MD10G1150600.v1.1

Poly(A)-specific ribonuclease PARN-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009492
Physical Location & Seq
Reverse (-)
23734309 .. 23737143
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1150600.v1.1.491

Sequence Viewer

Length: 1845 bp
ATGGCGTCTCTGCCTCCACAAATACGGCGCCGTTTTCTCAGCACCACCACCACCAATGTCTCAAGGAAATGGGCCGTGAAGGAAGTGACGAAGTCCAATTTTTCCGAGTCCCTGGAGGAGTTCAAGAACCACTTGTCCAGTTCCGACTTCGTGGCCGTCTCGCTGCAGAAAACGGGGTCGCATCGTGCGCCATGGCACCGCCCCCAGCCCTTCGACACCGTCGACACGTCGTATCGGAAAGCCAAGTACGCCGCCGAGCGGTTCCAGCTTCTCCAGTTCGCCGCCTGCCCCTTCACTCTCAGAGCCTCTAAGCTCACCCTTCACCCATACAACTTTGTATTGTTCCCAAGGGATGAATTGAAGATGGGGATGCCAACTTATAGCTTTTCAGCTCAAACATCACATTTGACTTCCATGGCGGAAGAAGGTTTTGATTTCAATGCCTGCATATATAATGGTATTTCGTACTTGTCTAGAGCACAGGAATCTGCGGCTAAAGTTTGGATAGGGAATCCGGCCGCCAGCAGCTATGTAACGAACACTTCTTCGACCCATACCATTGCTGATACAGTTTTCGTAGAAAGAATTAAATCGCGAGTTACGCATTGGAAAACTGCATTCAAAAGCACAAAGAAAGATGATGCTCTGTTGAGTTCCTTAAGAAAAATTGTAATGCGAAGTGAAATGTACGGAACAAGACCTTGCATGGATCTAGATGTTTGTAGTGAACGTCAAGTCCAGCTTGCACTGGAGATGTTGAAGGAGTTCTCTGATGACCTTGTTCCTTTAATAATCCCAGCAAAGGGCGGAGGAACTCAGGTTGTTCGTGTTGTTTTGACAAGTTCTAAAGAGGACAGGGAATTGTTTGAGAGAGAGCTTCAAAACCTCGAGGAGGAACAGAACAAGAGAGTTCGTGGATTTCGAGAGGTGATCGATTTGATTTCTGCTTCACAGAAACCTGTTGTCTCCCACAATTCCCTTAATGATTTCACAGTTATTCATTCAGAATTTCTCTCTCCCCTGCCGACTAATGTAGATGAGTTTGTGGGTTCCTTGCTCTCGGTTTTCCCCCACATACTTGATGTCAGCCATCTGATGAAGAATATTGGCCCTCTAAGGAAGATGACCAATATTCCTGCAGCTATTTCATACTTGAATAATCATTACTTCGCACCCATTGATATGGAAATTTCGCCTCAAGAAAATGAAGGCAACATTCATAATCTTTGTGTTGTGAAGATGTGCTACTTTTTTGCAAAGCTCTGCTACATTCTGAAAATTTCCAAAAATGCTATGGTATCTAACAATGCACTGTTGGATCCAGCCCTTGAAGAGTACACAAACATTTCCAATCCGTGTTCTGACAACCCCCAAGAATCAACCAATGAGGATATCAGAGTCTGGACAAAGAACATGAGAAAGGTCAGCTGTGATCATTTGGTATTCTTATGGGGATTCAGAAATGGGATGACTGCGGGGATGCTCAAGAGCTTGTTGCACAAGTCACATGCCGTCTTCTCTGAAGAATTTGATGTTCGGTTAGTGGATAAGAGCTGTGCTATTGTTGTTTTCTGGCAACCTGCTTTATCCCAAACTTTTCTGGATGCCGTCAGTAGTGAAGAGATTTGTGATTCTTTAAGGGAGATCGTTTCGGAGGGCCTAAGAGCATCGAATTATGAAACTTACAATAGAGTCTGCAGGTTAGGCTTGTGGGAGGCAGATTTAGCAGAGTCCATGGACAAAGCCTTGGAAGACTCGGACTGCCTTATGGAAGCTAATTCATCTACATATTCTAAAGACATTTATTGGTCTAGCGACTCAACGATTAATTTTGATGACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0043167 GO:0043169
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

615

Amino Acids

69.65

Weight (kDa)

5.94

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 29 - 387 5.6e-62 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 887
Acc36I ACCTGC 2 cut(s) 1588, 1689
AccB1I GGYRCC 2 cut(s) 27, 195
AccBSI CCGCTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 595
AciI CCGC 9 cut(s) 199, 252, 259, 282, 419, 491, 519, 807, 1475
AclWI GGATC 3 cut(s) 717, 1313, 1326
AcoI YGGCCR 2 cut(s) 153, 516
AcsI RAATTY 4 cut(s) 1007, 1188, 1278, 1526
AcuI CTGAAG 1 cut(s) 1542
AcyI GRCGYC 2 cut(s) 5, 28
AfaI GTAC 4 cut(s) 248, 467, 689, 1337
AfiI CCNNNNNNNGG 4 cut(s) 258, 802, 803, 892
AflII CTTAAG 1 cut(s) 658
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 8 cut(s) 124, 361, 439, 622, 760, 881, 1156, 1331
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 1 cut(s) 111
AloI GAACNNNNNNTCC 4 cut(s) 119, 151, 720, 752
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 4 cut(s) 12, 64, 163, 970
AlwI GGATC 3 cut(s) 717, 1313, 1326
AlwNI CAGNNNCTG 1 cut(s) 1401
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 5 cut(s) 72, 153, 516, 1108, 1657
ApeKI GCWGC 3 cut(s) 163, 525, 1139
ApoI RAATTY 4 cut(s) 1007, 1188, 1278, 1526
AseI ATTAAT 1 cut(s) 1827
Asp700I GAANNNNTTC 1 cut(s) 764
AspLEI GCGC 2 cut(s) 30, 190
AspS9I GGNCC 3 cut(s) 72, 1109, 1657
AsuHPI GGTGA 3 cut(s) 307, 314, 940
AvaI CYCGRG 1 cut(s) 887
BamHI GGATCC 1 cut(s) 1318
BanI GGYRCC 2 cut(s) 27, 195
BarI GAAGNNNNNNTAC 2 cut(s) 1229, 1261
BbsI GAAGAC 2 cut(s) 1507, 1758
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 150, 537, 1151
BccI CCATC 2 cut(s) 358, 1098
BceAI ACGGC 6 cut(s) 15, 41, 59, 140, 1496, 1592
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 4 cut(s) 12, 64, 163, 970
BfaI CTAG 3 cut(s) 474, 713, 1812
BfmI CTRYAG 3 cut(s) 164, 1137, 1696
BfoI RGCGCY 1 cut(s) 31
BfrI CTTAAG 1 cut(s) 658
BfuAI ACCTGC 2 cut(s) 1588, 1689
BisI GCNGC 7 cut(s) 164, 252, 282, 492, 519, 526, 1140
BlsI GCNGC 7 cut(s) 165, 253, 283, 493, 520, 527, 1141
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 3 cut(s) 72, 1109, 1657
BmiI GGNNCC 5 cut(s) 29, 197, 263, 1051, 1320
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 6 cut(s) 190, 360, 631, 1470, 1594, 1676
BpiI GAAGAC 2 cut(s) 1507, 1758
BpmI CTGGAG 3 cut(s) 134, 257, 770
BpuEI CTTGAG 3 cut(s) 46, 1182, 1469
Bsa29I ATCGAT 1 cut(s) 933
BsaHI GRCGYC 2 cut(s) 5, 28
BsaJI CCNNGG 6 cut(s) 111, 191, 347, 414, 1734, 1746
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 802, 803, 892
Bse1I ACTGG 3 cut(s) 138, 274, 753
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 6 cut(s) 111, 191, 347, 414, 1734, 1746
BseGI GGATG 5 cut(s) 358, 375, 1473, 1485, 1609
BseLI CCNNNNNNNGG 4 cut(s) 258, 802, 803, 892
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 3 cut(s) 52, 313, 830
BseNI ACTGG 3 cut(s) 138, 274, 753
BseRI GAGGAG 2 cut(s) 131, 905
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 3 cut(s) 150, 537, 1151
BseYI CCCAGC 2 cut(s) 204, 796
Bsh1236I CGCG 1 cut(s) 595
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 5 cut(s) 74, 155, 518, 1110, 1659
BshNI GGYRCC 2 cut(s) 27, 195
BshVI ATCGAT 1 cut(s) 933
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 4 cut(s) 258, 802, 803, 892
BsmAI GTCTC 4 cut(s) 12, 64, 163, 970
BsmBI CGTCTC 2 cut(s) 12, 163
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 5 cut(s) 74, 155, 518, 1110, 1659
BsoBI CYCGRG 1 cut(s) 887
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 5 cut(s) 709, 930, 1318, 1432, 1644
Bsp19I CCATGG 3 cut(s) 191, 414, 1734
Bsp68I TCGCGA 1 cut(s) 595
BspACI CCGC 9 cut(s) 199, 252, 259, 282, 419, 491, 519, 807, 1475
BspANI GGCC 5 cut(s) 74, 155, 518, 1110, 1659
BspCNI CTCAG 3 cut(s) 51, 312, 829
BspDI ATCGAT 1 cut(s) 933
BspFNI CGCG 1 cut(s) 595
BspLI GGNNCC 5 cut(s) 29, 197, 263, 1051, 1320
BspMAI CTGCAG 3 cut(s) 168, 1141, 1700
BspMI ACCTGC 2 cut(s) 1588, 1689
BspPI GGATC 3 cut(s) 717, 1313, 1326
BspT107I GGYRCC 2 cut(s) 27, 195
BspTI CTTAAG 1 cut(s) 658
BsrBI CCGCTC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 3 cut(s) 138, 274, 753
BssECI CCNNGG 6 cut(s) 111, 191, 347, 414, 1734, 1746
BssMI GATC 5 cut(s) 709, 930, 1318, 1432, 1644
BssNI GRCGYC 2 cut(s) 5, 28
BssT1I CCWWGG 5 cut(s) 191, 347, 414, 1734, 1746
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 4 cut(s) 220, 571, 994, 1314
Bst6I CTCTTC 2 cut(s) 1326, 1614
BstACI GRCGYC 2 cut(s) 5, 28
BstAFI CTTAAG 1 cut(s) 658
BstC8I GCNNGC 4 cut(s) 286, 445, 523, 744
BstDEI CTNAG 6 cut(s) 38, 299, 309, 816, 1115, 1661
BstDSI CCRYGG 3 cut(s) 191, 414, 1734
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 5 cut(s) 358, 375, 1473, 1485, 1609
BstFNI CGCG 1 cut(s) 595
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 190
BstKTI GATC 5 cut(s) 712, 933, 1321, 1435, 1647
BstMAI GTCTC 4 cut(s) 12, 64, 163, 970
BstMBI GATC 5 cut(s) 709, 930, 1318, 1432, 1644
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 6 cut(s) 187, 248, 265, 601, 1704, 1724
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 1511
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 3 cut(s) 164, 1137, 1696
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 150, 537, 1151
BstV2I GAAGAC 2 cut(s) 1507, 1758
BstX2I RGATCY 2 cut(s) 709, 1318
BstXI CCANNNNNNTGG 1 cut(s) 1183
BstYI RGATCY 2 cut(s) 709, 1318
BstZI CGGCCG 1 cut(s) 516
Bsu15I ATCGAT 1 cut(s) 933
BsuRI GGCC 5 cut(s) 74, 155, 518, 1110, 1659
BsuTUI ATCGAT 1 cut(s) 933
BtgI CCRYGG 3 cut(s) 191, 414, 1734
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 5 cut(s) 358, 375, 1473, 1485, 1609
BtsIMutI CAGTG 2 cut(s) 746, 1310
BtuMI TCGCGA 1 cut(s) 595
BveI ACCTGC 2 cut(s) 1588, 1689
Cac8I GCNNGC 4 cut(s) 286, 445, 523, 744
CaiI CAGNNNCTG 1 cut(s) 1401
CfoI GCGC 2 cut(s) 30, 190
Cfr13I GGNCC 3 cut(s) 72, 1109, 1657
ClaI ATCGAT 1 cut(s) 933
Csp6I GTAC 4 cut(s) 247, 466, 688, 1336
CviAII CATG 6 cut(s) 192, 415, 706, 1414, 1508, 1735
CviQI GTAC 4 cut(s) 247, 466, 688, 1336
DdeI CTNAG 6 cut(s) 38, 299, 309, 816, 1115, 1661
DinI GGCGCC 1 cut(s) 29
DpnI GATC 5 cut(s) 711, 932, 1320, 1434, 1646
DpnII GATC 5 cut(s) 709, 930, 1318, 1432, 1644
EaeI YGGCCR 2 cut(s) 153, 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 1326, 1614
EarI CTCTTC 2 cut(s) 1326, 1614
EciI GGCGGA 2 cut(s) 434, 822
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 5 cut(s) 191, 347, 414, 1734, 1746
Eco32I GATATC 1 cut(s) 1393
Eco52I CGGCCG 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 1542
Eco88I CYCGRG 1 cut(s) 887
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 1657
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 1393
EcoT14I CCWWGG 5 cut(s) 191, 347, 414, 1734, 1746
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
ErhI CCWWGG 5 cut(s) 191, 347, 414, 1734, 1746
Esp3I CGTCTC 2 cut(s) 12, 163
FaeI CATG 6 cut(s) 195, 418, 709, 1417, 1511, 1738
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 726, 758
FaqI GGGAC 1 cut(s) 94
FatI CATG 6 cut(s) 191, 414, 705, 1413, 1507, 1734
FauI CCCGC 1 cut(s) 1468
FbaI TGATCA 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 7 cut(s) 164, 252, 282, 492, 519, 526, 1140
FokI GGATG 5 cut(s) 365, 382, 1480, 1492, 1616
Fsp4HI GCNGC 7 cut(s) 164, 252, 282, 492, 519, 526, 1140
FspBI CTAG 3 cut(s) 474, 713, 1812
GlaI GCGC 2 cut(s) 29, 189
GluI GCNGC 7 cut(s) 164, 252, 282, 492, 519, 526, 1140
GsaI CCCAGC 2 cut(s) 208, 800
GsuI CTGGAG 3 cut(s) 134, 257, 770
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 5 cut(s) 74, 155, 518, 1110, 1659
HapII CCGG 1 cut(s) 515
HhaI GCGC 2 cut(s) 30, 190
Hin1I GRCGYC 2 cut(s) 5, 28
Hin1II CATG 6 cut(s) 195, 418, 709, 1417, 1511, 1738
Hin6I GCGC 2 cut(s) 28, 188
HinP1I GCGC 2 cut(s) 28, 188
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 307, 314, 940
Hpy166II GTNNAC 3 cut(s) 223, 728, 1338
Hpy188III TCNNGA 9 cut(s) 124, 474, 594, 713, 923, 1199, 1402, 1486, 1601
Hpy8I GTNNAC 3 cut(s) 223, 728, 1338
Hpy99I CGWCG 2 cut(s) 224, 232
HpyAV CCTTC 7 cut(s) 73, 220, 301, 329, 419, 754, 1202
HpyCH4III ACNGT 4 cut(s) 220, 571, 994, 1314
HpyCH4IV ACGT 2 cut(s) 227, 730
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 248, 265, 601, 1704, 1724
HpyF3I CTNAG 6 cut(s) 38, 299, 309, 816, 1115, 1661
HpySE526I ACGT 2 cut(s) 227, 730
Hsp92I GRCGYC 2 cut(s) 5, 28
Hsp92II CATG 6 cut(s) 195, 418, 709, 1417, 1511, 1738
HspAI GCGC 2 cut(s) 28, 188
KasI GGCGCC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 5 cut(s) 709, 930, 1318, 1432, 1644
Lsp1109I GCAGC 3 cut(s) 150, 537, 1151
LweI GCATC 6 cut(s) 190, 360, 631, 1470, 1594, 1676
MaeI CTAG 3 cut(s) 474, 713, 1812
MaeII ACGT 2 cut(s) 227, 730
MaeIII GTNAC 4 cut(s) 85, 532, 598, 1503
MalI GATC 5 cut(s) 711, 932, 1320, 1434, 1646
MbiI CCGCTC 1 cut(s) 259
MboI GATC 5 cut(s) 709, 930, 1318, 1432, 1644
MflI RGATCY 2 cut(s) 709, 1318
MhlI GDGCHC 1 cut(s) 481
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 6 cut(s) 116, 1407, 1701, 1739, 1748, 1811
MmeI TCCRAC 2 cut(s) 168, 1296
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 6 cut(s) 588, 659, 788, 981, 1637, 1827
MslI CAYNNNNRTG 1 cut(s) 1181
MspA1I CMGCKG 1 cut(s) 1428
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 595
MwoI GCNNNNNNNGC 6 cut(s) 187, 248, 265, 601, 1704, 1724
NarI GGCGCC 1 cut(s) 28
NcoI CCATGG 3 cut(s) 191, 414, 1734
NdeII GATC 5 cut(s) 709, 930, 1318, 1432, 1644
NlaIII CATG 6 cut(s) 195, 418, 709, 1417, 1511, 1738
NlaIV GGNNCC 5 cut(s) 29, 197, 263, 1051, 1320
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 2 cut(s) 85, 1503
NruI TCGCGA 1 cut(s) 595
NspI RCATGY 1 cut(s) 1511
PaeR7I CTCGAG 1 cut(s) 887
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 919
PctI GAATGC 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 5 cut(s) 485, 511, 1376, 1455, 1631
PflFI GACNNNGTC 2 cut(s) 91, 218
PkrI GCNGC 7 cut(s) 165, 253, 283, 493, 520, 527, 1141
PleI GAGTC 6 cut(s) 115, 1406, 1700, 1738, 1748, 1811
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 6 cut(s) 115, 1406, 1700, 1738, 1748, 1811
PshBI ATTAAT 1 cut(s) 1827
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 2 cut(s) 204, 796
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 5 cut(s) 29, 197, 263, 1051, 1320
PspPI GGNCC 3 cut(s) 72, 1109, 1657
PspXI VCTCGAGB 1 cut(s) 887
PstI CTGCAG 3 cut(s) 168, 1141, 1700
PstNI CAGNNNCTG 1 cut(s) 1401
PsuI RGATCY 2 cut(s) 709, 1318
PsyI GACNNNGTC 2 cut(s) 91, 218
PvuII CAGCTG 1 cut(s) 1428
RruI TCGCGA 1 cut(s) 595
RsaI GTAC 4 cut(s) 248, 467, 689, 1337
RsaNI GTAC 4 cut(s) 247, 466, 688, 1336
RseI CAYNNNNRTG 1 cut(s) 1181
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 6 cut(s) 588, 659, 788, 981, 1637, 1827
SatI GCNGC 7 cut(s) 164, 252, 282, 492, 519, 526, 1140
Sau3AI GATC 5 cut(s) 709, 930, 1318, 1432, 1644
Sau96I GGNCC 3 cut(s) 72, 1109, 1657
SchI GAGTC 6 cut(s) 116, 1407, 1701, 1739, 1748, 1811
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 6 cut(s) 190, 360, 631, 1470, 1594, 1676
SfcI CTRYAG 3 cut(s) 164, 1137, 1696
SfoI GGCGCC 1 cut(s) 29
Sfr274I CTCGAG 1 cut(s) 887
SlaI CTCGAG 1 cut(s) 887
SmiMI CAYNNNNRTG 1 cut(s) 1181
SmlI CTYRAG 5 cut(s) 61, 658, 887, 1197, 1484
SmoI CTYRAG 5 cut(s) 61, 658, 887, 1197, 1484
SsiI CCGC 9 cut(s) 199, 252, 259, 282, 419, 491, 519, 807, 1475
SspDI GGCGCC 1 cut(s) 27
SspI AATATT 2 cut(s) 1105, 1132
SspMI CTAG 3 cut(s) 474, 713, 1812
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 5 cut(s) 191, 347, 414, 1734, 1746
TaaI ACNGT 4 cut(s) 220, 571, 994, 1314
TaiI ACGT 2 cut(s) 230, 733
TaqI TCGA 7 cut(s) 213, 222, 548, 888, 922, 933, 1670
TatI WGTACW 1 cut(s) 1335
TauI GCSGC 4 cut(s) 254, 284, 494, 521
TfiI GAWTC 5 cut(s) 485, 511, 1376, 1455, 1631
Tru1I TTAA 6 cut(s) 588, 659, 788, 981, 1637, 1827
Tru9I TTAA 6 cut(s) 588, 659, 788, 981, 1637, 1827
TscAI CASTG 2 cut(s) 753, 1317
TseFI GTSAC 2 cut(s) 85, 1503
TseI GCWGC 3 cut(s) 163, 525, 1139
Tsp45I GTSAC 2 cut(s) 85, 1503
TspDTI ATGAA 8 cut(s) 369, 989, 1112, 1137, 1208, 1221, 1692, 1770
TspGWI ACGGA 2 cut(s) 705, 1344
TspRI CASTG 2 cut(s) 753, 1317
Tth111I GACNNNGTC 2 cut(s) 91, 218
Vha464I CTTAAG 1 cut(s) 658
VspI ATTAAT 1 cut(s) 1827
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 4 cut(s) 1007, 1188, 1278, 1526
XbaI TCTAGA 2 cut(s) 473, 712
XceI RCATGY 1 cut(s) 1511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1291
XhoI CTCGAG 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 3 cut(s) 474, 713, 1812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.