Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Reverse (-)

21018852 .. 21022283

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0147200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGCCAAAGTGCCAAGTTGGGCTAGACTCTCGGGTAGAACATATACTTGAAATGTTAGATGTTGGCGGAAGTGATGTACGCATGGTAGGAATATGGGGAATTGGCGGAATAGGGAAGACAACAATTGCTAAAGCTGTTCACAATACAATTGCCCATAAGTTTGATGGTAGCTGCTTTTTGGCAAATGTTAGAGAAGGTTCGGAGCAACATGGAGGTTTAGTCAACCTACAAAATATTCTTCTCTCTAGCATTGTGGGGCAGAAAGAATTGAAAATAAACAACATTCATGAAGGAATCACTTTGTTGCGTGAGAAGTTGAGATATCAAATGATTCTCTTAATTGTTGACGATGTGGATAATTTGGACCAGTTAGAGAAATTAGCTGGGGGAACTGATTGGTTTGGTCACGGCAGCAGAGTTATCATAACAACAAGAGATAAGTATTTGTTGATTGCACATCAAGTGAAACTAATATACAAGTTCAAATGCATTCAAGGATATAAGAATTTAGATGATAATGAGAAACTGTCAATTACTACTGTTGTTGAATATGCTCAAGGCATTCCACTTGCATTGGAAGTTTTAGGTTCATATCTATGTGATACCTCTATACATAAATGGCAAGCTATGTTAGATGGTTTTAAAAAAAATCCTCCTAGGCGCATTCAAGATATTCTCATAATCAGTTATGATAGACTGCAAGATACAGTGCAAAAAGTTTTCCTCGACATTGCTTGTTTCTTCAAAGGTTGGAATAAAAATGATGTGATACAAATACTTGAAGGTTGTGACCGCATTAACCCCGAGCATAGTATTAAAGTTCTCGAAGAAAAGGCTCTCATATATCTTGGTGTATATGGTCAAATTTGCATGCATGATTTGTTGGAAGAGATGGGGAAAGATAAAGTTTTGCAAGAGTCTACAGAGCCCGGTGAGCGAAGCAGACTGTGGCATCACAAGGATGTACAGAATGCTCTAACAGAAAACATGGGAACAAGTAAAATTGAAGGCATGATGGTAAAGATGCCCAAAGAATATGAGATACGCTTGAGTCCTAAATGCTTCAAAAAGATGAGAAATCTTAAAATTTTTATAAACGTCAATGGACGGTTTTGTGGAAAGGTTGATTATTATCCGAATCAGTTGCGGTTACTTGATTGGCCTGACTGTCCACTGAAATCTTTGCCCTCCAATTTTAATACGAAGAATCTAGTTCAACTTAGTATGTCTTGCAGCCGCATCTCACGTTTTGGAGAAGGATTCAAGAGTATGGAAAATCTGAAATCCTTAAAATTGGAGAAATGTAAATTCCTAGCAGCAAGCCCAGACCTGTCTGGAAGCCCAAACTTAGAGTTGCTGGATCTAAGTTTTTGTACAAGTTTAAAGAAGATTCACCCTTCGGTTGGATCCCTCAAAAAGCTTATTAGACTGGATCTGTGTGGGTGTAAAAGGTTAGAGGAGGTTCACCCTTCGGTTGGATCCCTCAAAAAGCTTGTTCACCTGGATCTTGAAGGATGCTCGAAACTTCGGATGCTACCCGGCGAAGTCAACTGGAGATCCCTCCAAACCATTAATCTTGACCATTGCAGAATGCTGGAGAGTTTTCCTGAAATTGTGGGAGAGATGAAATACATGACATTCTTGCGTCTATTCGGCACTGGCATCAAAGCATTGCCTTCATCCATTGGATATCTAATTAACCTTGAACGGTTGGTGTTATATAATTGTGGAAACCTCACAGATCTACCTTGCAGCATCTATGAATTGCAAAATCTGGTGGAGGTTCTTTTGAACGACTGCCCAAAACTCGTAAGATTCCCAAATAAGGGGGGCTCTGAAGTGCTTCCAACTTACTCAAAGGTTTCACATGACGAAGGATGCAGTTCAATGGAGCCGCACAATTTGGCACTATATCAATTCACCGCGAGAGGATGCGCCACTTTATCTAATACTGATTTCCTCGCATCCCTTGATTGGGCACGTGAAATTGATTTATCAGGAAGCGCCATTGTTATTCTTTCCGAATGCATCAACAAACTTGTCAAGTTGAGGAAACTCAATTTGAGCGGCTGCAGGAGGCTCGTAGAAATTCCAGAGCTTCCACCAAGCATTCGCCGCTTGGATGTGAGTGATTGCGTATCATTGGAAAGAATTTTGAAGTTGTCAAACATTTTGGAGCGTAAAGAATCACAAATGATTGAGCAGATGGACTTGACTAATTGCTGGAGACTCTGTCAAAATTTGGTTCAGATGGCAAACAAGGATGATGATGATGATGATGAGGTGGACGCTGATCTCTTCTTTCGACTCCTATCTTCTCAGCAATCCAAATTCACAATTAAATTTCCAGTTCCAAGAAGCGAGGTTCCAAAGTGGTTCAGCTGTCAAATGGATTTCATGGGGTATAGGCGGTTTGAATTTTGTATTGAAACACTTGCAAATTTCAAATGGGAGAACACAGGATTGGCTCTCTGTGTTGCTGTTGATCAAAACTTGCAAGATACTTCTACTGATTGCTATTTTGTGGTCAAGTGTATTCACATCAATGAAGTACGTGTTTCAAATTGGCCCCTCCAGGTGGTTAATTCAGCAGAGCCATATCATGTGTGGCTGCTCTATGTTCCCTTCCTTGAAATGTGGCGATTTGGTTATATGCGTCCATTGCCCCCTTTTACGTGTCGAGTCATTATTTATTCTTCTTTTGCATCGGATAACCCCTTCAAAAGCTGTGGGGTCCACCTTGTAATGCCACCCAATGAAGACGTTTGTATAAAGCTGATCCATGCAGAGAACCTCACCAGTGAACCTTCTGATTATGAACTTTATAATTATAAGGTATCGTTTCCTCATTTTAGAGATGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

955

Amino Acids

109.01

Weight (kDa)

6.56

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	10 - 150	2.3e-14	NB-ARC domain
WHD_ROQ1	PF23282	238 - 305	4.5e-11	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	511 - 602	6.1e-07	Leucine-rich repeat region
LRR_13	PF23286	520 - 717	2.3e-16	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1094, 2826, 2832
AccBSI	CCGCTC	1 cut(s)	2067
AccI	GTMKAC	1 cut(s)	920
AccII	CGCG	1 cut(s)	1925
AclWI	GGATC	9 cut(s)	1368, 1401, 1414, 1440, 1473, 1486, 1512, 1551, 2773
AcuI	CTGAAG	1 cut(s)	1857
AcvI	CACGTG	1 cut(s)	1982
AfaI	GTAC	4 cut(s)	78, 966, 1375, 2553
AfiI	CCNNNNNNNGG	7 cut(s)	1403, 1475, 1825, 1826, 1974, 1975, 2578
AflIII	ACRYGT	2 cut(s)	2554, 2675
AjnI	CCWGG	2 cut(s)	1500, 2574
AjuI	GAANNNNNNNTTGG	2 cut(s)	2447, 2479
Alw26I	GTCTC	1 cut(s)	2221
AlwI	GGATC	9 cut(s)	1368, 1401, 1414, 1440, 1473, 1486, 1512, 1551, 2773
Ama87I	CYCGRG	2 cut(s)	30, 803
AoxI	GGCC	2 cut(s)	1160, 2567
ApeKI	GCWGC	7 cut(s)	171, 411, 1233, 1316, 1752, 2070, 2611
AseI	ATTAAT	1 cut(s)	1572
Asp700I	GAANNNNTTC	1 cut(s)	1842
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	3 cut(s)	663, 1937, 2006
AspS9I	GGNCC	3 cut(s)	364, 2568, 2734
AsuC2I	CCSGG	2 cut(s)	930, 1539
AsuHPI	GGTGA	6 cut(s)	944, 1385, 1457, 1490, 1912, 2788
AvaI	CYCGRG	2 cut(s)	30, 803
AvaII	GGWCC	2 cut(s)	364, 2734
AvrII	CCTAGG	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	1981
BamHI	GGATCC	2 cut(s)	1406, 1478
BanII	GRGCYC	2 cut(s)	930, 1835
BbrPI	CACGTG	1 cut(s)	1982
BbsI	GAAGAC	2 cut(s)	122, 2766
BbvI	GCAGC	7 cut(s)	158, 423, 1245, 1328, 1764, 2057, 2598
BccI	CCATC	6 cut(s)	158, 629, 886, 1009, 2200, 2245
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	4 cut(s)	1126, 1160, 2062, 2096
BciT130I	CCWGG	2 cut(s)	1502, 2576
BclI	TGATCA	1 cut(s)	2485
BcnI	CCSGG	2 cut(s)	930, 1539
BcoDI	GTCTC	1 cut(s)	2221
BfaI	CTAG	5 cut(s)	23, 246, 657, 1211, 1313
BfmI	CTRYAG	2 cut(s)	921, 2071
BfoI	RGCGCY	1 cut(s)	2007
BglII	AGATCT	1 cut(s)	1741
BlnI	CCTAGG	1 cut(s)	656
Bme1390I	CCNGG	4 cut(s)	930, 1502, 1539, 2576
Bme18I	GGWCC	2 cut(s)	364, 2734
BmeT110I	CYCGRG	2 cut(s)	30, 803
BmgT120I	GGNCC	3 cut(s)	364, 2568, 2734
BmiI	GGNNCC	6 cut(s)	1408, 1480, 1893, 2367, 2570, 2735
BmrFI	CCNGG	4 cut(s)	930, 1502, 1539, 2576
BpiI	GAAGAC	2 cut(s)	122, 2766
BpmI	CTGGAG	4 cut(s)	1573, 1616, 2245, 2558
BpuEI	CTTGAG	2 cut(s)	540, 1069
BpuMI	CCSGG	2 cut(s)	930, 1539
BsaAI	YACGTR	3 cut(s)	1982, 2555, 2676
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaJI	CCNNGG	1 cut(s)	656
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 2218, 2248
Bsc4I	CCNNNNNNNGG	7 cut(s)	1403, 1475, 1825, 1826, 1974, 1975, 2578
Bse1I	ACTGG	6 cut(s)	367, 1434, 1556, 1663, 2348, 2799
Bse3DI	GCAATG	4 cut(s)	729, 1582, 1670, 2660
Bse8I	GATNNNNATC	1 cut(s)	1131
BseBI	CCWGG	2 cut(s)	1502, 2576
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	9 cut(s)	967, 1520, 1536, 1679, 1883, 1937, 1964, 2128, 2269
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	7 cut(s)	1403, 1475, 1825, 1826, 1974, 1975, 2578
BseMI	GCAATG	4 cut(s)	729, 1582, 1670, 2660
BseMII	CTCAG	1 cut(s)	2333
BseNI	ACTGG	6 cut(s)	367, 1434, 1556, 1663, 2348, 2799
BseRI	GAGGAG	1 cut(s)	1472
BseSI	GKGCMC	1 cut(s)	1981
BseXI	GCAGC	7 cut(s)	158, 423, 1245, 1328, 1764, 2057, 2598
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	1925
BshFI	GGCC	2 cut(s)	1162, 2569
BsiHKCI	CYCGRG	2 cut(s)	30, 803
BsiSI	CCGG	2 cut(s)	930, 1539
BslI	CCNNNNNNNGG	7 cut(s)	1403, 1475, 1825, 1826, 1974, 1975, 2578
BsmAI	GTCTC	1 cut(s)	2221
BsmI	GAATGC	7 cut(s)	489, 561, 663, 976, 1596, 2030, 2109
BsnI	GGCC	2 cut(s)	1162, 2569
BsoBI	CYCGRG	2 cut(s)	30, 803
Bsp1286I	GDGCHC	3 cut(s)	930, 1835, 1981
Bsp1407I	TGTACA	2 cut(s)	964, 1373
BspANI	GGCC	2 cut(s)	1162, 2569
BspCNI	CTCAG	1 cut(s)	2332
BspFNI	CGCG	1 cut(s)	1925
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	6 cut(s)	1408, 1480, 1893, 2367, 2570, 2735
BspMAI	CTGCAG	1 cut(s)	2075
BspPI	GGATC	9 cut(s)	1368, 1401, 1414, 1440, 1473, 1486, 1512, 1551, 2773
BsrBI	CCGCTC	1 cut(s)	2067
BsrDI	GCAATG	4 cut(s)	729, 1582, 1670, 2660
BsrGI	TGTACA	2 cut(s)	964, 1373
BsrI	ACTGG	6 cut(s)	367, 1434, 1556, 1663, 2348, 2799
BssECI	CCNNGG	1 cut(s)	656
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	1502, 2576
Bst4CI	ACNGT	7 cut(s)	528, 541, 709, 948, 1110, 1169, 1710
Bst6I	CTCTTC	2 cut(s)	882, 2303
BstAUI	TGTACA	2 cut(s)	964, 1373
BstBAI	YACGTR	3 cut(s)	1982, 2555, 2676
BstC8I	GCNNGC	3 cut(s)	624, 872, 1321
BstDEI	CTNAG	4 cut(s)	1220, 1348, 1364, 2319
BstF5I	GGATG	9 cut(s)	967, 1520, 1536, 1679, 1883, 1937, 1964, 2128, 2269
BstFNI	CGCG	1 cut(s)	1925
BstH2I	RGCGCY	1 cut(s)	2007
BstHHI	GCGC	3 cut(s)	663, 1937, 2006
BstMAI	GTCTC	1 cut(s)	2221
BstMWI	GCNNNNNNNGC	3 cut(s)	934, 2115, 2662
BstNI	CCWGG	2 cut(s)	1502, 2576
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	4 cut(s)	928, 1500, 1537, 2574
BstSFI	CTRYAG	2 cut(s)	921, 2071
BstSLI	GKGCMC	1 cut(s)	1981
BstUI	CGCG	1 cut(s)	1925
BstV1I	GCAGC	7 cut(s)	158, 423, 1245, 1328, 1764, 2057, 2598
BstV2I	GAAGAC	2 cut(s)	122, 2766
BstX2I	RGATCY	7 cut(s)	1360, 1406, 1432, 1478, 1504, 1556, 1741
BstYI	RGATCY	7 cut(s)	1360, 1406, 1432, 1478, 1504, 1556, 1741
BsuRI	GGCC	2 cut(s)	1162, 2569
BtsCI	GGATG	9 cut(s)	967, 1520, 1536, 1679, 1883, 1937, 1964, 2128, 2269
BtsIMutI	CAGTG	4 cut(s)	714, 1172, 1656, 2806
Cac8I	GCNNGC	3 cut(s)	624, 872, 1321
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	3 cut(s)	663, 1937, 2006
Cfr13I	GGNCC	3 cut(s)	364, 2568, 2734
CseI	GACGC	3 cut(s)	1634, 2297, 2645
Csp6I	GTAC	4 cut(s)	77, 965, 1374, 2552
CspCI	CAANNNNNGTGG	4 cut(s)	555, 590, 2710, 2745
CviQI	GTAC	4 cut(s)	77, 965, 1374, 2552
DdeI	CTNAG	4 cut(s)	1220, 1348, 1364, 2319
DraI	TTTAAA	2 cut(s)	643, 1383
Eam1104I	CTCTTC	2 cut(s)	882, 2303
EarI	CTCTTC	2 cut(s)	882, 2303
EciI	GGCGGA	2 cut(s)	81, 120
Eco130I	CCWWGG	1 cut(s)	656
Eco24I	GRGCYC	2 cut(s)	930, 1835
Eco32I	GATATC	2 cut(s)	323, 1691
Eco47I	GGWCC	2 cut(s)	364, 2734
Eco57I	CTGAAG	1 cut(s)	1857
Eco72I	CACGTG	1 cut(s)	1982
Eco88I	CYCGRG	2 cut(s)	30, 803
EcoRII	CCWGG	2 cut(s)	1500, 2574
EcoRV	GATATC	2 cut(s)	323, 1691
EcoT14I	CCWWGG	1 cut(s)	656
EcoT22I	ATGCAT	3 cut(s)	491, 876, 2030
EcoT38I	GRGCYC	2 cut(s)	930, 1835
ErhI	CCWWGG	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	2485
FblI	GTMKAC	1 cut(s)	920
FokI	GGATG	9 cut(s)	974, 1527, 1543, 1666, 1890, 1944, 1951, 2135, 2276
FriOI	GRGCYC	2 cut(s)	930, 1835
FspBI	CTAG	5 cut(s)	23, 246, 657, 1211, 1313
GlaI	GCGC	3 cut(s)	662, 1936, 2005
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	4 cut(s)	1573, 1616, 2245, 2558
HaeII	RGCGCY	1 cut(s)	2007
HaeIII	GGCC	2 cut(s)	1162, 2569
HapII	CCGG	2 cut(s)	930, 1539
HgaI	GACGC	3 cut(s)	1634, 2297, 2645
HhaI	GCGC	3 cut(s)	663, 1937, 2006
Hin6I	GCGC	3 cut(s)	661, 1935, 2004
HinP1I	GCGC	3 cut(s)	661, 1935, 2004
HincII	GTYRAC	3 cut(s)	223, 346, 1549
HindII	GTYRAC	3 cut(s)	223, 346, 1549
HindIII	AAGCTT	2 cut(s)	1418, 1490
HpaII	CCGG	2 cut(s)	930, 1539
HphI	GGTGA	6 cut(s)	944, 1385, 1457, 1490, 1912, 2788
Hpy188I	TCNGA	9 cut(s)	202, 1137, 1281, 1530, 1837, 2023, 2250, 2710, 2812
HpyCH4III	ACNGT	7 cut(s)	528, 541, 709, 948, 1110, 1169, 1710
HpyCH4IV	ACGT	6 cut(s)	1098, 1246, 1981, 2554, 2675, 2763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	934, 2115, 2662
HpyF3I	CTNAG	4 cut(s)	1220, 1348, 1364, 2319
HpySE526I	ACGT	6 cut(s)	1098, 1246, 1981, 2554, 2675, 2763
HspAI	GCGC	3 cut(s)	661, 1935, 2004
Ksp22I	TGATCA	1 cut(s)	2485
LmnI	GCTCC	3 cut(s)	202, 1891, 2176
Lsp1109I	GCAGC	7 cut(s)	158, 423, 1245, 1328, 1764, 2057, 2598
MaeI	CTAG	5 cut(s)	23, 246, 657, 1211, 1313
MaeII	ACGT	6 cut(s)	1098, 1246, 1981, 2554, 2675, 2763
MaeIII	GTNAC	3 cut(s)	404, 788, 1149
MbiI	CCGCTC	1 cut(s)	2067
MfeI	CAATTG	2 cut(s)	123, 147
MflI	RGATCY	7 cut(s)	1360, 1406, 1432, 1478, 1504, 1556, 1741
MhlI	GDGCHC	3 cut(s)	930, 1835, 1981
MlyI	GAGTC	6 cut(s)	20, 926, 1060, 2223, 2301, 2691
MmeI	TCCRAC	5 cut(s)	731, 864, 1384, 1456, 1871
Mph1103I	ATGCAT	3 cut(s)	491, 876, 2030
MroXI	GAANNNNTTC	1 cut(s)	1842
MslI	CAYNNNNRTG	3 cut(s)	595, 960, 2544
MspA1I	CMGCKG	1 cut(s)	2382
MspI	CCGG	2 cut(s)	930, 1539
MspR9I	CCNGG	4 cut(s)	930, 1502, 1539, 2576
MunI	CAATTG	2 cut(s)	123, 147
Mva1269I	GAATGC	7 cut(s)	489, 561, 663, 976, 1596, 2030, 2109
MvaI	CCWGG	2 cut(s)	1502, 2576
MvnI	CGCG	1 cut(s)	1925
MwoI	GCNNNNNNNGC	3 cut(s)	934, 2115, 2662
NciI	CCSGG	2 cut(s)	930, 1539
NlaIV	GGNNCC	6 cut(s)	1408, 1480, 1893, 2367, 2570, 2735
NmuCI	GTSAC	2 cut(s)	404, 788
NsiI	ATGCAT	3 cut(s)	491, 876, 2030
NspI	RCATGY	1 cut(s)	874
PaeI	GCATGC	1 cut(s)	874
PagI	TCATGA	1 cut(s)	286
PctI	GAATGC	7 cut(s)	489, 561, 663, 976, 1596, 2030, 2109
PdmI	GAANNNNTTC	1 cut(s)	1842
PfeI	GAWTC	8 cut(s)	294, 331, 1138, 1207, 1260, 1390, 1815, 2186
PflFI	GACNNNGTC	1 cut(s)	2232
PleI	GAGTC	6 cut(s)	20, 925, 1059, 2223, 2301, 2690
PmaCI	CACGTG	1 cut(s)	1982
PmlI	CACGTG	1 cut(s)	1982
PpsI	GAGTC	6 cut(s)	20, 925, 1059, 2223, 2301, 2690
Ppu21I	YACGTR	3 cut(s)	1982, 2555, 2676
PshBI	ATTAAT	1 cut(s)	1572
PsiI	TTATAA	3 cut(s)	1094, 2826, 2832
Psp6I	CCWGG	2 cut(s)	1500, 2574
PspCI	CACGTG	1 cut(s)	1982
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	2 cut(s)	1500, 2574
PspN4I	GGNNCC	6 cut(s)	1408, 1480, 1893, 2367, 2570, 2735
PspPI	GGNCC	3 cut(s)	364, 2568, 2734
PstI	CTGCAG	1 cut(s)	2075
PsuI	RGATCY	7 cut(s)	1360, 1406, 1432, 1478, 1504, 1556, 1741
PsyI	GACNNNGTC	1 cut(s)	2232
PvuII	CAGCTG	1 cut(s)	2382
RsaI	GTAC	4 cut(s)	78, 966, 1375, 2553
RsaNI	GTAC	4 cut(s)	77, 965, 1374, 2552
RseI	CAYNNNNRTG	3 cut(s)	595, 960, 2544
Sau96I	GGNCC	3 cut(s)	364, 2568, 2734
SchI	GAGTC	6 cut(s)	20, 926, 1060, 2223, 2301, 2691
ScrFI	CCNGG	4 cut(s)	930, 1502, 1539, 2576
SduI	GDGCHC	3 cut(s)	930, 1835, 1981
SfcI	CTRYAG	2 cut(s)	921, 2071
SinI	GGWCC	2 cut(s)	364, 2734
SmiMI	CAYNNNNRTG	3 cut(s)	595, 960, 2544
SmlI	CTYRAG	2 cut(s)	555, 1048
SmoI	CTYRAG	2 cut(s)	555, 1048
SphI	GCATGC	1 cut(s)	874
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	5 cut(s)	23, 246, 657, 1211, 1313
StyD4I	CCNGG	4 cut(s)	928, 1500, 1537, 2574
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	7 cut(s)	528, 541, 709, 948, 1110, 1169, 1710
TaiI	ACGT	6 cut(s)	1101, 1249, 1984, 2557, 2678, 2766
TaqI	TCGA	5 cut(s)	726, 825, 1520, 2305, 2680
TatI	WGTACW	2 cut(s)	964, 1373
TauI	GCSGC	4 cut(s)	1239, 1897, 2070, 2118
TfiI	GAWTC	8 cut(s)	294, 331, 1138, 1207, 1260, 1390, 1815, 2186
TscAI	CASTG	4 cut(s)	714, 1179, 1663, 2806
TseFI	GTSAC	2 cut(s)	404, 788
TseI	GCWGC	7 cut(s)	171, 411, 1233, 1316, 1752, 2070, 2611
Tsp45I	GTSAC	2 cut(s)	404, 788
TspRI	CASTG	4 cut(s)	714, 1179, 1663, 2806
Tth111I	GACNNNGTC	1 cut(s)	2232
VpaK11BI	GGWCC	2 cut(s)	364, 2734
VspI	ATTAAT	1 cut(s)	1572
XceI	RCATGY	1 cut(s)	874
XcmI	CCANNNNNNNNNTGG	2 cut(s)	161, 2604
XmaJI	CCTAGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	1842
XspI	CTAG	5 cut(s)	23, 246, 657, 1211, 1313
Zsp2I	ATGCAT	3 cut(s)	491, 876, 2030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.