Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Forward (+)

43586600 .. 43587040

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAAAGTGGGTTGTGCCACTCCACATTATTGGCCGCCAATAATATGAGTTGCTCAACCACGGTGGCTATAGGGAACTCAGTATTCCCGCCAAATTCAAACTCAAAATCCAGAAACTCCCAAAATCGGAGAGAAGTCATCTCCCTGTTGCAGAAATGCAAACACTATCAGATCCCACAAATACATGCTAAAATAATAAGAAATGGCCAGGACCAAGACCCATTCGTCGTCTTCGAGCTTCTTCGTCTCTGCTCCAACCTCAACTCCACTGACTATGCCTCCAAGGTTTTCCGACGCACCCAATCCCCAAACGTGTATCTCTACACTGCTCTCATTGACGGGTTTGTGTCGTCTGGCTATTACCTTGATGGGATTCGTCTTTACTGTCAGATGGTCAATGAGTTTATATTTCGGACAAATATGCCATCACTTCTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

9.15

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AciI	CCGC	2 cut(s)	36, 89
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	33, 205
AcsI	RAATTY	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	207
AleI	CACNNNNGTG	1 cut(s)	433
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	33, 205
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	223
BccI	CCATC	3 cut(s)	362, 385, 433
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	60, 282
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 263, 278, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	60, 282
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	35, 207
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	35, 207
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	36, 89
BspANI	GGCC	2 cut(s)	35, 207
BspCNI	CTCAG	1 cut(s)	92
BspPI	GGATC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	60, 282
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	64, 386
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	35, 207
BtgI	CCRYGG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	267, 324
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	5 cut(s)	35, 68, 207, 238, 357
CviKI_1	RGCY	5 cut(s)	35, 68, 207, 238, 357
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	33, 205
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	188
FaiI	YATR	6 cut(s)	47, 71, 186, 276, 407, 422
FatI	CATG	1 cut(s)	184
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	35, 207
HgaI	GACGC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	1 cut(s)	373
Hpy188I	TCNGA	5 cut(s)	129, 171, 293, 390, 414
Hpy188III	TCNNGA	1 cut(s)	111
Hpy99I	CGWCG	2 cut(s)	230, 297
HpyCH4III	ACNGT	2 cut(s)	64, 386
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	4, 151, 159
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	5 cut(s)	124, 158, 194, 221, 339
MaeII	ACGT	1 cut(s)	312
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	223, 233
MflI	RGATCY	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	279, 316
MnlI	CCTC	2 cut(s)	269, 289
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	433
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	188
NspI	RCATGY	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	433
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	5 cut(s)	240, 261, 288, 315, 366
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	36, 89
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	64, 386
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	373
TscAI	CASTG	2 cut(s)	274, 331
TspRI	CASTG	2 cut(s)	274, 331
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.