Prupe.8G189300_v2.0.a1

Poly(A)-specific ribonuclease PARN-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18493398 .. 18496681
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G189300.2

Sequence Viewer

Length: 1845 bp
ATGGCGTCTCTGCCTCCACTGATACGGCGACGTTTTCTCAGCACCAGCACCAATGTCCCAAAGAAATGGGCGGTGAAGGAAGTGACAAAGTTGAATTTCAAGGAGTCCCTGGAGGAGTTCAAGGACCACCTCGCCGGCTCGAACTTCGTAGCCGTCTCTCTGCAGAAAACGGGGTCGTTTTCTGCGGCTTGGCACCGTCCCCAACCCTTCGACACCGCCGACACATCGTATTGCAAGGCCAAGTACGCCGCAGAAAGGTTCCAGCTTCTTCAGTTCGCCGCCTGCCCCTTCACTCTCAGAGCCTCCAAGCTCACTCCTCACCCATACAACTTTGTATTGTTCCCAAGAGATGAATTGAAGCTGGGGATGCCATCTTATAGCTTTTCAGTTCAAACATCACATTTGACTTCCATGGCTCAAGAAGGTTTTGATTTTAATGCCTGCATATATAATGGTATATCATACTTGTCCAGAGCACAAGAATCCGCAGCTAAAGTGCGGATAGGGAATCCAAGCCCCAGCACCTATATAATGAACTCTTCTTCGACCCATACCGTTGCTGATACAGTTTTTCTTGAAAGAATTAAATCACGAGTCAAGCATTGGAAGAATGCGTGTAGGAGTTCAAAGAAAGATGATGCTCTGCTTAGTTCCTTACGAAAACTTGTCTTGGGGAGTGAACTTTATGGATCAAGGCCATGCATGAATATAGATGTTTGCAGTGAACGTCAAATACAGCTTGCATTGGAGATGTTGAGGGAGTTCTCTGATGAACTTGTTCCTTTAATAATCCCAGCAAAGGGTGGAGGAACTCAGGCTGTTCGTGTCGTTCTCACAAGTTCTAAGGAGGACAAGGACTCGTTTGAGAGAGAACTTCAAAACCTTGAAGAGGAACAAAACCAGAGAGTTCGGGGGTTTCGAGAGGTGATCGATTTGATTTCTGCTTCACAGAAACCTGTTGTCTCCCACAATGCCCTTAATGATTTCACATTTATTCATTCAAAGTTTCTCTCCCCCCTGCCGACTAATGTAGACGAGTTCATGGACTCCTTGCACTTGGTTTTCCCTCACTTACTTGATGTCAACCATATGATGAAGAATATTGGCCCTCTAAGGAAGGTGACCAATATACATGCAGCTATTTCCTACCTGAATAATCATTACTTTGCACCCATTGATATGGAAAACTTGCCCCAAGAAAATGAAGAAGGCACAGTTCATAGGCATAATGTGGTGAAGATGTGTTATCTGTTTGCAAAGCTCTGCTCCATTCTGAAAATTCCAGACAATGCTATGACATCTAACAATGCACTGTTGGCTCCAGCCCCTGAAGAGTATACAAACATATCCAATCCGTACCCTGACAGCCCCCAAGAATCAATCAATGATGATATCAGAATCTGGACAAAGAATATGAAAAAAGTCAGCTGCAATCATTTGGTATTCTTATGGGGATTTAGAAGTGGCATGACTGCGGGGATGCTCAAGAGCTTGTTGCACAAGTCACATGACGTTTTCTCAGAAGAATTTGATGTTCGGTTAGTGGACAAGAGCTGTGCTATTGTTGTTTTCTGGCGACCTGGTTTATCCGAAACTTTCCTGGATTTCGTGAGTAGTGAAGAGATTTGTGGATCTTTAAGGGAGATAGTTTCGGAGGGCCTAAGAGCATCGAGCTATGAGGCTTACAAGAGAGTCTGCAGGTTGGGCTTATGGGAAGCAAATTTAGCAGAGTCCTTAGATAGAGCCTTAGAAGACCCAGACTGCCTTGTGGAAGCTAATTTGGCAGCAAACTGCAAAGAAATCTATTGGTCTAGCGACTCAACGATTAATTTTGACAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

615

Amino Acids

69.45

Weight (kDa)

6.43

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1689
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 2 cut(s) 1032, 1337
AciI CCGC 8 cut(s) 71, 185, 216, 249, 279, 486, 499, 1475
AclWI GGATC 2 cut(s) 697, 1639
AcsI RAATTY 4 cut(s) 94, 1278, 1526, 1720
AcuI CTGAAG 2 cut(s) 254, 1350
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 245, 1358
AfiI CCNNNNNNNGG 4 cut(s) 255, 799, 800, 889
AjnI CCWGG 3 cut(s) 108, 1579, 1599
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 3 cut(s) 12, 160, 967
AlwI GGATC 2 cut(s) 697, 1639
AlwNI CAGNNNCTG 2 cut(s) 1328, 1401
AoxI GGCC 4 cut(s) 237, 695, 1105, 1657
ApeKI GCWGC 4 cut(s) 488, 1136, 1428, 1784
ApoI RAATTY 4 cut(s) 94, 1278, 1526, 1720
AseI ATTAAT 1 cut(s) 1827
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 124, 1106, 1657
AsuHPI GGTGA 5 cut(s) 85, 311, 937, 1132, 1246
AvaII GGWCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 192
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 1758
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 4 cut(s) 500, 1148, 1415, 1796
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 41, 137
BciT130I CCWGG 3 cut(s) 110, 1581, 1601
BcoDI GTCTC 3 cut(s) 12, 160, 967
BfaI CTAG 1 cut(s) 1812
BfmI CTRYAG 2 cut(s) 161, 1696
BfuAI ACCTGC 1 cut(s) 1689
BisI GCNGC 7 cut(s) 186, 249, 279, 489, 1137, 1429, 1785
BlsI GCNGC 7 cut(s) 187, 250, 280, 490, 1138, 1430, 1786
Bme1390I CCNGG 3 cut(s) 110, 1581, 1601
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 124, 1106, 1657
BmiI GGNNCC 3 cut(s) 194, 260, 1320
BmrFI CCNGG 3 cut(s) 110, 1581, 1601
BmsI GCATC 4 cut(s) 357, 628, 1470, 1676
BpiI GAAGAC 1 cut(s) 1758
BpmI CTGGAG 2 cut(s) 131, 1305
BpuEI CTTGAG 2 cut(s) 402, 1469
Bsa29I ATCGAT 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 108, 411
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 799, 800, 889
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 3 cut(s) 110, 1581, 1601
BseCI ATCGAT 1 cut(s) 930
BseDI CCNNGG 2 cut(s) 108, 411
BseGI GGATG 2 cut(s) 372, 1485
BseLI CCNNNNNNNGG 4 cut(s) 255, 799, 800, 889
BseMII CTCAG 4 cut(s) 52, 310, 827, 1533
BseRI GAGGAG 2 cut(s) 128, 306
BseXI GCAGC 4 cut(s) 500, 1148, 1415, 1796
BseYI CCCAGC 3 cut(s) 361, 518, 793
BshFI GGCC 4 cut(s) 239, 697, 1107, 1659
BshNI GGYRCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 3 cut(s) 41, 91, 183
BslI CCNNNNNNNGG 4 cut(s) 255, 799, 800, 889
BsmAI GTCTC 3 cut(s) 12, 160, 967
BsmBI CGTCTC 2 cut(s) 12, 160
BsmFI GGGAC 3 cut(s) 41, 91, 183
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 4 cut(s) 239, 697, 1107, 1659
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 3 cut(s) 689, 927, 1631
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 8 cut(s) 71, 185, 216, 249, 279, 486, 499, 1475
BspANI GGCC 4 cut(s) 239, 697, 1107, 1659
BspCNI CTCAG 4 cut(s) 51, 309, 826, 1532
BspDI ATCGAT 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 194, 260, 1320
BspMAI CTGCAG 2 cut(s) 165, 1700
BspMI ACCTGC 1 cut(s) 1689
BspPI GGATC 2 cut(s) 697, 1639
BspT107I GGYRCC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 108, 411
BssMI GATC 3 cut(s) 689, 927, 1631
BssNAI GTATAC 1 cut(s) 1338
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 411
Bst1107I GTATAC 1 cut(s) 1338
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 3 cut(s) 110, 1581, 1601
Bst4CI ACNGT 5 cut(s) 197, 556, 568, 1216, 1314
Bst6I CTCTTC 4 cut(s) 544, 882, 1326, 1614
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 136, 283, 442, 741
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 1120
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 2 cut(s) 372, 1485
BstKTI GATC 3 cut(s) 692, 930, 1634
BstMAI GTCTC 3 cut(s) 12, 160, 967
BstMBI GATC 3 cut(s) 689, 927, 1631
BstMWI GCNNNNNNNGC 6 cut(s) 245, 367, 1316, 1704, 1724, 1781
BstNI CCWGG 3 cut(s) 110, 1581, 1601
BstNSI RCATGY 1 cut(s) 1136
BstPI GGTNACC 1 cut(s) 1120
BstSCI CCNGG 3 cut(s) 108, 1579, 1599
BstSFI CTRYAG 2 cut(s) 161, 1696
BstV1I GCAGC 4 cut(s) 500, 1148, 1415, 1796
BstV2I GAAGAC 1 cut(s) 1758
BstX2I RGATCY 1 cut(s) 1631
BstXI CCANNNNNNTGG 2 cut(s) 66, 1180
BstYI RGATCY 1 cut(s) 1631
BstZ17I GTATAC 1 cut(s) 1338
Bsu15I ATCGAT 1 cut(s) 930
BsuRI GGCC 4 cut(s) 239, 697, 1107, 1659
BsuTUI ATCGAT 1 cut(s) 930
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 372, 1485
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 3 cut(s) 17, 727, 1310
BveI ACCTGC 1 cut(s) 1689
Cac8I GCNNGC 4 cut(s) 136, 283, 442, 741
CaiI CAGNNNCTG 2 cut(s) 1328, 1401
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 124, 1106, 1657
ClaI ATCGAT 1 cut(s) 930
CsiI ACCWGGT 1 cut(s) 1579
Csp6I GTAC 2 cut(s) 244, 1357
CviAII CATG 7 cut(s) 412, 699, 703, 1042, 1133, 1468, 1508
CviQI GTAC 2 cut(s) 244, 1357
DpnI GATC 3 cut(s) 691, 929, 1633
DpnII GATC 3 cut(s) 689, 927, 1631
Eam1104I CTCTTC 4 cut(s) 544, 882, 1326, 1614
EarI CTCTTC 4 cut(s) 544, 882, 1326, 1614
Eco130I CCWWGG 1 cut(s) 411
Eco32I GATATC 1 cut(s) 1393
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 254, 1350
Eco91I GGTNACC 1 cut(s) 1120
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoO109I RGGNCCY 1 cut(s) 1657
EcoO65I GGTNACC 1 cut(s) 1120
EcoRII CCWGG 3 cut(s) 108, 1579, 1599
EcoRV GATATC 1 cut(s) 1393
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 2 cut(s) 12, 160
FaeI CATG 7 cut(s) 415, 702, 706, 1045, 1136, 1471, 1511
FaqI GGGAC 3 cut(s) 41, 91, 183
FatI CATG 7 cut(s) 411, 698, 702, 1041, 1132, 1467, 1507
FauI CCCGC 1 cut(s) 1468
FauNDI CATATG 1 cut(s) 1089
FblI GTMKAC 2 cut(s) 1032, 1337
Fnu4HI GCNGC 7 cut(s) 186, 249, 279, 489, 1137, 1429, 1785
FokI GGATG 2 cut(s) 379, 1492
Fsp4HI GCNGC 7 cut(s) 186, 249, 279, 489, 1137, 1429, 1785
FspBI CTAG 1 cut(s) 1812
GluI GCNGC 7 cut(s) 186, 249, 279, 489, 1137, 1429, 1785
GsaI CCCAGC 3 cut(s) 365, 522, 797
GsuI CTGGAG 2 cut(s) 131, 1305
HaeIII GGCC 4 cut(s) 239, 697, 1107, 1659
HapII CCGG 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 415, 702, 706, 1045, 1136, 1471, 1511
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HpaII CCGG 1 cut(s) 135
HphI GGTGA 5 cut(s) 85, 311, 937, 1132, 1246
Hpy166II GTNNAC 6 cut(s) 680, 725, 1033, 1084, 1338, 1546
Hpy188I TCNGA 7 cut(s) 299, 769, 1275, 1397, 1522, 1591, 1654
Hpy188III TCNNGA 9 cut(s) 419, 471, 575, 591, 920, 1283, 1402, 1486, 1609
Hpy8I GTNNAC 6 cut(s) 680, 725, 1033, 1084, 1338, 1546
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 6 cut(s) 70, 217, 298, 416, 1111, 1202
HpyCH4III ACNGT 5 cut(s) 197, 556, 568, 1216, 1314
HpyCH4IV ACGT 3 cut(s) 31, 727, 1512
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 367, 1316, 1704, 1724, 1781
HpySE526I ACGT 3 cut(s) 31, 727, 1512
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 415, 702, 706, 1045, 1136, 1471, 1511
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 689, 927, 1631
LmnI GCTCC 2 cut(s) 1271, 1324
Lsp1109I GCAGC 4 cut(s) 500, 1148, 1415, 1796
LweI GCATC 4 cut(s) 357, 628, 1470, 1676
MabI ACCWGGT 1 cut(s) 1579
MaeI CTAG 1 cut(s) 1812
MaeII ACGT 3 cut(s) 31, 727, 1512
MaeIII GTNAC 3 cut(s) 82, 1120, 1503
MalI GATC 3 cut(s) 691, 929, 1633
MboI GATC 3 cut(s) 689, 927, 1631
MflI RGATCY 1 cut(s) 1631
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 8 cut(s) 94, 353, 582, 1278, 1526, 1720, 1777, 1828
MlyI GAGTC 7 cut(s) 113, 603, 851, 1040, 1701, 1739, 1811
Mph1103I ATGCAT 1 cut(s) 704
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 6 cut(s) 435, 585, 785, 978, 1637, 1827
MslI CAYNNNNRTG 1 cut(s) 1178
MspA1I CMGCKG 1 cut(s) 1428
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 3 cut(s) 110, 1581, 1601
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 3 cut(s) 110, 1581, 1601
MwoI GCNNNNNNNGC 6 cut(s) 245, 367, 1316, 1704, 1724, 1781
NaeI GCCGGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 1089
NdeII GATC 3 cut(s) 689, 927, 1631
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 7 cut(s) 415, 702, 706, 1045, 1136, 1471, 1511
NlaIV GGNNCC 3 cut(s) 194, 260, 1320
NmuCI GTSAC 3 cut(s) 82, 1120, 1503
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 916
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 482, 508, 1376, 1398
PfoI TCCNGGA 1 cut(s) 1599
PkrI GCNGC 7 cut(s) 187, 250, 280, 490, 1138, 1430, 1786
PleI GAGTC 7 cut(s) 112, 602, 851, 1040, 1700, 1738, 1811
PpsI GAGTC 7 cut(s) 112, 602, 851, 1040, 1700, 1738, 1811
PshBI ATTAAT 1 cut(s) 1827
Psp6I CCWGG 3 cut(s) 108, 1579, 1599
PspEI GGTNACC 1 cut(s) 1120
PspFI CCCAGC 3 cut(s) 361, 518, 793
PspGI CCWGG 3 cut(s) 108, 1579, 1599
PspN4I GGNNCC 3 cut(s) 194, 260, 1320
PspPI GGNCC 3 cut(s) 124, 1106, 1657
PsrI GAACNNNNNNTAC 2 cut(s) 717, 749
PstI CTGCAG 2 cut(s) 165, 1700
PstNI CAGNNNCTG 2 cut(s) 1328, 1401
PsuI RGATCY 1 cut(s) 1631
PvuII CAGCTG 1 cut(s) 1428
RsaI GTAC 2 cut(s) 245, 1358
RsaNI GTAC 2 cut(s) 244, 1357
RseI CAYNNNNRTG 1 cut(s) 1178
SaqAI TTAA 6 cut(s) 435, 585, 785, 978, 1637, 1827
SatI GCNGC 7 cut(s) 186, 249, 279, 489, 1137, 1429, 1785
Sau3AI GATC 3 cut(s) 689, 927, 1631
Sau96I GGNCC 3 cut(s) 124, 1106, 1657
SchI GAGTC 7 cut(s) 113, 603, 851, 1040, 1701, 1739, 1811
ScrFI CCNGG 3 cut(s) 110, 1581, 1601
SduI GDGCHC 1 cut(s) 478
SexAI ACCWGGT 1 cut(s) 1579
SfaNI GCATC 4 cut(s) 357, 628, 1470, 1676
SfcI CTRYAG 2 cut(s) 161, 1696
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 1178
SmlI CTYRAG 2 cut(s) 417, 1484
SmoI CTYRAG 2 cut(s) 417, 1484
Sse9I AATT 8 cut(s) 94, 353, 582, 1278, 1526, 1720, 1777, 1828
SsiI CCGC 8 cut(s) 71, 185, 216, 249, 279, 486, 499, 1475
SspI AATATT 1 cut(s) 1102
SspMI CTAG 1 cut(s) 1812
StyD4I CCNGG 3 cut(s) 108, 1579, 1599
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 5 cut(s) 197, 556, 568, 1216, 1314
TaiI ACGT 3 cut(s) 34, 730, 1515
TaqI TCGA 6 cut(s) 140, 210, 545, 919, 930, 1670
TasI AATT 8 cut(s) 94, 353, 582, 1278, 1526, 1720, 1777, 1828
TauI GCSGC 3 cut(s) 188, 251, 281
TfiI GAWTC 4 cut(s) 482, 508, 1376, 1398
Tru1I TTAA 6 cut(s) 435, 585, 785, 978, 1637, 1827
Tru9I TTAA 6 cut(s) 435, 585, 785, 978, 1637, 1827
TscAI CASTG 3 cut(s) 24, 727, 1317
TseFI GTSAC 3 cut(s) 82, 1120, 1503
TseI GCWGC 4 cut(s) 488, 1136, 1428, 1784
Tsp45I GTSAC 3 cut(s) 82, 1120, 1503
TspGWI ACGGA 1 cut(s) 1344
TspRI CASTG 3 cut(s) 24, 727, 1317
VpaK11BI GGWCC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 1827
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 4 cut(s) 94, 1278, 1526, 1720
XceI RCATGY 1 cut(s) 1136
XmiI GTMKAC 2 cut(s) 1032, 1337
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 1 cut(s) 1812
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.