Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Reverse (-)

23499131 .. 23503706

Gene Structure 4576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGGGACACTTTTCAGCTACGGATGAGAATCTAGGATTCCAGTCTGGAGTTCCCATACCGGGACTGAATCCTCCATCAAATCAGTTTGGAAATGCATTTTGTGGAGCTGGGTCGGGACTCATTCGAGAGGGATTGGGTGCTTATGGGAAGAGAATTTGTGGATCAAGTTCACAGTATGTGCAAAGCAATATAATTAAGTGCTTCTCGGATCCTCAATACTACTTCCAAGTGAATGCGCACTATGTCAGGAACAAACTGAAGATAATTCTATTTCCATTTCTTCACAGGGGACACTGGACCAGGATAACAGAGCCAATTGGAGGCAGGCTTTCCTATAATCCTCCAATTAATGACATAAATGCTCCAGATTTGTACATTCCATTCATGACATTTGCGACATACTTGGTTCTTGCTGGCATCTGTCTTGGCCTTTCTGGGAAATTTAGTCCAGAAGCCTTAAATTGGCAGTTTGTGAAAGGAATGGCAAGCTGGTTATTCCAAGCAATGTTGTTGAAGGCATCATTGACTTCGCTAGGCGGTGGAGAGGCACCATTGTTGGACATGATAGCATATGCTGGGTATACATTCACGGGGCTGTGTGTGGCTGTTGTAGGGAGAATTACATTAAGCTATGCGTACTACTTGATAGTCATATGGACATCCATGTGCTCAGGCATCTTCTTGGCTAAGACGATTAAGCTAACTTTGTATGCCGAGGCTAGGAGTTACGATGTCACCATCCATAACTATCTCTTGCTTGAACTCATTGCTCAGATACTTGTGGTAGCAAGCATACTAGATCTTCCACCTTGGCATAACTTGAGGCACGTCTATGCAAAGTGGGTTGTGCCACTCTTCACATTATTGGCCGCCAATAATATGAGTTGCTCAACCACGGTGGCTGTAGGGAACTCAGTATTCCCGCCAAATTCAAACTCAAAACCCAGAAATTCCCAAAACCGGAGAGAAGTCATCTCCCTGTTGCAGAAATGCAAACACTATCAAATCCCACAAATACATGCTAAAATAATAAGAAATGGCCAGGACCAAGACCCATTCGTCGTCTTCGAGCTCCTTCGTCTCTGCTCCAACCTCAACTCCATTGACTATGCCTCCAAGGTTTTCCGACGCACCCAATCCCCAAATGTGTATCTCTACACTGCTCTCATTGACGGGTTTGTGTCGTCTGGCTATTACCTTGATGGGATTCGTCTTTACTGTCAAATGGTGAATGAGTTTATATTTCCGGACAAATATGCCATCACTTCTGTGTTGAAAGCTTGTGGCTTTGGGTTGGCTTTGGAGGAAGGTAGAGAAGTCCATGCCCAGGCTTTGAAGCTTGGGTTGTCCTCGAATAGATCAATAAGGATGAAGCTGATGGGTCTTTATGGGAAGTGCGGTGAATTTGAAAGTGCACTCCAGGTGTTTGATGAAATGCCTGAAGGAGATGCAGTTGCGGCAGCCGTCATGATAACTTGTTATGCTGAGTATGGACTAGTTGAGGAGGCGAGTAGTGTTTTTAATCGGCTCAGGGAAAAGGATACGGTTTGCTGGACCGCGATGATTGATGGGTTGGTTAAGAATGGGGAGATGAATAGGGCTTTGGAGGTGTTTAGGGAGATGCAGGGGAGGAATGTGAGGCCTAATGAAGTTACATTGGTTTGTGTTCTATCTGCTTGTTCGCATTTGGGAGCTTTGGAGCTCGGACGATGGGTTTGCTCGTATATAGATAAGAATAACATTGAATGCAATTACATTGTGGGTGGTGCTCTGATTAATATGTATTCAAGGTGTGGTGATATTGATGGGGCAGTAGAAGTGTTTAGCAGGATGAGAGAGAGAGATGTCAGTACCTATAATTCCATGATTGAGGGGCTTGCTATGCATGGGAAGAGCACCATGGCTATTGAAATGTTCCGGGAAATGATGAAACGAGGACTAAAACCAAATAGCATTACTTTTGTTAAAGAATTAAATGCATGTAGCCATGGGGGTTTGGTGGAGTTGGGGTTTGAGATATTTCATTCCATGACTAATAGTCACGGCATTCAACCGCAAATAGAACACTATGGATGCATGGTTGATCTTCTAGCTCGTTCAGGACGGATTGAAGAGGCGTATAGTTTCATTGAAAGGATGAAAATGGCACCAGATCATATCATGTTGGGGGCTTTGCTAAGTGCTTGTAAAATCCATGGAAACCTTGAATTAGGAGAAAGGGTAGCTGAAATGTTGGTAAACTGTGATGATGCAGATTCAGGGACTTATGTTTTGCTGTCAAATGTGTATGCTGCATCAGGGAGGTGGAAAGAGGCTGCACAAGTGAGAGCTTTGACAAAGGAAGCTGGAACTCCAAAGGAGCCTGGTTGTAGTTTGATTGAAGTGAACAATGAGATCCATGAGTTCCTTTTGGGAGACATTAGACACCCACACAAAGAAAATATCTACAGAAAGTTAGAGGAGCTAAACCCTGTGTTAAAAAGGGCAGGATACTCGCCGGCAACAGAGGTAGTTTTGCATGATATTGGGGAAAGGCAAAAGGAATGGGCTCTAGCAATACATAGTGAGAGGCTTGCCATATGCTACGGACTAATCTCCACTAAACCGTGTACCACTTTAAGGATTGTGAAAAATTTGAGGGTTTGCAATGACTGCCACTCAATGATCAAGTTGATAGCTAAGATTACTAAGAGAAAGATAATAATGAGGGATCGCCATAGGTTCCATCATTTCGAGAATGGAGCTTGTTCTTGTGGTGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

923

Amino Acids

103.07

Weight (kDa)

8.09

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YIF1	PF03878	47 - 246	2.1e-49	YIF1
PPR_2	PF13041	381 - 428	8e-07	PPR repeat family
PPR_2	PF13041	513 - 561	2.4e-13	PPR repeat family
PPR_1	PF12854	514 - 542	3.4e-06	PPR repeat
PPR	PF01535	516 - 546	2.5e-08	PPR repeat
PPR_2	PF13041	614 - 661	3e-12	PPR repeat family
PPR_3	PF13812	615 - 661	3.9e-06	Pentatricopeptide repeat domain
PPR	PF01535	617 - 647	1.7e-07	PPR repeat
E_motif	PF20431	732 - 794	1.9e-18	E motif
DYW_deaminase	PF14432	830 - 922	2.7e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1058
Acc16I	TGCGCA	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	547, 2146
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	1559
AccIII	TCCGGA	1 cut(s)	1246
AciI	CCGC	7 cut(s)	537, 870, 923, 1398, 1457, 1557, 2054
AclWI	GGATC	5 cut(s)	169, 203, 216, 2389, 2718
AcoI	YGGCCR	2 cut(s)	867, 1039
AcsI	RAATTY	6 cut(s)	153, 440, 928, 949, 1403, 2632
AcuI	CTGAAG	2 cut(s)	278, 1461
AfaI	GTAC	4 cut(s)	374, 638, 1852, 2611
AfiI	CCNNNNNNNGG	7 cut(s)	59, 320, 462, 720, 960, 1327, 2619
AhdI	GACNNNNNGTC	1 cut(s)	2037
AhlI	ACTAGT	1 cut(s)	1495
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	5 cut(s)	299, 1041, 1326, 1419, 2362
AjuI	GAANNNNNNNTTGG	2 cut(s)	1586, 1618
AleI	CACNNNNGTG	1 cut(s)	1268
Alw21I	GWGCWC	6 cut(s)	671, 1074, 1417, 1704, 1771, 1898
Alw26I	GTCTC	2 cut(s)	1085, 2409
Alw44I	GTGCAC	1 cut(s)	1413
AlwI	GGATC	5 cut(s)	169, 203, 216, 2389, 2718
Aor13HI	TCCGGA	1 cut(s)	1246
AoxI	GGCC	4 cut(s)	427, 867, 1039, 1640
ApaLI	GTGCAC	1 cut(s)	1413
ApeKI	GCWGC	3 cut(s)	1460, 2291, 2315
ApoI	RAATTY	6 cut(s)	153, 440, 928, 949, 1403, 2632
ArsI	GACNNNNNNTTYG	4 cut(s)	1698, 1730, 2254, 2286
AseI	ATTAAT	2 cut(s)	348, 1776
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	297, 1045, 1554
AsuC2I	CCSGG	2 cut(s)	60, 1919
AsuHPI	GGTGA	5 cut(s)	727, 1240, 1412, 1808, 2768
AvaII	GGWCC	3 cut(s)	297, 1045, 1554
BaeGI	GKGCMC	1 cut(s)	1417
BalI	TGGCCA	1 cut(s)	1041
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	547, 2146
BanII	GRGCYC	3 cut(s)	1074, 1704, 2551
BbsI	GAAGAC	1 cut(s)	1057
Bbv12I	GWGCWC	6 cut(s)	671, 1074, 1417, 1704, 1771, 1898
BbvI	GCAGC	3 cut(s)	1472, 2278, 2302
BccI	CCATC	9 cut(s)	82, 746, 1196, 1268, 1372, 1562, 1704, 1799, 2733
BceAI	ACGGC	2 cut(s)	1448, 2059
BcgI	CGANNNNNNTGC	4 cut(s)	1698, 1732, 2475, 2509
BciT130I	CCWGG	5 cut(s)	301, 1043, 1328, 1421, 2364
BciVI	GTATCC	2 cut(s)	1534, 2483
BclI	TGATCA	1 cut(s)	2664
BcnI	CCSGG	2 cut(s)	60, 1919
BcoDI	GTCTC	2 cut(s)	1085, 2409
BcuI	ACTAGT	1 cut(s)	1495
BfaI	CTAG	7 cut(s)	32, 533, 720, 797, 1496, 2090, 2552
BfmI	CTRYAG	2 cut(s)	903, 2446
BfuI	GTATCC	2 cut(s)	1534, 2483
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	5 cut(s)	870, 1458, 1461, 2292, 2316
BlsI	GCNGC	5 cut(s)	871, 1459, 1462, 2293, 2317
Bme1390I	CCNGG	7 cut(s)	60, 301, 1043, 1328, 1421, 1919, 2364
Bme18I	GGWCC	3 cut(s)	297, 1045, 1554
BmeRI	GACNNNNNGTC	1 cut(s)	2037
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	3 cut(s)	297, 1045, 1554
BmiI	GGNNCC	5 cut(s)	210, 549, 2148, 2361, 2723
BmrFI	CCNGG	7 cut(s)	60, 301, 1043, 1328, 1421, 1919, 2364
BmsI	GCATC	8 cut(s)	426, 527, 684, 1438, 1611, 2063, 2239, 2303
BpiI	GAAGAC	1 cut(s)	1057
BpmI	CTGGAG	3 cut(s)	66, 348, 1403
Bpu10I	CCTNAGC	2 cut(s)	670, 1529
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	2 cut(s)	60, 1919
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	8 cut(s)	714, 809, 894, 1116, 1326, 1899, 1987, 2194
BsaWI	WCCGGW	2 cut(s)	960, 1246
Bsc4I	CCNNNNNNNGG	7 cut(s)	59, 320, 462, 720, 960, 1327, 2619
Bse118I	RCCGGY	1 cut(s)	2497
Bse1I	ACTGG	3 cut(s)	40, 299, 2768
Bse3DI	GCAATG	3 cut(s)	510, 765, 2653
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	1246
BseBI	CCWGG	5 cut(s)	301, 1043, 1328, 1421, 2364
BseDI	CCNNGG	8 cut(s)	714, 809, 894, 1116, 1326, 1899, 1987, 2194
BseGI	GGATG	7 cut(s)	28, 659, 738, 1374, 1836, 2078, 2142
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	7 cut(s)	59, 320, 462, 720, 960, 1327, 2619
BseMI	GCAATG	3 cut(s)	510, 765, 2653
BseMII	CTCAG	5 cut(s)	684, 785, 927, 1476, 1543
BseNI	ACTGG	3 cut(s)	40, 299, 2768
BseRI	GAGGAG	2 cut(s)	1517, 2474
BseSI	GKGCMC	1 cut(s)	1417
BseXI	GCAGC	3 cut(s)	1472, 2278, 2302
BseYI	CCCAGC	2 cut(s)	107, 575
BsgI	GTGCAG	1 cut(s)	2301
Bsh1236I	CGCG	1 cut(s)	1559
BshFI	GGCC	4 cut(s)	429, 869, 1041, 1642
BshNI	GGYRCC	2 cut(s)	547, 2146
BsiHKAI	GWGCWC	6 cut(s)	671, 1074, 1417, 1704, 1771, 1898
BsiSI	CCGG	5 cut(s)	59, 961, 1247, 1918, 2498
BslFI	GGGAC	5 cut(s)	18, 75, 129, 303, 2275
BslI	CCNNNNNNNGG	7 cut(s)	59, 320, 462, 720, 960, 1327, 2619
BsmAI	GTCTC	2 cut(s)	1085, 2409
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	5 cut(s)	18, 75, 129, 303, 2275
BsmI	GAATGC	3 cut(s)	238, 1751, 2046
BsnI	GGCC	4 cut(s)	429, 869, 1041, 1642
Bsp1286I	GDGCHC	7 cut(s)	671, 1074, 1417, 1704, 1771, 1898, 2551
Bsp13I	TCCGGA	1 cut(s)	1246
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
Bsp19I	CCATGG	3 cut(s)	1899, 1987, 2194
BspACI	CCGC	7 cut(s)	537, 870, 923, 1398, 1457, 1557, 2054
BspANI	GGCC	4 cut(s)	429, 869, 1041, 1642
BspCNI	CTCAG	5 cut(s)	683, 784, 926, 1477, 1542
BspEI	TCCGGA	1 cut(s)	1246
BspFNI	CGCG	1 cut(s)	1559
BspHI	TCATGA	2 cut(s)	384, 1467
BspLI	GGNNCC	5 cut(s)	210, 549, 2148, 2361, 2723
BspPI	GGATC	5 cut(s)	169, 203, 216, 2389, 2718
BspQI	GCTCTTC	1 cut(s)	1886
BspT107I	GGYRCC	2 cut(s)	547, 2146
BsrDI	GCAATG	3 cut(s)	510, 765, 2653
BsrFI	RCCGGY	1 cut(s)	2497
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	40, 299, 2768
BssAI	RCCGGY	1 cut(s)	2497
BssECI	CCNNGG	8 cut(s)	714, 809, 894, 1116, 1326, 1899, 1987, 2194
BssMI	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
BssNAI	GTATAC	1 cut(s)	582
BssT1I	CCWWGG	5 cut(s)	809, 1116, 1899, 1987, 2194
Bst1107I	GTATAC	1 cut(s)	582
Bst2UI	CCWGG	5 cut(s)	301, 1043, 1328, 1421, 2364
Bst4CI	ACNGT	6 cut(s)	174, 898, 1220, 1546, 2243, 2607
Bst6I	CTCTTC	4 cut(s)	143, 860, 1886, 2106
BstAPI	GCANNNNNTGC	1 cut(s)	2652
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	7 cut(s)	326, 415, 487, 790, 1878, 2499, 2574
BstDEI	CTNAG	9 cut(s)	670, 687, 771, 913, 1485, 1529, 2177, 2679, 2688
BstDSI	CCRYGG	4 cut(s)	894, 1899, 1987, 2194
BstF5I	GGATG	7 cut(s)	28, 659, 738, 1374, 1836, 2078, 2142
BstFNI	CGCG	1 cut(s)	1559
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	9 cut(s)	164, 211, 802, 1361, 2086, 2155, 2397, 2667, 2713
BstMAI	GTCTC	2 cut(s)	1085, 2409
BstMBI	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
BstMWI	GCNNNNNNNGC	3 cut(s)	1457, 1882, 2652
BstNI	CCWGG	5 cut(s)	301, 1043, 1328, 1421, 2364
BstNSI	RCATGY	2 cut(s)	1022, 1983
BstSCI	CCNGG	7 cut(s)	58, 299, 1041, 1326, 1419, 1917, 2362
BstSFI	CTRYAG	2 cut(s)	903, 2446
BstSLI	GKGCMC	1 cut(s)	1417
BstUI	CGCG	1 cut(s)	1559
BstV1I	GCAGC	3 cut(s)	1472, 2278, 2302
BstV2I	GAAGAC	1 cut(s)	1057
BstX2I	RGATCY	3 cut(s)	208, 799, 2394
BstYI	RGATCY	3 cut(s)	208, 799, 2394
BstZ17I	GTATAC	1 cut(s)	582
BsuI	GTATCC	2 cut(s)	1534, 2483
BsuRI	GGCC	4 cut(s)	429, 869, 1041, 1642
BtgI	CCRYGG	4 cut(s)	894, 1899, 1987, 2194
BtgZI	GCGATG	1 cut(s)	1574
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	7 cut(s)	28, 659, 738, 1374, 1836, 2078, 2142
BtsI	GCAGTG	1 cut(s)	1158
BtsIMutI	CAGTG	2 cut(s)	292, 1158
Cac8I	GCNNGC	7 cut(s)	326, 415, 487, 790, 1878, 2499, 2574
CciI	TCATGA	2 cut(s)	384, 1467
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	2497
Cfr13I	GGNCC	3 cut(s)	297, 1045, 1554
CseI	GACGC	1 cut(s)	1137
Csp6I	GTAC	4 cut(s)	373, 637, 1851, 2610
CspCI	CAANNNNNGTGG	2 cut(s)	879, 914
CviQI	GTAC	4 cut(s)	373, 637, 1851, 2610
DdeI	CTNAG	9 cut(s)	670, 687, 771, 913, 1485, 1529, 2177, 2679, 2688
DpnI	GATC	9 cut(s)	163, 210, 801, 1360, 2085, 2154, 2396, 2666, 2712
DpnII	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
DrdI	GACNNNNNNGTC	1 cut(s)	1058
DriI	GACNNNNNGTC	1 cut(s)	2037
DseDI	GACNNNNNNGTC	1 cut(s)	1058
EaeI	YGGCCR	2 cut(s)	867, 1039
Eam1104I	CTCTTC	4 cut(s)	143, 860, 1886, 2106
Eam1105I	GACNNNNNGTC	1 cut(s)	2037
EarI	CTCTTC	4 cut(s)	143, 860, 1886, 2106
Ecl136II	GAGCTC	2 cut(s)	1072, 1702
Eco130I	CCWWGG	5 cut(s)	809, 1116, 1899, 1987, 2194
Eco147I	AGGCCT	1 cut(s)	1642
Eco24I	GRGCYC	3 cut(s)	1074, 1704, 2551
Eco47I	GGWCC	3 cut(s)	297, 1045, 1554
Eco53kI	GAGCTC	2 cut(s)	1072, 1702
Eco57I	CTGAAG	2 cut(s)	278, 1461
EcoICRI	GAGCTC	2 cut(s)	1072, 1702
EcoRII	CCWGG	5 cut(s)	299, 1041, 1326, 1419, 2362
EcoT14I	CCWWGG	5 cut(s)	809, 1116, 1899, 1987, 2194
EcoT22I	ATGCAT	4 cut(s)	97, 1887, 1981, 2078
EcoT38I	GRGCYC	3 cut(s)	1074, 1704, 2551
ErhI	CCWWGG	5 cut(s)	809, 1116, 1899, 1987, 2194
Esp3I	CGTCTC	1 cut(s)	1085
FaqI	GGGAC	5 cut(s)	18, 75, 129, 303, 2275
FauI	CCCGC	1 cut(s)	930
FauNDI	CATATG	3 cut(s)	571, 653, 2579
FbaI	TGATCA	1 cut(s)	2664
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	5 cut(s)	870, 1458, 1461, 2292, 2316
FokI	GGATG	7 cut(s)	35, 646, 725, 1381, 1843, 2085, 2149
FriOI	GRGCYC	3 cut(s)	1074, 1704, 2551
Fsp4HI	GCNGC	5 cut(s)	870, 1458, 1461, 2292, 2316
FspAI	RTGCGCAY	1 cut(s)	237
FspBI	CTAG	7 cut(s)	32, 533, 720, 797, 1496, 2090, 2552
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	5 cut(s)	870, 1458, 1461, 2292, 2316
GsaI	CCCAGC	2 cut(s)	111, 579
GsuI	CTGGAG	3 cut(s)	66, 348, 1403
HaeIII	GGCC	4 cut(s)	429, 869, 1041, 1642
HapII	CCGG	5 cut(s)	59, 961, 1247, 1918, 2498
HgaI	GACGC	1 cut(s)	1137
HhaI	GCGC	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	2 cut(s)	1278, 1337
HinfI	GANTC	6 cut(s)	28, 36, 67, 117, 1207, 2255
HpaII	CCGG	5 cut(s)	59, 961, 1247, 1918, 2498
HphI	GGTGA	5 cut(s)	727, 1240, 1412, 1808, 2768
Hpy166II	GTNNAC	6 cut(s)	170, 582, 1415, 2239, 2386, 2610
Hpy188I	TCNGA	5 cut(s)	208, 774, 1127, 1706, 1773
Hpy8I	GTNNAC	6 cut(s)	170, 582, 1415, 2239, 2386, 2610
Hpy99I	CGWCG	2 cut(s)	1064, 1131
HpyAV	CCTTC	4 cut(s)	508, 1085, 1301, 1436
HpyCH4III	ACNGT	6 cut(s)	174, 898, 1220, 1546, 2243, 2607
HpyCH4IV	ACGT	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1457, 1882, 2652
HpyF3I	CTNAG	9 cut(s)	670, 687, 771, 913, 1485, 1529, 2177, 2679, 2688
HpySE526I	ACGT	1 cut(s)	828
HspAI	GCGC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	1246
KroI	GCCGGC	1 cut(s)	2497
KroNI	GCCGGC	1 cut(s)	2499
Ksp22I	TGATCA	1 cut(s)	2664
Kzo9I	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
LguI	GCTCTTC	1 cut(s)	1886
LmnI	GCTCC	9 cut(s)	104, 367, 1077, 1091, 1691, 1699, 2359, 2461, 2741
Lsp1109I	GCAGC	3 cut(s)	1472, 2278, 2302
LweI	GCATC	8 cut(s)	426, 527, 684, 1438, 1611, 2063, 2239, 2303
MaeI	CTAG	7 cut(s)	32, 533, 720, 797, 1496, 2090, 2552
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	4 cut(s)	725, 733, 1651, 2039
MalI	GATC	9 cut(s)	163, 210, 801, 1360, 2085, 2154, 2396, 2666, 2712
MboI	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	3 cut(s)	208, 799, 2394
MhlI	GDGCHC	7 cut(s)	671, 1074, 1417, 1704, 1771, 1898, 2551
MlsI	TGGCCA	1 cut(s)	1041
MluNI	TGGCCA	1 cut(s)	1041
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	3 cut(s)	537, 1113, 1150
Mox20I	TGGCCA	1 cut(s)	1041
Mph1103I	ATGCAT	4 cut(s)	97, 1887, 1981, 2078
MroI	TCCGGA	1 cut(s)	1246
MroNI	GCCGGC	1 cut(s)	2497
MscI	TGGCCA	1 cut(s)	1041
MslI	CAYNNNNRTG	3 cut(s)	664, 831, 1268
Msp20I	TGGCCA	1 cut(s)	1041
MspI	CCGG	5 cut(s)	59, 961, 1247, 1918, 2498
MspR9I	CCNGG	7 cut(s)	60, 301, 1043, 1328, 1421, 1919, 2364
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	3 cut(s)	238, 1751, 2046
MvaI	CCWGG	5 cut(s)	301, 1043, 1328, 1421, 2364
MvnI	CGCG	1 cut(s)	1559
MwoI	GCNNNNNNNGC	3 cut(s)	1457, 1882, 2652
NaeI	GCCGGC	1 cut(s)	2499
NciI	CCSGG	2 cut(s)	60, 1919
NcoI	CCATGG	3 cut(s)	1899, 1987, 2194
NdeI	CATATG	3 cut(s)	571, 653, 2579
NdeII	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
NgoMIV	GCCGGC	1 cut(s)	2497
NlaIV	GGNNCC	5 cut(s)	210, 549, 2148, 2361, 2723
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	733, 2039
NsbI	TGCGCA	1 cut(s)	237
NsiI	ATGCAT	4 cut(s)	97, 1887, 1981, 2078
NspI	RCATGY	2 cut(s)	1022, 1983
OliI	CACNNNNGTG	1 cut(s)	1268
PagI	TCATGA	2 cut(s)	384, 1467
PceI	AGGCCT	1 cut(s)	1642
PciSI	GCTCTTC	1 cut(s)	1886
PcsI	WCGNNNNNNNCGW	1 cut(s)	1065
PctI	GAATGC	3 cut(s)	238, 1751, 2046
PdiI	GCCGGC	1 cut(s)	2499
PfeI	GAWTC	5 cut(s)	28, 36, 67, 1207, 2255
PfoI	TCCNGGA	1 cut(s)	1917
PkrI	GCNGC	5 cut(s)	871, 1459, 1462, 2293, 2317
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PshBI	ATTAAT	2 cut(s)	348, 1776
Psp124BI	GAGCTC	2 cut(s)	1074, 1704
Psp6I	CCWGG	5 cut(s)	299, 1041, 1326, 1419, 2362
PspFI	CCCAGC	2 cut(s)	107, 575
PspGI	CCWGG	5 cut(s)	299, 1041, 1326, 1419, 2362
PspN4I	GGNNCC	5 cut(s)	210, 549, 2148, 2361, 2723
PspPI	GGNCC	3 cut(s)	297, 1045, 1554
PsuI	RGATCY	3 cut(s)	208, 799, 2394
RsaI	GTAC	4 cut(s)	374, 638, 1852, 2611
RsaNI	GTAC	4 cut(s)	373, 637, 1851, 2610
RseI	CAYNNNNRTG	3 cut(s)	664, 831, 1268
SacI	GAGCTC	2 cut(s)	1074, 1704
SapI	GCTCTTC	1 cut(s)	1886
SatI	GCNGC	5 cut(s)	870, 1458, 1461, 2292, 2316
Sau3AI	GATC	9 cut(s)	161, 208, 799, 1358, 2083, 2152, 2394, 2664, 2710
Sau96I	GGNCC	3 cut(s)	297, 1045, 1554
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	7 cut(s)	60, 301, 1043, 1328, 1421, 1919, 2364
SduI	GDGCHC	7 cut(s)	671, 1074, 1417, 1704, 1771, 1898, 2551
SfaNI	GCATC	8 cut(s)	426, 527, 684, 1438, 1611, 2063, 2239, 2303
SfcI	CTRYAG	2 cut(s)	903, 2446
SinI	GGWCC	3 cut(s)	297, 1045, 1554
SmiMI	CAYNNNNRTG	3 cut(s)	664, 831, 1268
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
SpeI	ACTAGT	1 cut(s)	1495
SseBI	AGGCCT	1 cut(s)	1642
SsiI	CCGC	7 cut(s)	537, 870, 923, 1398, 1457, 1557, 2054
SspMI	CTAG	7 cut(s)	32, 533, 720, 797, 1496, 2090, 2552
SstI	GAGCTC	2 cut(s)	1074, 1704
StuI	AGGCCT	1 cut(s)	1642
StyD4I	CCNGG	7 cut(s)	58, 299, 1041, 1326, 1419, 1917, 2362
StyI	CCWWGG	5 cut(s)	809, 1116, 1899, 1987, 2194
TaaI	ACNGT	6 cut(s)	174, 898, 1220, 1546, 2243, 2607
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	4 cut(s)	124, 1068, 1352, 2733
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	872, 1460
TfiI	GAWTC	5 cut(s)	28, 36, 67, 1207, 2255
TscAI	CASTG	2 cut(s)	299, 1165
TseFI	GTSAC	2 cut(s)	733, 2039
TseI	GCWGC	3 cut(s)	1460, 2291, 2315
Tsp45I	GTSAC	2 cut(s)	733, 2039
TspDTI	ATGAA	9 cut(s)	373, 1385, 1446, 1607, 1662, 1943, 2012, 2116, 2153
TspGWI	ACGGA	3 cut(s)	35, 2119, 2601
TspRI	CASTG	2 cut(s)	299, 1165
VneI	GTGCAC	1 cut(s)	1413
VpaK11BI	GGWCC	3 cut(s)	297, 1045, 1554
VspI	ATTAAT	2 cut(s)	348, 1776
XapI	RAATTY	6 cut(s)	153, 440, 928, 949, 1403, 2632
XceI	RCATGY	2 cut(s)	1022, 1983
XmiI	GTMKAC	1 cut(s)	581
XspI	CTAG	7 cut(s)	32, 533, 720, 797, 1496, 2090, 2552
Zsp2I	ATGCAT	4 cut(s)	97, 1887, 1981, 2078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.