 - 339	2.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AasI	GACNNNNNNGTC	2 cut(s)	182, 572
Acc16I	TGCGCA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	2 cut(s)	273, 308
AccII	CGCG	2 cut(s)	46, 383
AciI	CCGC	3 cut(s)	44, 134, 383
AcsI	RAATTY	5 cut(s)	49, 243, 255, 527, 824
AfiI	CCNNNNNNNGG	2 cut(s)	81, 451
AgsI	TTSAA	7 cut(s)	31, 54, 260, 400, 460, 829, 1055
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	5 cut(s)	196, 404, 463, 499, 781
AluI	AGCT	5 cut(s)	196, 404, 463, 499, 781
Alw21I	GWGCWC	2 cut(s)	783, 850
AoxI	GGCC	2 cut(s)	719, 1022
ApoI	RAATTY	5 cut(s)	49, 243, 255, 527, 824
AseI	ATTAAT	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	1016
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	3 cut(s)	360, 536, 887
AvaII	GGWCC	1 cut(s)	1016
BanII	GRGCYC	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	783, 850
BccI	CCATC	1 cut(s)	783
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	650
BfaI	CTAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	658
Bme1390I	CCNGG	2 cut(s)	67, 650
Bme18I	GGWCC	1 cut(s)	1016
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	1016
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	67, 650
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	316, 690
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	1062
BsaJI	CCNNGG	3 cut(s)	65, 66, 1019
BsaWI	WCCGGW	2 cut(s)	81, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 451
Bse1I	ACTGG	2 cut(s)	316, 897
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	65, 66, 1019
BseGI	GGATG	2 cut(s)	498, 577
BseLI	CCNNNNNNNGG	2 cut(s)	81, 451
BseMII	CTCAG	2 cut(s)	48, 498
BseNI	ACTGG	2 cut(s)	316, 897
BseRI	GAGGAG	3 cut(s)	443, 453, 641
Bsh1236I	CGCG	2 cut(s)	46, 383
BshFI	GGCC	2 cut(s)	721, 1024
BsiHKAI	GWGCWC	2 cut(s)	783, 850
BsiSI	CCGG	3 cut(s)	82, 371, 649
BslI	CCNNNNNNNGG	2 cut(s)	81, 451
BsmI	GAATGC	2 cut(s)	38, 1061
BsnI	GGCC	2 cut(s)	721, 1024
Bsp1286I	GDGCHC	2 cut(s)	783, 850
Bsp143I	GATC	1 cut(s)	594
BspACI	CCGC	3 cut(s)	44, 134, 383
BspANI	GGCC	2 cut(s)	721, 1024
BspCNI	CTCAG	2 cut(s)	47, 497
BspFNI	CGCG	2 cut(s)	46, 383
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	316, 897
BssECI	CCNNGG	3 cut(s)	65, 66, 1019
BssMI	GATC	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	1019
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	22, 344, 589, 736
Bst6I	CTCTTC	1 cut(s)	965
BstBAI	YACGTR	1 cut(s)	1062
BstC8I	GCNNGC	2 cut(s)	537, 957
BstDEI	CTNAG	2 cut(s)	34, 484
BstF5I	GGATG	2 cut(s)	498, 577
BstFNI	CGCG	2 cut(s)	46, 383
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	597
BstMBI	GATC	1 cut(s)	594
BstMWI	GCNNNNNNNGC	1 cut(s)	961
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	65, 648
BstUI	CGCG	2 cut(s)	46, 383
BstV2I	GAAGAC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	721, 1024
BtsCI	GGATG	2 cut(s)	498, 577
BtsI	GCAGTG	2 cut(s)	282, 903
BtsIMutI	CAGTG	5 cut(s)	282, 492, 594, 890, 903
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	537, 957
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	1016
CseI	GACGC	1 cut(s)	570
CviAII	CATG	4 cut(s)	446, 536, 943, 965
DdeI	CTNAG	2 cut(s)	34, 484
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
DrdI	GACNNNNNNGTC	2 cut(s)	182, 572
DriI	GACNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	2 cut(s)	182, 572
Eam1104I	CTCTTC	1 cut(s)	965
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	965
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	1019
Eco147I	AGGCCT	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	1016
Eco53kI	GAGCTC	1 cut(s)	781
EcoICRI	GAGCTC	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	1019
EcoT22I	ATGCAT	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	1019
FaeI	CATG	4 cut(s)	449, 539, 946, 968
FatI	CATG	4 cut(s)	445, 535, 942, 964
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	2 cut(s)	273, 308
FokI	GGATG	2 cut(s)	505, 584
FriOI	GRGCYC	1 cut(s)	783
FspBI	CTAG	1 cut(s)	654
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	721, 1024
HapII	CCGG	3 cut(s)	82, 371, 649
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	449, 539, 946, 968
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	2 cut(s)	309, 585
HindII	GTYRAC	2 cut(s)	309, 585
HindIII	AAGCTT	3 cut(s)	402, 461, 497
HinfI	GANTC	6 cut(s)	71, 331, 359, 441, 478, 505
HpaII	CCGG	3 cut(s)	82, 371, 649
HphI	GGTGA	3 cut(s)	360, 536, 887
Hpy166II	GTNNAC	5 cut(s)	274, 309, 340, 585, 796
Hpy188I	TCNGA	3 cut(s)	504, 785, 852
Hpy188III	TCNNGA	1 cut(s)	997
Hpy8I	GTNNAC	5 cut(s)	274, 309, 340, 585, 796
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	4 cut(s)	22, 344, 589, 736
HpyCH4IV	ACGT	1 cut(s)	1061
HpyCH4V	TGCA	5 cut(s)	114, 539, 703, 964, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	961
HpyF3I	CTNAG	2 cut(s)	34, 484
HpySE526I	ACGT	1 cut(s)	1061
Hsp92II	CATG	4 cut(s)	449, 539, 946, 968
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	594
LguI	GCTCTTC	1 cut(s)	965
LmnI	GCTCC	3 cut(s)	215, 770, 778
LweI	GCATC	2 cut(s)	316, 690
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	1061
MaeIII	GTNAC	3 cut(s)	22, 385, 730
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MboII	GAAGA	4 cut(s)	181, 191, 798, 982
MhlI	GDGCHC	2 cut(s)	783, 850
MluCI	AATT	8 cut(s)	49, 119, 243, 255, 527, 824, 829, 937
MlyI	GAGTC	2 cut(s)	368, 450
MmeI	TCCRAC	3 cut(s)	237, 274, 405
Mph1103I	ATGCAT	1 cut(s)	966
MseI	TTAA	4 cut(s)	294, 645, 855, 1044
MspI	CCGG	3 cut(s)	82, 371, 649
MspR9I	CCNGG	2 cut(s)	67, 650
Mva1269I	GAATGC	2 cut(s)	38, 1061
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	2 cut(s)	46, 383
MwoI	GCNNNNNNNGC	1 cut(s)	961
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	1 cut(s)	594
NlaIII	CATG	4 cut(s)	449, 539, 946, 968
NlaIV	GGNNCC	1 cut(s)	132
NsbI	TGCGCA	1 cut(s)	450
NsiI	ATGCAT	1 cut(s)	966
NspI	RCATGY	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	539
PasI	CCCWGGG	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	38, 1061
PfeI	GAWTC	4 cut(s)	71, 331, 478, 505
PleI	GAGTC	2 cut(s)	367, 449
PpsI	GAGTC	2 cut(s)	367, 449
Ppu21I	YACGTR	1 cut(s)	1062
PshBI	ATTAAT	1 cut(s)	855
PsiI	TTATAA	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	1016
SacI	GAGCTC	1 cut(s)	783
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	965
SaqAI	TTAA	4 cut(s)	294, 645, 855, 1044
Sau3AI	GATC	1 cut(s)	594
Sau96I	GGNCC	1 cut(s)	1016
SchI	GAGTC	2 cut(s)	368, 450
ScrFI	CCNGG	2 cut(s)	67, 650
SduI	GDGCHC	2 cut(s)	783, 850
SfaNI	GCATC	2 cut(s)	316, 690
SinI	GGWCC	1 cut(s)	1016
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	8 cut(s)	49, 119, 243, 255, 527, 824, 829, 937
SseBI	AGGCCT	1 cut(s)	721
SsiI	CCGC	3 cut(s)	44, 134, 383
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	783
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	65, 648
StyI	CCWWGG	1 cut(s)	1019
TaaI	ACNGT	4 cut(s)	22, 344, 589, 736
TaiI	ACGT	1 cut(s)	1064
TaqI	TCGA	9 cut(s)	192, 228, 308, 324, 346, 476, 552, 822, 866
TasI	AATT	8 cut(s)	49, 119, 243, 255, 527, 824, 829, 937
TfiI	GAWTC	4 cut(s)	71, 331, 478, 505
Tru1I	TTAA	4 cut(s)	294, 645, 855, 1044
Tru9I	TTAA	4 cut(s)	294, 645, 855, 1044
TscAI	CASTG	5 cut(s)	289, 492, 594, 897, 903
TspDTI	ATGAA	6 cut(s)	113, 509, 570, 686, 741, 926
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	5 cut(s)	289, 492, 594, 897, 903
VpaK11BI	GGWCC	1 cut(s)	1016
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	5 cut(s)	49, 243, 255, 527, 824
XceI	RCATGY	1 cut(s)	539
XmiI	GTMKAC	2 cut(s)	273, 308
XspI	CTAG	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.