Prupe.8G188000_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
18453351 .. 18455542
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G188000.1

Sequence Viewer

Length: 1893 bp
ATGAGTTTCTCAACGACCGCAGTTACAGGGAACTCAATATTCCCGCGAAATTCAAATTCAAGACCCAAGAATTCTCAAAACCGGAAAGAAGTCATCTCTCTGTTACAGAAATGCAAACACGTTTATCAGATTCAACCAATACATGCCAAAATCATAAGAAATGCCCAAGGCCAAGACCCATTTGTGATCTTCGAGCTTCTTCGTCTTTGCTCCAACCTCAACTCCATCGACTACGCCAACAAGATTTTCCAGCAAACCAAAACCCCAAACGTCTACCTCTACACGGCCCTCATTGATGGGTTTGTGTCGTCTGGTTGTTACCTTGATGCAATTCGCCTTTACTGTCAAATGGTGAATGAGTTTATTTTGCCGGATAACTATGCCATCACCTCTGTGTTGAAAGCTTGTGGCTTTGGGTTGGCTTTGGAGGAGGGCAGAGAAGTCCATGCCCAGGTTTTGAAGCTTGGGTTGTCAACGAATAGATCAGTAAGGATGAAGCTTACGGGTCTTTATGGGAAGTGCGGTGAATTTGAACGTGCACGGCAGGTTTTCGATGAAATGCCTGAAGGGGATGTCGTTGCTTCATCGATTATGATTACTTCTTATGTTGATTATGGATTGGTTGAGGAGGCAAATGGTGTTTTTAATCGGGTTAGAACAAAGGATACAGTTTGTTGGACTGCAATGATCGATGGGCTGGTTAGGAATGGAGAGATGAATAGGGCTTTGGAGGTGTTTAGGGAGATGCAGAGGAATAATGTGAGGCCTAATGAAGTTACCATTGTTTGTGTTCTATCTGCTTGTTCACAGTTGGGAGCGTTGGAGCTGGGGCGATGGGTTCACTCTTACATGGACAAGTATGGCATTGAATTCAATTACATTGTAGGTGGTGCTCTGATTAATATGTATTCGAGGTGTGGTGATATTGGTGAGGCAGTAGAAGTGTTTGGTAAGATGCAAGAGAGAGATGTCAGTAGTTATAATTCCATGATTGAGGGGCTTGCTATGCATGGGAAGAGCAATGCGGCAGTTGAAATGTTCTGGACAATGATAAAACAAGGGCTTAGGCCAAATAGCATTACTTTTGTTAAAGTATTAAATGCATGTAGCCATGGAGGTTTGTTGGAGTTTGGATTTGAGATATTTCATTCCATGACTACTCGTCACGGCATTCAACCACAGATAGAACACTATGGATGCATGGTTGATCTTCTAGGTCGCTCCGGTCAGCTTGAAGAGGCATATAGTTTCATTACAAAAATGAAAATGGCACCAGATCATATCATGTTGGGAGCTTTGCTAAGTGCTTGTAAAATCCATGGAAATCTCGAATTAGGAGAAAGGGTAGCCGAAATCTTGGTAAATTGTGGCAATGCTGATTCGGGAACTTATGTTCTGCTATCAAATGTATACTCTTCATCAGGTAGGTGGAAAGAGGCTGCACAAGTGAGAGCAGAGATGAAGGAAAGTGGAACTCCAAAGGAGCCTGGTTGTAGTTTGATTGAAGTGAACAATGAGATCCATGAGTTCCTTCTGGGAGACCTCAGGCACCCAAAAAAAGAAGAAATCTACAAAAAGTTAAAAGAGCTAAACGATGAACTAAAATCTGAAGGGTACTTGCCTGCAACAGAGGTGGTTTTGCATGACATTGAGGACAGGGAAAAGGAATGGGCTCTGTTAATACATAGTGAGAGGCTTGCCATATGCTACGGGCTAATCTCTACAAAACCATGTACCACTTTGAGGATTGTGAAAAATTTAAGGGTTTGCAATGACTGCCACTCAATGATCAAGTTGATAGCTAAGATTACCAAGAGAAAGATTGTTGTGAGGGATCGCAATAGATTCCACCATTTTGAGAACGGGGCTTGTTCTTGTGCTGATTATTGGTGA

Protein Analysis

631

Amino Acids

71.02

Weight (kDa)

7.22

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013120)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 2 cut(s) 1270, 1548
AccI GTMKAC 2 cut(s) 273, 1410
AccII CGCG 1 cut(s) 46
AciI CCGC 4 cut(s) 18, 44, 522, 1025
AclWI GGATC 2 cut(s) 1513, 1842
AcsI RAATTY 6 cut(s) 49, 55, 70, 527, 869, 1756
AcuI CTGAAG 2 cut(s) 585, 1629
AfaI GTAC 2 cut(s) 1616, 1735
AfiI CCNNNNNNNGG 3 cut(s) 283, 451, 1743
AflIII ACRYGT 1 cut(s) 118
AhdI GACNNNNNGTC 1 cut(s) 1161
AjnI CCWGG 2 cut(s) 450, 1486
AjuI GAANNNNNNNTTGG 4 cut(s) 230, 262, 710, 742
AleI CACNNNNGTG 1 cut(s) 392
AloI GAACNNNNNNTCC 2 cut(s) 1377, 1409
AluBI AGCT 9 cut(s) 196, 404, 463, 499, 826, 1231, 1295, 1588, 1802
AluI AGCT 9 cut(s) 196, 404, 463, 499, 826, 1231, 1295, 1588, 1802
Alw21I GWGCWC 2 cut(s) 541, 895
Alw26I GTCTC 1 cut(s) 1533
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 2 cut(s) 1513, 1842
AoxI GGCC 4 cut(s) 169, 285, 764, 1067
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 1 cut(s) 1439
ApoI RAATTY 6 cut(s) 49, 55, 70, 527, 869, 1756
AseI ATTAAT 1 cut(s) 900
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 5 cut(s) 364, 379, 536, 932, 941
AxyI CCTNAGG 1 cut(s) 1544
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 1270, 1548
BanII GRGCYC 1 cut(s) 1675
Bbv12I GWGCWC 2 cut(s) 541, 895
BbvI GCAGC 1 cut(s) 1426
BccI CCATC 5 cut(s) 233, 290, 392, 686, 828
BceAI ACGGC 3 cut(s) 300, 557, 1183
BciT130I CCWGG 2 cut(s) 452, 1488
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 1 cut(s) 1788
BcoDI GTCTC 1 cut(s) 1533
BfaI CTAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 535
BfuI GTATCC 1 cut(s) 658
BisI GCNGC 2 cut(s) 1026, 1440
BlsI GCNGC 2 cut(s) 1027, 1441
Bme1390I CCNGG 2 cut(s) 452, 1488
BmeRI GACNNNNNGTC 1 cut(s) 1161
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 3 cut(s) 1272, 1485, 1550
BmrFI CCNGG 2 cut(s) 452, 1488
BmsI GCATC 4 cut(s) 316, 735, 945, 1187
Bpu10I CCTNAGC 1 cut(s) 1064
Bsa29I ATCGAT 2 cut(s) 587, 690
BsaI GGTCTC 1 cut(s) 1533
BsaJI CCNNGG 4 cut(s) 166, 450, 1111, 1318
BsaWI WCCGGW 2 cut(s) 81, 1223
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 1329, 1359
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 451, 1743
Bse21I CCTNAGG 1 cut(s) 1544
Bse3DI GCAATG 4 cut(s) 690, 1027, 1378, 1777
BseBI CCWGG 2 cut(s) 452, 1488
BseCI ATCGAT 2 cut(s) 587, 690
BseDI CCNNGG 4 cut(s) 166, 450, 1111, 1318
BseGI GGATG 3 cut(s) 498, 577, 1202
BseLI CCNNNNNNNGG 3 cut(s) 283, 451, 1743
BseMI GCAATG 4 cut(s) 690, 1027, 1378, 1777
BseMII CTCAG 1 cut(s) 1558
BseRI GAGGAG 2 cut(s) 443, 641
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 1 cut(s) 1426
BseYI CCCAGC 1 cut(s) 826
BsgI GTGCAG 1 cut(s) 1425
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 4 cut(s) 171, 287, 766, 1069
BshNI GGYRCC 2 cut(s) 1270, 1548
BshVI ATCGAT 2 cut(s) 587, 690
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 2 cut(s) 541, 895
BsiSI CCGG 3 cut(s) 82, 371, 1224
BslI CCNNNNNNNGG 3 cut(s) 283, 451, 1743
BsmAI GTCTC 1 cut(s) 1533
BsmI GAATGC 1 cut(s) 1170
BsnI GGCC 4 cut(s) 171, 287, 766, 1069
Bso31I GGTCTC 1 cut(s) 1533
Bsp1286I GDGCHC 3 cut(s) 541, 895, 1675
Bsp143I GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
Bsp19I CCATGG 2 cut(s) 1111, 1318
BspACI CCGC 4 cut(s) 18, 44, 522, 1025
BspANI GGCC 4 cut(s) 171, 287, 766, 1069
BspCNI CTCAG 1 cut(s) 1557
BspDI ATCGAT 2 cut(s) 587, 690
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 1272, 1485, 1550
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 2 cut(s) 1513, 1842
BspQI GCTCTTC 1 cut(s) 1010
BspT107I GGYRCC 2 cut(s) 1270, 1548
BspTNI GGTCTC 1 cut(s) 1533
BsrDI GCAATG 4 cut(s) 690, 1027, 1378, 1777
BssECI CCNNGG 4 cut(s) 166, 450, 1111, 1318
BssMI GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
BssNAI GTATAC 1 cut(s) 1411
BssT1I CCWWGG 3 cut(s) 166, 1111, 1318
Bst1107I GTATAC 1 cut(s) 1411
Bst2UI CCWGG 2 cut(s) 452, 1488
Bst4CI ACNGT 3 cut(s) 344, 670, 810
Bst6I CTCTTC 3 cut(s) 1010, 1230, 1420
BstAPI GCANNNNNTGC 1 cut(s) 1776
BstC8I GCNNGC 3 cut(s) 1002, 1623, 1698
BstDEI CTNAG 4 cut(s) 1064, 1301, 1544, 1803
BstDSI CCRYGG 2 cut(s) 1111, 1318
BstF5I GGATG 3 cut(s) 498, 577, 1202
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 8 cut(s) 189, 485, 690, 1210, 1279, 1521, 1791, 1837
BstMAI GTCTC 1 cut(s) 1533
BstMBI GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 1006, 1776
BstNI CCWGG 2 cut(s) 452, 1488
BstNSI RCATGY 2 cut(s) 146, 1107
BstSCI CCNGG 2 cut(s) 450, 1486
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 1426
BstX2I RGATCY 1 cut(s) 1518
BstYI RGATCY 1 cut(s) 1518
BstZ17I GTATAC 1 cut(s) 1411
Bsu15I ATCGAT 2 cut(s) 587, 690
Bsu36I CCTNAGG 1 cut(s) 1544
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 4 cut(s) 171, 287, 766, 1069
BsuTUI ATCGAT 2 cut(s) 587, 690
BtgI CCRYGG 2 cut(s) 1111, 1318
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 3 cut(s) 498, 577, 1202
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 1002, 1623, 1698
Cfr13I GGNCC 1 cut(s) 286
ClaI ATCGAT 2 cut(s) 587, 690
Csp6I GTAC 2 cut(s) 1615, 1734
CspCI CAANNNNNGTGG 2 cut(s) 1614, 1649
CviQI GTAC 2 cut(s) 1615, 1734
DdeI CTNAG 4 cut(s) 1064, 1301, 1544, 1803
DpnI GATC 8 cut(s) 188, 484, 689, 1209, 1278, 1520, 1790, 1836
DpnII GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
DriI GACNNNNNGTC 1 cut(s) 1161
Eam1104I CTCTTC 3 cut(s) 1010, 1230, 1420
Eam1105I GACNNNNNGTC 1 cut(s) 1161
EarI CTCTTC 3 cut(s) 1010, 1230, 1420
Eco130I CCWWGG 3 cut(s) 166, 1111, 1318
Eco147I AGGCCT 1 cut(s) 766
Eco24I GRGCYC 1 cut(s) 1675
Eco31I GGTCTC 1 cut(s) 1533
Eco57I CTGAAG 2 cut(s) 585, 1629
Eco81I CCTNAGG 1 cut(s) 1544
EcoRI GAATTC 2 cut(s) 70, 869
EcoRII CCWGG 2 cut(s) 450, 1486
EcoT14I CCWWGG 3 cut(s) 166, 1111, 1318
EcoT22I ATGCAT 3 cut(s) 1011, 1105, 1202
EcoT38I GRGCYC 1 cut(s) 1675
ErhI CCWWGG 3 cut(s) 166, 1111, 1318
FauI CCCGC 1 cut(s) 51
FauNDI CATATG 1 cut(s) 1703
FbaI TGATCA 1 cut(s) 1788
FblI GTMKAC 2 cut(s) 273, 1410
Fnu4HI GCNGC 2 cut(s) 1026, 1440
FokI GGATG 3 cut(s) 505, 584, 1209
FriOI GRGCYC 1 cut(s) 1675
Fsp4HI GCNGC 2 cut(s) 1026, 1440
FspBI CTAG 1 cut(s) 1214
GluI GCNGC 2 cut(s) 1026, 1440
GsaI CCCAGC 1 cut(s) 830
HaeIII GGCC 4 cut(s) 171, 287, 766, 1069
HapII CCGG 3 cut(s) 82, 371, 1224
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HindIII AAGCTT 3 cut(s) 402, 461, 497
HinfI GANTC 3 cut(s) 130, 1379, 1845
HpaII CCGG 3 cut(s) 82, 371, 1224
HphI GGTGA 5 cut(s) 364, 379, 536, 932, 941
Hpy166II GTNNAC 7 cut(s) 274, 474, 539, 806, 841, 1411, 1510
Hpy188I TCNGA 3 cut(s) 129, 897, 1609
Hpy188III TCNNGA 4 cut(s) 60, 1042, 1328, 1383
Hpy8I GTNNAC 7 cut(s) 274, 474, 539, 806, 841, 1411, 1510
HpyAV CCTTC 4 cut(s) 560, 1456, 1541, 1604
HpyCH4III ACNGT 3 cut(s) 344, 670, 810
HpyCH4IV ACGT 3 cut(s) 120, 270, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 1006, 1776
HpyF3I CTNAG 4 cut(s) 1064, 1301, 1544, 1803
HpySE526I ACGT 3 cut(s) 120, 270, 535
Ksp22I TGATCA 1 cut(s) 1788
Kzo9I GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
LguI GCTCTTC 1 cut(s) 1010
LmnI GCTCC 6 cut(s) 215, 815, 823, 1226, 1292, 1483
Lsp1109I GCAGC 1 cut(s) 1426
LweI GCATC 4 cut(s) 316, 735, 945, 1187
MaeI CTAG 1 cut(s) 1214
MaeII ACGT 3 cut(s) 120, 270, 535
MaeIII GTNAC 5 cut(s) 22, 102, 317, 775, 1163
MalI GATC 8 cut(s) 188, 484, 689, 1209, 1278, 1520, 1790, 1836
MboI GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
MboII GAAGA 7 cut(s) 181, 191, 1027, 1202, 1247, 1407, 1574
MflI RGATCY 1 cut(s) 1518
MhlI GDGCHC 3 cut(s) 541, 895, 1675
MmeI TCCRAC 4 cut(s) 237, 656, 801, 1104
Mph1103I ATGCAT 3 cut(s) 1011, 1105, 1202
MseI TTAA 7 cut(s) 645, 900, 1089, 1097, 1580, 1679, 1760
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 3 cut(s) 82, 371, 1224
MspR9I CCNGG 2 cut(s) 452, 1488
Mva1269I GAATGC 1 cut(s) 1170
MvaI CCWGG 2 cut(s) 452, 1488
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 1006, 1776
NcoI CCATGG 2 cut(s) 1111, 1318
NdeI CATATG 1 cut(s) 1703
NdeII GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
NlaIV GGNNCC 3 cut(s) 1272, 1485, 1550
NmuCI GTSAC 1 cut(s) 1163
NsiI ATGCAT 3 cut(s) 1011, 1105, 1202
NspI RCATGY 2 cut(s) 146, 1107
OliI CACNNNNGTG 1 cut(s) 392
PceI AGGCCT 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 1010
PctI GAATGC 1 cut(s) 1170
PfeI GAWTC 3 cut(s) 130, 1379, 1845
PkrI GCNGC 2 cut(s) 1027, 1441
PshBI ATTAAT 1 cut(s) 900
PsiI TTATAA 1 cut(s) 981
Psp6I CCWGG 2 cut(s) 450, 1486
PspFI CCCAGC 1 cut(s) 826
PspGI CCWGG 2 cut(s) 450, 1486
PspN4I GGNNCC 3 cut(s) 1272, 1485, 1550
PspPI GGNCC 1 cut(s) 286
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PsuI RGATCY 1 cut(s) 1518
RsaI GTAC 2 cut(s) 1616, 1735
RsaNI GTAC 2 cut(s) 1615, 1734
RseI CAYNNNNRTG 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 1010
SaqAI TTAA 7 cut(s) 645, 900, 1089, 1097, 1580, 1679, 1760
SatI GCNGC 2 cut(s) 1026, 1440
Sau3AI GATC 8 cut(s) 186, 482, 687, 1207, 1276, 1518, 1788, 1834
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 452, 1488
SduI GDGCHC 3 cut(s) 541, 895, 1675
SfaNI GCATC 4 cut(s) 316, 735, 945, 1187
SmiMI CAYNNNNRTG 1 cut(s) 392
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 4 cut(s) 18, 44, 522, 1025
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 1214
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 2 cut(s) 450, 1486
StyI CCWWGG 3 cut(s) 166, 1111, 1318
TaaI ACNGT 3 cut(s) 344, 670, 810
TaiI ACGT 3 cut(s) 123, 273, 538
TaqI TCGA 7 cut(s) 192, 228, 552, 587, 690, 911, 1329
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 3 cut(s) 130, 1379, 1845
Tru1I TTAA 7 cut(s) 645, 900, 1089, 1097, 1580, 1679, 1760
Tru9I TTAA 7 cut(s) 645, 900, 1089, 1097, 1580, 1679, 1760
TseFI GTSAC 1 cut(s) 1163
TseI GCWGC 1 cut(s) 1439
Tsp45I GTSAC 1 cut(s) 1163
VneI GTGCAC 1 cut(s) 537
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 6 cut(s) 49, 55, 70, 527, 869, 1756
XceI RCATGY 2 cut(s) 146, 1107
XmiI GTMKAC 2 cut(s) 273, 1410
XspI CTAG 1 cut(s) 1214
Zsp2I ATGCAT 3 cut(s) 1011, 1105, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.