Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Forward (+)

44530734 .. 44532907

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG254600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGCAAAGTGGGTTGTGCCACTCTTCCACATTATTGGCCGCCAATAATATGAGTTGCTCAACCACGGTGGCTATAGGGAACTCAGTATTCCCGCCAAATTCAAACTCAAAATCCAGAAATTCCCAAAATCGGAGAGAAGTCATCTCCCTGTTGCAGAAATGCAAACACTATCAGATCCCACAAATACATGCTAAAATAATAAGAAATGGCCAGGACCAAGATCCATTCGTCGTCTTCGAGCTTCTTCGTCTCTGCTCCAACCTCAAGTCCATTGACTATGCCTCCAAGGTTTTCCGACGCACCCAATCCCCAAACGTGTATCTCTACACTGCTCTCATTGATGGGTTTGTGTCGTCTGGCTATTACCTTGATGCGATTCGTCTTTACTGTCAGATGGTCAATGAGTTTATATTTCCGGACAAATATGCCATCACTTCTGTGTTGAAAGCTTGTGGCTTTGGGTTGGCTTTGGAGGAGGGTAGAGAAGTCCATGCCCAGGCTTTGAAGCTTGGGTTGTCCTCGAATAGATCAATAAGGATGAAGCTGATGGGTCTTTATGGAAAGTGTGGTGAATTTGAAAGTGCACGCCAGGTGTTTGATGAAATGCCTGAAGGAGATGCAGTTGCGGCAACCGTCATGATAACTTGTTATGCTGAGTATGGACTAGTTGAGGAGGCGAGTGGTGTTTTTGACGGGCTCAGGGAAAAGGATACGGTTTGCTGGACTGCGATGATTGATGGGTTGGTTAAGAATGGGGAGATGAATAGGGCTTTGGAGGTGTTTAGGGATATGCAGAGGAAGAATGTGTGGCCTAATGAAGTTACATTGGTTTGTGTTCTATCTGCTTGTTCGCATTTGGGAGCTTTGGAGCTCGGACGATGGGTTTGCTCGTATATAGATAAGAATAACATTGAATGCAATTGCATTGTGGGTGGTGCTCTGATTAATATGTATTCAAGGTGTGGTGATATTGATGGGGCAGTAGAGGTGTTTAGCAGGATGAAAAAGAGAGATGTCAGTACCTATAATTCCATGATTGAGGGGCTTGCTATGCATGGGAAGAGCACCATGGCTATTGAAATGTTCCGGGAAATGATGAAACGAGGACTTAAGCCAAATAGCATCACTTTTGTTAAAGTATTAAATGCATGTAGCCATGGGGGTTTGGTGGAGTTGGGGTTTGAGATATTTCATTCCATGACTAATAGTCACGGCATTCAACCGCAAATAGAACACTATGGATGCGTGGTTGATCTTCTAGCTCGTTCAGGACGGATTGAAGAGGCGTACAGTTTCATTGAAAGAACGAAAATGGCACCAGATCATATCATGTTGGGGGCTTTGCTAAGTGCTTGTAAAATCCACCGAAACCTCGAATTAGGAGAAAGGGTGGCCGAAATGTTGGTAAACTGTGATGATGCAGATTCAGGGACTTTCGCTTTACTGTCAAATGTGTATGCTGCATCAGGGAAGTGGAAAGAGGCTGCACGAGTCAGAGCTTTGACCAAGGAAGCTGGAACTCCAAAGGAGCCTGGTTGTAGTTTAATTGAAGTGAACAATGAGATCCATGAGTTCCTTTTGGGAGACATTAGACACCCACAGAAAGAAAATATCTACAGAAAGTTAGAGGAGCTAAACCCTGTGTTAAAAAGGGAAGGATACTCGCCGGCGACAGAGGTAGTTTTGCATGATATTGGGGAAAGGCAAAAGGAATGGGCTCTAGCAATACATAGTGAGAGGCTTGCCATATGCTACGGACTAATCTCTACTAAACCGTGTACCACTTTAAGGATTGTGAAAAATTTGAGGGTTTGCAATGACTGCCACTCAATGATCAAGTTGATAGCTAAGATTACTAAGAGAAAGATAATAATGAGGGATCGCCATAGGTTCCATCATTTCGAGAATGGAGCTTGTTCTTGTGGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

645

Amino Acids

72.35

Weight (kDa)

8.05

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	2.3e-08	PPR repeat family
PPR_2	PF13041	236 - 284	3.6e-13	PPR repeat family
PPR	PF01535	239 - 269	1.9e-08	PPR repeat
PPR_long	PF17177	316 - 434	5.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	337 - 385	1.4e-13	PPR repeat family
PPR_3	PF13812	337 - 384	1.4e-07	Pentatricopeptide repeat domain
PPR	PF01535	340 - 370	1.1e-07	PPR repeat
E_motif	PF20431	455 - 517	2.6e-17	E motif
DYW_deaminase	PF14432	553 - 645	1.6e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1315
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	39, 92, 626, 1223
AclWI	GGATC	4 cut(s)	169, 215, 1558, 1887
AcoI	YGGCCR	3 cut(s)	36, 208, 1392
AcsI	RAATTY	4 cut(s)	97, 118, 572, 1801
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	3 cut(s)	1021, 1289, 1780
AfiI	CCNNNNNNNGG	3 cut(s)	129, 496, 1788
AflII	CTTAAG	1 cut(s)	1109
AflIII	ACRYGT	1 cut(s)	315
AhdI	GACNNNNNGTC	1 cut(s)	1206
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	4 cut(s)	210, 495, 588, 1531
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AleI	CACNNNNGTG	1 cut(s)	437
Alw21I	GWGCWC	4 cut(s)	586, 873, 940, 1067
Alw26I	GTCTC	2 cut(s)	254, 1578
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	4 cut(s)	169, 215, 1558, 1887
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	4 cut(s)	36, 208, 809, 1392
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	1460, 1484
ApoI	RAATTY	4 cut(s)	97, 118, 572, 1801
ArsI	GACNNNNNNTTYG	2 cut(s)	867, 899
AseI	ATTAAT	1 cut(s)	945
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	3 cut(s)	581, 977, 1937
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	1315
BanII	GRGCYC	3 cut(s)	699, 873, 1720
BauI	CACGAG	1 cut(s)	1488
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	4 cut(s)	586, 873, 940, 1067
BbvI	GCAGC	2 cut(s)	1447, 1471
BccI	CCATC	8 cut(s)	335, 388, 437, 541, 731, 873, 968, 1902
BceAI	ACGGC	1 cut(s)	1228
BcgI	CGANNNNNNTGC	2 cut(s)	867, 901
BciT130I	CCWGG	4 cut(s)	212, 497, 590, 1533
BciVI	GTATCC	2 cut(s)	703, 1652
BclI	TGATCA	1 cut(s)	1833
BcnI	CCSGG	1 cut(s)	1088
BcoDI	GTCTC	2 cut(s)	254, 1578
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	3 cut(s)	665, 1259, 1721
BfmI	CTRYAG	2 cut(s)	72, 1615
BfrI	CTTAAG	1 cut(s)	1109
BfuI	GTATCC	2 cut(s)	703, 1652
BisI	GCNGC	4 cut(s)	39, 627, 1461, 1485
BlsI	GCNGC	4 cut(s)	40, 628, 1462, 1486
Bme1390I	CCNGG	5 cut(s)	212, 497, 590, 1088, 1533
Bme18I	GGWCC	1 cut(s)	214
BmeRI	GACNNNNNGTC	1 cut(s)	1206
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	1317, 1530, 1892
BmrFI	CCNGG	5 cut(s)	212, 497, 590, 1088, 1533
BmsI	GCATC	6 cut(s)	361, 607, 1131, 1232, 1408, 1472
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	1088
BsaJI	CCNNGG	6 cut(s)	63, 285, 495, 1068, 1156, 1506
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	8 cut(s)	266, 296, 606, 636, 1163, 1193, 1374, 1404
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 496, 1788
Bse118I	RCCGGY	1 cut(s)	1666
Bse1I	ACTGG	1 cut(s)	1937
Bse3DI	GCAATG	1 cut(s)	1822
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	4 cut(s)	212, 497, 590, 1533
BseDI	CCNNGG	6 cut(s)	63, 285, 495, 1068, 1156, 1506
BseGI	GGATG	3 cut(s)	543, 1005, 1247
BseLI	CCNNNNNNNGG	3 cut(s)	129, 496, 1788
BseMI	GCAATG	1 cut(s)	1822
BseMII	CTCAG	3 cut(s)	96, 645, 712
BseNI	ACTGG	1 cut(s)	1937
BseRI	GAGGAG	3 cut(s)	488, 686, 1643
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	1447, 1471
BsgI	GTGCAG	1 cut(s)	1470
BshFI	GGCC	4 cut(s)	38, 210, 811, 1394
BshNI	GGYRCC	1 cut(s)	1315
BsiHKAI	GWGCWC	4 cut(s)	586, 873, 940, 1067
BsiSI	CCGG	3 cut(s)	416, 1087, 1667
BslFI	GGGAC	1 cut(s)	1444
BslI	CCNNNNNNNGG	3 cut(s)	129, 496, 1788
BsmAI	GTCTC	2 cut(s)	254, 1578
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	1444
BsmI	GAATGC	2 cut(s)	920, 1215
BsnI	GGCC	4 cut(s)	38, 210, 811, 1394
Bsp1286I	GDGCHC	6 cut(s)	586, 699, 873, 940, 1067, 1720
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
Bsp19I	CCATGG	2 cut(s)	1068, 1156
BspACI	CCGC	4 cut(s)	39, 92, 626, 1223
BspANI	GGCC	4 cut(s)	38, 210, 811, 1394
BspCNI	CTCAG	3 cut(s)	95, 646, 711
BspEI	TCCGGA	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	3 cut(s)	1317, 1530, 1892
BspPI	GGATC	4 cut(s)	169, 215, 1558, 1887
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	1315
BspTI	CTTAAG	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	1822
BsrFI	RCCGGY	1 cut(s)	1666
BsrI	ACTGG	1 cut(s)	1937
BssAI	RCCGGY	1 cut(s)	1666
BssECI	CCNNGG	6 cut(s)	63, 285, 495, 1068, 1156, 1506
BssMI	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
BssSI	CACGAG	1 cut(s)	1488
BssT1I	CCWWGG	4 cut(s)	285, 1068, 1156, 1506
Bst2BI	CACGAG	1 cut(s)	1488
Bst2UI	CCWGG	4 cut(s)	212, 497, 590, 1533
Bst4CI	ACNGT	8 cut(s)	67, 389, 634, 715, 1292, 1412, 1446, 1776
Bst6I	CTCTTC	3 cut(s)	28, 1055, 1275
BstAFI	CTTAAG	1 cut(s)	1109
BstAPI	GCANNNNNTGC	1 cut(s)	1821
BstC8I	GCNNGC	4 cut(s)	586, 1047, 1668, 1743
BstDEI	CTNAG	6 cut(s)	82, 654, 698, 1346, 1848, 1857
BstDSI	CCRYGG	3 cut(s)	63, 1068, 1156
BstF5I	GGATG	3 cut(s)	543, 1005, 1247
BstKTI	GATC	8 cut(s)	177, 223, 530, 1255, 1324, 1566, 1836, 1882
BstMAI	GTCTC	2 cut(s)	254, 1578
BstMBI	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 1051, 1821
BstNI	CCWGG	4 cut(s)	212, 497, 590, 1533
BstNSI	RCATGY	2 cut(s)	191, 1152
BstSCI	CCNGG	5 cut(s)	210, 495, 588, 1086, 1531
BstSFI	CTRYAG	2 cut(s)	72, 1615
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	1447, 1471
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	3 cut(s)	174, 220, 1563
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	3 cut(s)	174, 220, 1563
BsuI	GTATCC	2 cut(s)	703, 1652
BsuRI	GGCC	4 cut(s)	38, 210, 811, 1394
BtgI	CCRYGG	3 cut(s)	63, 1068, 1156
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	543, 1005, 1247
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	4 cut(s)	586, 1047, 1668, 1743
CciI	TCATGA	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	1666
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	1020, 1288, 1779
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviQI	GTAC	3 cut(s)	1020, 1288, 1779
DdeI	CTNAG	6 cut(s)	82, 654, 698, 1346, 1848, 1857
DpnI	GATC	8 cut(s)	176, 222, 529, 1254, 1323, 1565, 1835, 1881
DpnII	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
DriI	GACNNNNNGTC	1 cut(s)	1206
EaeI	YGGCCR	3 cut(s)	36, 208, 1392
Eam1104I	CTCTTC	3 cut(s)	28, 1055, 1275
Eam1105I	GACNNNNNGTC	1 cut(s)	1206
EarI	CTCTTC	3 cut(s)	28, 1055, 1275
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	4 cut(s)	285, 1068, 1156, 1506
Eco24I	GRGCYC	3 cut(s)	699, 873, 1720
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	210, 495, 588, 1531
EcoT14I	CCWWGG	4 cut(s)	285, 1068, 1156, 1506
EcoT22I	ATGCAT	2 cut(s)	1056, 1150
EcoT38I	GRGCYC	3 cut(s)	699, 873, 1720
ErhI	CCWWGG	4 cut(s)	285, 1068, 1156, 1506
Esp3I	CGTCTC	1 cut(s)	254
FaqI	GGGAC	1 cut(s)	1444
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	1748
FbaI	TGATCA	1 cut(s)	1833
Fnu4HI	GCNGC	4 cut(s)	39, 627, 1461, 1485
FokI	GGATG	3 cut(s)	550, 1012, 1254
FriOI	GRGCYC	3 cut(s)	699, 873, 1720
Fsp4HI	GCNGC	4 cut(s)	39, 627, 1461, 1485
FspBI	CTAG	3 cut(s)	665, 1259, 1721
GluI	GCNGC	4 cut(s)	39, 627, 1461, 1485
HaeIII	GGCC	4 cut(s)	38, 210, 811, 1394
HapII	CCGG	3 cut(s)	416, 1087, 1667
HgaI	GACGC	1 cut(s)	306
HindIII	AAGCTT	2 cut(s)	447, 506
HinfI	GANTC	3 cut(s)	376, 1424, 1491
HpaII	CCGG	3 cut(s)	416, 1087, 1667
HphI	GGTGA	3 cut(s)	581, 977, 1937
Hpy166II	GTNNAC	4 cut(s)	584, 1408, 1555, 1779
Hpy188I	TCNGA	7 cut(s)	132, 174, 296, 393, 875, 942, 1496
Hpy188III	TCNNGA	5 cut(s)	114, 416, 637, 1269, 1903
Hpy8I	GTNNAC	4 cut(s)	584, 1408, 1555, 1779
Hpy99I	CGWCG	2 cut(s)	233, 300
HpyAV	CCTTC	2 cut(s)	605, 1649
HpyCH4III	ACNGT	8 cut(s)	67, 389, 634, 715, 1292, 1412, 1446, 1776
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 1051, 1821
HpyF3I	CTNAG	6 cut(s)	82, 654, 698, 1346, 1848, 1857
HpySE526I	ACGT	1 cut(s)	315
Kpn2I	TCCGGA	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	1666
KroNI	GCCGGC	1 cut(s)	1668
Ksp22I	TGATCA	1 cut(s)	1833
Kzo9I	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	6 cut(s)	260, 860, 868, 1528, 1630, 1910
Lsp1109I	GCAGC	2 cut(s)	1447, 1471
LweI	GCATC	6 cut(s)	361, 607, 1131, 1232, 1408, 1472
MaeI	CTAG	3 cut(s)	665, 1259, 1721
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	820, 1208
MalI	GATC	8 cut(s)	176, 222, 529, 1254, 1323, 1565, 1835, 1881
MboI	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
MboII	GAAGA	7 cut(s)	15, 226, 236, 811, 1072, 1247, 1292
MfeI	CAATTG	1 cut(s)	919
MflI	RGATCY	3 cut(s)	174, 220, 1563
MhlI	GDGCHC	6 cut(s)	586, 699, 873, 940, 1067, 1720
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	8 cut(s)	97, 118, 572, 919, 1027, 1376, 1545, 1801
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	1500
MmeI	TCCRAC	2 cut(s)	282, 319
Mox20I	TGGCCA	1 cut(s)	210
Mph1103I	ATGCAT	2 cut(s)	1056, 1150
MreI	CGCCGGCG	1 cut(s)	1666
MroI	TCCGGA	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	1666
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	8 cut(s)	747, 945, 1110, 1134, 1142, 1544, 1646, 1787
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	416, 1087, 1667
MspR9I	CCNGG	5 cut(s)	212, 497, 590, 1088, 1533
MunI	CAATTG	1 cut(s)	919
Mva1269I	GAATGC	2 cut(s)	920, 1215
MvaI	CCWGG	4 cut(s)	212, 497, 590, 1533
MwoI	GCNNNNNNNGC	3 cut(s)	626, 1051, 1821
NaeI	GCCGGC	1 cut(s)	1668
NciI	CCSGG	1 cut(s)	1088
NcoI	CCATGG	2 cut(s)	1068, 1156
NdeI	CATATG	1 cut(s)	1748
NdeII	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
NgoMIV	GCCGGC	1 cut(s)	1666
NlaIV	GGNNCC	3 cut(s)	1317, 1530, 1892
NmuCI	GTSAC	1 cut(s)	1208
NsiI	ATGCAT	2 cut(s)	1056, 1150
NspI	RCATGY	2 cut(s)	191, 1152
OliI	CACNNNNGTG	1 cut(s)	437
PagI	TCATGA	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	920, 1215
PdiI	GCCGGC	1 cut(s)	1668
PfeI	GAWTC	2 cut(s)	376, 1424
PfoI	TCCNGGA	1 cut(s)	1086
PkrI	GCNGC	4 cut(s)	40, 628, 1462, 1486
PleI	GAGTC	1 cut(s)	1499
PpsI	GAGTC	1 cut(s)	1499
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	4 cut(s)	210, 495, 588, 1531
PspGI	CCWGG	4 cut(s)	210, 495, 588, 1531
PspN4I	GGNNCC	3 cut(s)	1317, 1530, 1892
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	3 cut(s)	174, 220, 1563
RsaI	GTAC	3 cut(s)	1021, 1289, 1780
RsaNI	GTAC	3 cut(s)	1020, 1288, 1779
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	873
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	8 cut(s)	747, 945, 1110, 1134, 1142, 1544, 1646, 1787
SatI	GCNGC	4 cut(s)	39, 627, 1461, 1485
Sau3AI	GATC	8 cut(s)	174, 220, 527, 1252, 1321, 1563, 1833, 1879
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	1500
ScrFI	CCNGG	5 cut(s)	212, 497, 590, 1088, 1533
SduI	GDGCHC	6 cut(s)	586, 699, 873, 940, 1067, 1720
SfaNI	GCATC	6 cut(s)	361, 607, 1131, 1232, 1408, 1472
SfcI	CTRYAG	2 cut(s)	72, 1615
SgrAI	CRCCGGYG	1 cut(s)	1666
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	263, 1109
SmoI	CTYRAG	2 cut(s)	263, 1109
SpeI	ACTAGT	1 cut(s)	664
Sse9I	AATT	8 cut(s)	97, 118, 572, 919, 1027, 1376, 1545, 1801
SsiI	CCGC	4 cut(s)	39, 92, 626, 1223
SspMI	CTAG	3 cut(s)	665, 1259, 1721
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	5 cut(s)	210, 495, 588, 1086, 1531
StyI	CCWWGG	4 cut(s)	285, 1068, 1156, 1506
TaaI	ACNGT	8 cut(s)	67, 389, 634, 715, 1292, 1412, 1446, 1776
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	4 cut(s)	237, 521, 1374, 1902
TasI	AATT	8 cut(s)	97, 118, 572, 919, 1027, 1376, 1545, 1801
TauI	GCSGC	2 cut(s)	41, 629
TfiI	GAWTC	2 cut(s)	376, 1424
Tru1I	TTAA	8 cut(s)	747, 945, 1110, 1134, 1142, 1544, 1646, 1787
Tru9I	TTAA	8 cut(s)	747, 945, 1110, 1134, 1142, 1544, 1646, 1787
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	1208
TseI	GCWGC	2 cut(s)	1460, 1484
Tsp45I	GTSAC	1 cut(s)	1208
TspDTI	ATGAA	8 cut(s)	554, 615, 776, 831, 1016, 1112, 1181, 1285
TspGWI	ACGGA	2 cut(s)	1288, 1770
TspRI	CASTG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	1109
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	4 cut(s)	97, 118, 572, 1801
XceI	RCATGY	2 cut(s)	191, 1152
XspI	CTAG	3 cut(s)	665, 1259, 1721
Zsp2I	ATGCAT	2 cut(s)	1056, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.