Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59200 |
| fragaria_vesca | FvH4_2g17580 |
| malus_domestica | MD10G1149200.v1.1 MD10G1149700.v1.1 |
| prunus_persica | Prupe.8G188000_v2.0.a1 |
| pyrus_communis | pycom10g12880 pycom10g12910 |
| rosa_chinensis | RchiOBHm_Chr6g0282521 |
| rosa_laevigata | RLG00000012888 |
| rosa_multiflora | Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029 |
| rosa_rugosa | Rorug06G0147100 Rorug06G0147200 |
| rosa_samantha | Rh6CG262700 Rh6DG254600 |
| rosa_wichuraiana | Rw6G022520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 981 |
| Acc36I | ACCTGC | 1 cut(s) | 535 |
| AccB1I | GGYRCC | 2 cut(s) | 1270, 1548 |
| AccI | GTMKAC | 2 cut(s) | 273, 1410 |
| AccII | CGCG | 1 cut(s) | 46 |
| AciI | CCGC | 4 cut(s) | 18, 44, 522, 1025 |
| AclWI | GGATC | 2 cut(s) | 1513, 1842 |
| AcsI | RAATTY | 6 cut(s) | 49, 55, 70, 527, 869, 1756 |
| AcuI | CTGAAG | 2 cut(s) | 585, 1629 |
| AfaI | GTAC | 2 cut(s) | 1616, 1735 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 283, 451, 1743 |
| AflIII | ACRYGT | 1 cut(s) | 118 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1161 |
| AjnI | CCWGG | 2 cut(s) | 450, 1486 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 230, 262, 710, 742 |
| AleI | CACNNNNGTG | 1 cut(s) | 392 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1377, 1409 |
| AluBI | AGCT | 9 cut(s) | 196, 404, 463, 499, 826, 1231, 1295, 1588, 1802 |
| AluI | AGCT | 9 cut(s) | 196, 404, 463, 499, 826, 1231, 1295, 1588, 1802 |
| Alw21I | GWGCWC | 2 cut(s) | 541, 895 |
| Alw26I | GTCTC | 1 cut(s) | 1533 |
| Alw44I | GTGCAC | 1 cut(s) | 537 |
| AlwI | GGATC | 2 cut(s) | 1513, 1842 |
| AoxI | GGCC | 4 cut(s) | 169, 285, 764, 1067 |
| ApaLI | GTGCAC | 1 cut(s) | 537 |
| ApeKI | GCWGC | 1 cut(s) | 1439 |
| ApoI | RAATTY | 6 cut(s) | 49, 55, 70, 527, 869, 1756 |
| AseI | ATTAAT | 1 cut(s) | 900 |
| AspS9I | GGNCC | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 5 cut(s) | 364, 379, 536, 932, 941 |
| AxyI | CCTNAGG | 1 cut(s) | 1544 |
| BaeGI | GKGCMC | 1 cut(s) | 541 |
| BanI | GGYRCC | 2 cut(s) | 1270, 1548 |
| BanII | GRGCYC | 1 cut(s) | 1675 |
| Bbv12I | GWGCWC | 2 cut(s) | 541, 895 |
| BbvI | GCAGC | 1 cut(s) | 1426 |
| BccI | CCATC | 5 cut(s) | 233, 290, 392, 686, 828 |
| BceAI | ACGGC | 3 cut(s) | 300, 557, 1183 |
| BciT130I | CCWGG | 2 cut(s) | 452, 1488 |
| BciVI | GTATCC | 1 cut(s) | 658 |
| BclI | TGATCA | 1 cut(s) | 1788 |
| BcoDI | GTCTC | 1 cut(s) | 1533 |
| BfaI | CTAG | 1 cut(s) | 1214 |
| BfuAI | ACCTGC | 1 cut(s) | 535 |
| BfuI | GTATCC | 1 cut(s) | 658 |
| BisI | GCNGC | 2 cut(s) | 1026, 1440 |
| BlsI | GCNGC | 2 cut(s) | 1027, 1441 |
| Bme1390I | CCNGG | 2 cut(s) | 452, 1488 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1161 |
| BmgT120I | GGNCC | 1 cut(s) | 286 |
| BmiI | GGNNCC | 3 cut(s) | 1272, 1485, 1550 |
| BmrFI | CCNGG | 2 cut(s) | 452, 1488 |
| BmsI | GCATC | 4 cut(s) | 316, 735, 945, 1187 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1064 |
| Bsa29I | ATCGAT | 2 cut(s) | 587, 690 |
| BsaI | GGTCTC | 1 cut(s) | 1533 |
| BsaJI | CCNNGG | 4 cut(s) | 166, 450, 1111, 1318 |
| BsaWI | WCCGGW | 2 cut(s) | 81, 1223 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 206, 236, 1329, 1359 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 283, 451, 1743 |
| Bse21I | CCTNAGG | 1 cut(s) | 1544 |
| Bse3DI | GCAATG | 4 cut(s) | 690, 1027, 1378, 1777 |
| BseBI | CCWGG | 2 cut(s) | 452, 1488 |
| BseCI | ATCGAT | 2 cut(s) | 587, 690 |
| BseDI | CCNNGG | 4 cut(s) | 166, 450, 1111, 1318 |
| BseGI | GGATG | 3 cut(s) | 498, 577, 1202 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 283, 451, 1743 |
| BseMI | GCAATG | 4 cut(s) | 690, 1027, 1378, 1777 |
| BseMII | CTCAG | 1 cut(s) | 1558 |
| BseRI | GAGGAG | 2 cut(s) | 443, 641 |
| BseSI | GKGCMC | 1 cut(s) | 541 |
| BseXI | GCAGC | 1 cut(s) | 1426 |
| BseYI | CCCAGC | 1 cut(s) | 826 |
| BsgI | GTGCAG | 1 cut(s) | 1425 |
| Bsh1236I | CGCG | 1 cut(s) | 46 |
| Bsh1285I | CGRYCG | 1 cut(s) | 18 |
| BshFI | GGCC | 4 cut(s) | 171, 287, 766, 1069 |
| BshNI | GGYRCC | 2 cut(s) | 1270, 1548 |
| BshVI | ATCGAT | 2 cut(s) | 587, 690 |
| BsiEI | CGRYCG | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 2 cut(s) | 541, 895 |
| BsiSI | CCGG | 3 cut(s) | 82, 371, 1224 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 283, 451, 1743 |
| BsmAI | GTCTC | 1 cut(s) | 1533 |
| BsmI | GAATGC | 1 cut(s) | 1170 |
| BsnI | GGCC | 4 cut(s) | 171, 287, 766, 1069 |
| Bso31I | GGTCTC | 1 cut(s) | 1533 |
| Bsp1286I | GDGCHC | 3 cut(s) | 541, 895, 1675 |
| Bsp143I | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| Bsp19I | CCATGG | 2 cut(s) | 1111, 1318 |
| BspACI | CCGC | 4 cut(s) | 18, 44, 522, 1025 |
| BspANI | GGCC | 4 cut(s) | 171, 287, 766, 1069 |
| BspCNI | CTCAG | 1 cut(s) | 1557 |
| BspDI | ATCGAT | 2 cut(s) | 587, 690 |
| BspFNI | CGCG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 3 cut(s) | 1272, 1485, 1550 |
| BspMI | ACCTGC | 1 cut(s) | 535 |
| BspPI | GGATC | 2 cut(s) | 1513, 1842 |
| BspQI | GCTCTTC | 1 cut(s) | 1010 |
| BspT107I | GGYRCC | 2 cut(s) | 1270, 1548 |
| BspTNI | GGTCTC | 1 cut(s) | 1533 |
| BsrDI | GCAATG | 4 cut(s) | 690, 1027, 1378, 1777 |
| BssECI | CCNNGG | 4 cut(s) | 166, 450, 1111, 1318 |
| BssMI | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| BssNAI | GTATAC | 1 cut(s) | 1411 |
| BssT1I | CCWWGG | 3 cut(s) | 166, 1111, 1318 |
| Bst1107I | GTATAC | 1 cut(s) | 1411 |
| Bst2UI | CCWGG | 2 cut(s) | 452, 1488 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 670, 810 |
| Bst6I | CTCTTC | 3 cut(s) | 1010, 1230, 1420 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1776 |
| BstC8I | GCNNGC | 3 cut(s) | 1002, 1623, 1698 |
| BstDEI | CTNAG | 4 cut(s) | 1064, 1301, 1544, 1803 |
| BstDSI | CCRYGG | 2 cut(s) | 1111, 1318 |
| BstF5I | GGATG | 3 cut(s) | 498, 577, 1202 |
| BstFNI | CGCG | 1 cut(s) | 46 |
| BstKTI | GATC | 8 cut(s) | 189, 485, 690, 1210, 1279, 1521, 1791, 1837 |
| BstMAI | GTCTC | 1 cut(s) | 1533 |
| BstMBI | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| BstMCI | CGRYCG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1006, 1776 |
| BstNI | CCWGG | 2 cut(s) | 452, 1488 |
| BstNSI | RCATGY | 2 cut(s) | 146, 1107 |
| BstSCI | CCNGG | 2 cut(s) | 450, 1486 |
| BstSLI | GKGCMC | 1 cut(s) | 541 |
| BstUI | CGCG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 1 cut(s) | 1426 |
| BstX2I | RGATCY | 1 cut(s) | 1518 |
| BstYI | RGATCY | 1 cut(s) | 1518 |
| BstZ17I | GTATAC | 1 cut(s) | 1411 |
| Bsu15I | ATCGAT | 2 cut(s) | 587, 690 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1544 |
| BsuI | GTATCC | 1 cut(s) | 658 |
| BsuRI | GGCC | 4 cut(s) | 171, 287, 766, 1069 |
| BsuTUI | ATCGAT | 2 cut(s) | 587, 690 |
| BtgI | CCRYGG | 2 cut(s) | 1111, 1318 |
| BtgZI | GCGATG | 1 cut(s) | 847 |
| BtsCI | GGATG | 3 cut(s) | 498, 577, 1202 |
| BveI | ACCTGC | 1 cut(s) | 535 |
| Cac8I | GCNNGC | 3 cut(s) | 1002, 1623, 1698 |
| Cfr13I | GGNCC | 1 cut(s) | 286 |
| ClaI | ATCGAT | 2 cut(s) | 587, 690 |
| Csp6I | GTAC | 2 cut(s) | 1615, 1734 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1614, 1649 |
| CviQI | GTAC | 2 cut(s) | 1615, 1734 |
| DdeI | CTNAG | 4 cut(s) | 1064, 1301, 1544, 1803 |
| DpnI | GATC | 8 cut(s) | 188, 484, 689, 1209, 1278, 1520, 1790, 1836 |
| DpnII | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1161 |
| Eam1104I | CTCTTC | 3 cut(s) | 1010, 1230, 1420 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1161 |
| EarI | CTCTTC | 3 cut(s) | 1010, 1230, 1420 |
| Eco130I | CCWWGG | 3 cut(s) | 166, 1111, 1318 |
| Eco147I | AGGCCT | 1 cut(s) | 766 |
| Eco24I | GRGCYC | 1 cut(s) | 1675 |
| Eco31I | GGTCTC | 1 cut(s) | 1533 |
| Eco57I | CTGAAG | 2 cut(s) | 585, 1629 |
| Eco81I | CCTNAGG | 1 cut(s) | 1544 |
| EcoRI | GAATTC | 2 cut(s) | 70, 869 |
| EcoRII | CCWGG | 2 cut(s) | 450, 1486 |
| EcoT14I | CCWWGG | 3 cut(s) | 166, 1111, 1318 |
| EcoT22I | ATGCAT | 3 cut(s) | 1011, 1105, 1202 |
| EcoT38I | GRGCYC | 1 cut(s) | 1675 |
| ErhI | CCWWGG | 3 cut(s) | 166, 1111, 1318 |
| FauI | CCCGC | 1 cut(s) | 51 |
| FauNDI | CATATG | 1 cut(s) | 1703 |
| FbaI | TGATCA | 1 cut(s) | 1788 |
| FblI | GTMKAC | 2 cut(s) | 273, 1410 |
| Fnu4HI | GCNGC | 2 cut(s) | 1026, 1440 |
| FokI | GGATG | 3 cut(s) | 505, 584, 1209 |
| FriOI | GRGCYC | 1 cut(s) | 1675 |
| Fsp4HI | GCNGC | 2 cut(s) | 1026, 1440 |
| FspBI | CTAG | 1 cut(s) | 1214 |
| GluI | GCNGC | 2 cut(s) | 1026, 1440 |
| GsaI | CCCAGC | 1 cut(s) | 830 |
| HaeIII | GGCC | 4 cut(s) | 171, 287, 766, 1069 |
| HapII | CCGG | 3 cut(s) | 82, 371, 1224 |
| HincII | GTYRAC | 1 cut(s) | 474 |
| HindII | GTYRAC | 1 cut(s) | 474 |
| HindIII | AAGCTT | 3 cut(s) | 402, 461, 497 |
| HinfI | GANTC | 3 cut(s) | 130, 1379, 1845 |
| HpaII | CCGG | 3 cut(s) | 82, 371, 1224 |
| HphI | GGTGA | 5 cut(s) | 364, 379, 536, 932, 941 |
| Hpy166II | GTNNAC | 7 cut(s) | 274, 474, 539, 806, 841, 1411, 1510 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 897, 1609 |
| Hpy188III | TCNNGA | 4 cut(s) | 60, 1042, 1328, 1383 |
| Hpy8I | GTNNAC | 7 cut(s) | 274, 474, 539, 806, 841, 1411, 1510 |
| HpyAV | CCTTC | 4 cut(s) | 560, 1456, 1541, 1604 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 670, 810 |
| HpyCH4IV | ACGT | 3 cut(s) | 120, 270, 535 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1006, 1776 |
| HpyF3I | CTNAG | 4 cut(s) | 1064, 1301, 1544, 1803 |
| HpySE526I | ACGT | 3 cut(s) | 120, 270, 535 |
| Ksp22I | TGATCA | 1 cut(s) | 1788 |
| Kzo9I | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| LguI | GCTCTTC | 1 cut(s) | 1010 |
| LmnI | GCTCC | 6 cut(s) | 215, 815, 823, 1226, 1292, 1483 |
| Lsp1109I | GCAGC | 1 cut(s) | 1426 |
| LweI | GCATC | 4 cut(s) | 316, 735, 945, 1187 |
| MaeI | CTAG | 1 cut(s) | 1214 |
| MaeII | ACGT | 3 cut(s) | 120, 270, 535 |
| MaeIII | GTNAC | 5 cut(s) | 22, 102, 317, 775, 1163 |
| MalI | GATC | 8 cut(s) | 188, 484, 689, 1209, 1278, 1520, 1790, 1836 |
| MboI | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| MboII | GAAGA | 7 cut(s) | 181, 191, 1027, 1202, 1247, 1407, 1574 |
| MflI | RGATCY | 1 cut(s) | 1518 |
| MhlI | GDGCHC | 3 cut(s) | 541, 895, 1675 |
| MmeI | TCCRAC | 4 cut(s) | 237, 656, 801, 1104 |
| Mph1103I | ATGCAT | 3 cut(s) | 1011, 1105, 1202 |
| MseI | TTAA | 7 cut(s) | 645, 900, 1089, 1097, 1580, 1679, 1760 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| MspI | CCGG | 3 cut(s) | 82, 371, 1224 |
| MspR9I | CCNGG | 2 cut(s) | 452, 1488 |
| Mva1269I | GAATGC | 1 cut(s) | 1170 |
| MvaI | CCWGG | 2 cut(s) | 452, 1488 |
| MvnI | CGCG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1006, 1776 |
| NcoI | CCATGG | 2 cut(s) | 1111, 1318 |
| NdeI | CATATG | 1 cut(s) | 1703 |
| NdeII | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| NlaIV | GGNNCC | 3 cut(s) | 1272, 1485, 1550 |
| NmuCI | GTSAC | 1 cut(s) | 1163 |
| NsiI | ATGCAT | 3 cut(s) | 1011, 1105, 1202 |
| NspI | RCATGY | 2 cut(s) | 146, 1107 |
| OliI | CACNNNNGTG | 1 cut(s) | 392 |
| PceI | AGGCCT | 1 cut(s) | 766 |
| PciSI | GCTCTTC | 1 cut(s) | 1010 |
| PctI | GAATGC | 1 cut(s) | 1170 |
| PfeI | GAWTC | 3 cut(s) | 130, 1379, 1845 |
| PkrI | GCNGC | 2 cut(s) | 1027, 1441 |
| PshBI | ATTAAT | 1 cut(s) | 900 |
| PsiI | TTATAA | 1 cut(s) | 981 |
| Psp6I | CCWGG | 2 cut(s) | 450, 1486 |
| PspFI | CCCAGC | 1 cut(s) | 826 |
| PspGI | CCWGG | 2 cut(s) | 450, 1486 |
| PspN4I | GGNNCC | 3 cut(s) | 1272, 1485, 1550 |
| PspPI | GGNCC | 1 cut(s) | 286 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 649, 681 |
| PsuI | RGATCY | 1 cut(s) | 1518 |
| RsaI | GTAC | 2 cut(s) | 1616, 1735 |
| RsaNI | GTAC | 2 cut(s) | 1615, 1734 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SapI | GCTCTTC | 1 cut(s) | 1010 |
| SaqAI | TTAA | 7 cut(s) | 645, 900, 1089, 1097, 1580, 1679, 1760 |
| SatI | GCNGC | 2 cut(s) | 1026, 1440 |
| Sau3AI | GATC | 8 cut(s) | 186, 482, 687, 1207, 1276, 1518, 1788, 1834 |
| Sau96I | GGNCC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 2 cut(s) | 452, 1488 |
| SduI | GDGCHC | 3 cut(s) | 541, 895, 1675 |
| SfaNI | GCATC | 4 cut(s) | 316, 735, 945, 1187 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| SseBI | AGGCCT | 1 cut(s) | 766 |
| SsiI | CCGC | 4 cut(s) | 18, 44, 522, 1025 |
| SspI | AATATT | 1 cut(s) | 39 |
| SspMI | CTAG | 1 cut(s) | 1214 |
| StuI | AGGCCT | 1 cut(s) | 766 |
| StyD4I | CCNGG | 2 cut(s) | 450, 1486 |
| StyI | CCWWGG | 3 cut(s) | 166, 1111, 1318 |
| TaaI | ACNGT | 3 cut(s) | 344, 670, 810 |
| TaiI | ACGT | 3 cut(s) | 123, 273, 538 |
| TaqI | TCGA | 7 cut(s) | 192, 228, 552, 587, 690, 911, 1329 |
| TauI | GCSGC | 1 cut(s) | 1028 |
| TfiI | GAWTC | 3 cut(s) | 130, 1379, 1845 |
| Tru1I | TTAA | 7 cut(s) | 645, 900, 1089, 1097, 1580, 1679, 1760 |
| Tru9I | TTAA | 7 cut(s) | 645, 900, 1089, 1097, 1580, 1679, 1760 |
| TseFI | GTSAC | 1 cut(s) | 1163 |
| TseI | GCWGC | 1 cut(s) | 1439 |
| Tsp45I | GTSAC | 1 cut(s) | 1163 |
| VneI | GTGCAC | 1 cut(s) | 537 |
| VspI | ATTAAT | 1 cut(s) | 900 |
| XapI | RAATTY | 6 cut(s) | 49, 55, 70, 527, 869, 1756 |
| XceI | RCATGY | 2 cut(s) | 146, 1107 |
| XmiI | GTMKAC | 2 cut(s) | 273, 1410 |
| XspI | CTAG | 1 cut(s) | 1214 |
| Zsp2I | ATGCAT | 3 cut(s) | 1011, 1105, 1202 |