pycom05g14990

Poly(A)-specific ribonuclease PARN-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
18553267 .. 18555681
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14990.1

Sequence Viewer

Length: 1332 bp
ATGGCGTCTCTGACTCCGTTTATACGGCGCCGTTTCCTCAGCAGCAGCACCACCACCAATGTCTCGAAGAAATGGGCCGTGAAGGAAGTGAAGAAGTCCAATTTTTCCGAGTCCCTGGTGGAGTTCAAGGACCACCTGTCCAGCTCCGACTTCGTGGCCGTCTCGCTGCAGAAAACGGGGTCATATCGTGCGCCGTGGCACCGCCCTCAGCCCTTCGACACCGCCGACACGTCGTATTGCAAGGCCAAGTACATGGGGATGCCAACTTATAGCTTTTCAGTTCAAACATCACATTTGACTTCCATGGCGGATGAAGGTTTTGATTTCAATGCCTGCATATATAATGGTATTTCATACTTGTCTAGAGCACAAGAATCTGCGGCTAAAGCTTGGATAGGGAATCCGACTACCAGCAGCTATGTAATGAGCTCTTCTTCGACCCATACTGTTGCTGATACGGTTTTTGTTGAAAGAATTAAATCGCGAGTTAAGCATTGGAAAAGTGCATGTAAAAACACAAAGAAAGATAATGCTCTGCTGAGTTCCTTGAGAAAAATTGTAATGGGAAGTGAAATTTACGGAACAAGACCCTGCATGAATCTAGATGTTTGCAGTGAACGTCAAGTGCAGCTTGCTCTGGAGATGTTGAAAGAGTTCTCTGATGAACTTGTTCCTTTAATAATCCCAGCAAGGGGTGGAGGAACTCAGGCTGTTCGTGTTGTTTTGACAAGTTCTACAGCGGACAAGGACTTGTTTGAGAGAGAGCTCCAAAACCTTGAGGAGGAACAAAACAAGAGAGTTCGTGGATTTCGAGAGTTTCTCTCACCCCTCCCGACTAATGTAGATGAGTTTATGGGTTCCTTGCACTCGGTTTTTACCCACATACTTGATGTCAGCCATCTGATGAAGAATATTGGTCCTCTAAGAAAGATGACCAATATTTCTGCAGCTATTTCGTACTTGAATAATCATTACTTCGCACCCATTGATGTGGAAATTTTGCCCCAAGAAAGTGAAGGCAACATTCATAGGCATAATGTGGTGAAGATGTGCTATTTGTTTGCAAAGCTCTGCTCCATTCTGAAAATTTCCGACAACGCTATGGTATCTAACAATGCACTGTTGGCTCCAGCCATCGAAGAGTACACAAACATTTCCAATTCGTGTTCTGACAGCCCCCAAGAATCAACCAATGAGGATATCAGAGTCTGGACAAAGAATATGAGAAAGGTCAGCTGTGATCGATCGGTATTTGTATGGGGATTCAGGAGTGGGATGACTGCAGGGATCGATCAAGAGCTTGTTGTGCAAGTCACATGCCGTCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

49.8

Weight (kDa)

8.56

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 30 - 84 1.5e-06 CAF1 family ribonuclease
CAF1 PF04857 86 - 271 3.5e-11 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 27, 198
AccII CGCG 1 cut(s) 484
AciI CCGC 5 cut(s) 202, 222, 308, 380, 740
AclWI GGATC 1 cut(s) 1295
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 3 cut(s) 573, 996, 1086
AcyI GRCGYC 2 cut(s) 5, 28
AfaI GTAC 3 cut(s) 251, 959, 1145
AfiI CCNNNNNNNGG 3 cut(s) 691, 692, 781
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 6 cut(s) 127, 284, 328, 470, 649, 964
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 114
Alw21I GWGCWC 3 cut(s) 370, 431, 768
Alw26I GTCTC 3 cut(s) 12, 67, 166
AlwI GGATC 1 cut(s) 1295
AlwNI CAGNNNCTG 1 cut(s) 1209
AoxI GGCC 3 cut(s) 75, 156, 243
ApeKI GCWGC 6 cut(s) 42, 45, 166, 414, 628, 947
ApoI RAATTY 3 cut(s) 573, 996, 1086
Asp700I GAANNNNTTC 2 cut(s) 653, 669
AspLEI GCGC 2 cut(s) 30, 193
AspS9I GGNCC 3 cut(s) 75, 130, 917
AsuHPI GGTGA 2 cut(s) 816, 1054
AvaII GGWCC 2 cut(s) 130, 917
BanI GGYRCC 2 cut(s) 27, 198
BanII GRGCYC 2 cut(s) 431, 768
BbsI GAAGAC 1 cut(s) 1316
Bbv12I GWGCWC 3 cut(s) 370, 431, 768
BbvCI CCTCAGC 2 cut(s) 38, 207
BbvI GCAGC 6 cut(s) 54, 57, 153, 426, 640, 959
BccI CCATC 2 cut(s) 906, 1142
BceAI ACGGC 6 cut(s) 15, 41, 62, 143, 178, 1305
BcgI CGANNNNNNTGC 2 cut(s) 936, 970
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 12, 67, 166
BfaI CTAG 2 cut(s) 363, 602
BfmI CTRYAG 4 cut(s) 167, 735, 945, 1281
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 7 cut(s) 43, 46, 167, 381, 415, 629, 948
BlsI GCNGC 7 cut(s) 44, 47, 168, 382, 416, 630, 949
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 130, 917
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 75, 130, 917
BmiI GGNNCC 4 cut(s) 29, 200, 859, 1128
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 1316
BplI GAGNNNNNCTC 4 cut(s) 804, 836, 806, 838
BpmI CTGGAG 2 cut(s) 659, 1113
Bpu10I CCTNAGC 2 cut(s) 38, 207
BpuEI CTTGAG 2 cut(s) 568, 797
Bsa29I ATCGAT 2 cut(s) 1243, 1290
BsaHI GRCGYC 2 cut(s) 5, 28
BsaJI CCNNGG 3 cut(s) 114, 194, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 691, 692, 781
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 2 cut(s) 1243, 1290
BseDI CCNNGG 3 cut(s) 114, 194, 303
BseGI GGATG 3 cut(s) 264, 316, 1281
BseLI CCNNNNNNNGG 3 cut(s) 691, 692, 781
BseMII CTCAG 4 cut(s) 52, 221, 530, 719
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 6 cut(s) 54, 57, 153, 426, 640, 959
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 647
Bsh1236I CGCG 1 cut(s) 484
Bsh1285I CGRYCG 1 cut(s) 1247
BshFI GGCC 3 cut(s) 77, 158, 245
BshNI GGYRCC 2 cut(s) 27, 198
BshVI ATCGAT 2 cut(s) 1243, 1290
BsiEI CGRYCG 1 cut(s) 1247
BsiHKAI GWGCWC 3 cut(s) 370, 431, 768
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 691, 692, 781
BsmAI GTCTC 3 cut(s) 12, 67, 166
BsmBI CGTCTC 2 cut(s) 12, 166
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 77, 158, 245
Bsp1286I GDGCHC 3 cut(s) 370, 431, 768
Bsp143I GATC 4 cut(s) 1240, 1244, 1287, 1291
Bsp19I CCATGG 1 cut(s) 303
Bsp68I TCGCGA 1 cut(s) 484
BspACI CCGC 5 cut(s) 202, 222, 308, 380, 740
BspANI GGCC 3 cut(s) 77, 158, 245
BspCNI CTCAG 4 cut(s) 51, 220, 531, 718
BspDI ATCGAT 2 cut(s) 1243, 1290
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 29, 200, 859, 1128
BspMAI CTGCAG 3 cut(s) 171, 949, 1285
BspPI GGATC 1 cut(s) 1295
BspQI GCTCTTC 1 cut(s) 436
BspT107I GGYRCC 2 cut(s) 27, 198
BssECI CCNNGG 3 cut(s) 114, 194, 303
BssMI GATC 4 cut(s) 1240, 1244, 1287, 1291
BssNI GRCGYC 2 cut(s) 5, 28
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 448, 460, 1122
Bst6I CTCTTC 2 cut(s) 436, 1134
BstACI GRCGYC 2 cut(s) 5, 28
BstC8I GCNNGC 2 cut(s) 334, 633
BstDEI CTNAG 5 cut(s) 38, 207, 539, 705, 923
BstDSI CCRYGG 2 cut(s) 194, 303
BstENI CCTNNNNNAGG 1 cut(s) 779
BstF5I GGATG 3 cut(s) 264, 316, 1281
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 193
BstKTI GATC 4 cut(s) 1243, 1247, 1290, 1294
BstMAI GTCTC 3 cut(s) 12, 67, 166
BstMBI GATC 4 cut(s) 1240, 1244, 1287, 1291
BstMCI CGRYCG 1 cut(s) 1247
BstMWI GCNNNNNNNGC 4 cut(s) 386, 490, 1124, 1306
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 510, 1320
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 4 cut(s) 167, 735, 945, 1281
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 6 cut(s) 54, 57, 153, 426, 640, 959
BstV2I GAAGAC 1 cut(s) 1316
BstXI CCANNNNNNTGG 2 cut(s) 253, 991
Bsu15I ATCGAT 2 cut(s) 1243, 1290
BsuRI GGCC 3 cut(s) 77, 158, 245
BsuTUI ATCGAT 2 cut(s) 1243, 1290
BtgI CCRYGG 2 cut(s) 194, 303
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 264, 316, 1281
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 619, 1118
BtuMI TCGCGA 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 334, 633
CaiI CAGNNNCTG 1 cut(s) 1209
CfoI GCGC 2 cut(s) 30, 193
Cfr13I GGNCC 3 cut(s) 75, 130, 917
ClaI ATCGAT 2 cut(s) 1243, 1290
Csp6I GTAC 3 cut(s) 250, 958, 1144
CviAII CATG 5 cut(s) 253, 304, 507, 595, 1317
CviQI GTAC 3 cut(s) 250, 958, 1144
DdeI CTNAG 5 cut(s) 38, 207, 539, 705, 923
DinI GGCGCC 1 cut(s) 29
DpnI GATC 4 cut(s) 1242, 1246, 1289, 1293
DpnII GATC 4 cut(s) 1240, 1244, 1287, 1291
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 436, 1134
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 2 cut(s) 436, 1134
EciI GGCGGA 1 cut(s) 323
Ecl136II GAGCTC 2 cut(s) 429, 766
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 431, 768
Eco32I GATATC 1 cut(s) 1201
Eco47I GGWCC 2 cut(s) 130, 917
Eco53kI GAGCTC 2 cut(s) 429, 766
EcoICRI GAGCTC 2 cut(s) 429, 766
EcoNI CCTNNNNNAGG 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 1201
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 2 cut(s) 431, 768
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 2 cut(s) 12, 166
FaeI CATG 5 cut(s) 256, 307, 510, 598, 1320
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 1 cut(s) 97
FatI CATG 5 cut(s) 252, 303, 506, 594, 1316
Fnu4HI GCNGC 7 cut(s) 43, 46, 167, 381, 415, 629, 948
FokI GGATG 3 cut(s) 271, 323, 1288
FriOI GRGCYC 2 cut(s) 431, 768
Fsp4HI GCNGC 7 cut(s) 43, 46, 167, 381, 415, 629, 948
FspBI CTAG 2 cut(s) 363, 602
GlaI GCGC 2 cut(s) 29, 192
GluI GCNGC 7 cut(s) 43, 46, 167, 381, 415, 629, 948
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 2 cut(s) 659, 1113
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 3 cut(s) 77, 158, 245
HhaI GCGC 2 cut(s) 30, 193
Hin1I GRCGYC 2 cut(s) 5, 28
Hin1II CATG 5 cut(s) 256, 307, 510, 598, 1320
Hin6I GCGC 2 cut(s) 28, 191
HinP1I GCGC 2 cut(s) 28, 191
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 8 cut(s) 13, 110, 374, 400, 598, 1184, 1206, 1263
HphI GGTGA 2 cut(s) 816, 1054
Hpy166II GTNNAC 2 cut(s) 617, 1146
Hpy8I GTNNAC 2 cut(s) 617, 1146
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 4 cut(s) 76, 223, 308, 1010
HpyCH4III ACNGT 3 cut(s) 448, 460, 1122
HpyCH4IV ACGT 2 cut(s) 230, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 490, 1124, 1306
HpyF3I CTNAG 5 cut(s) 38, 207, 539, 705, 923
HpySE526I ACGT 2 cut(s) 230, 619
Hsp92I GRCGYC 2 cut(s) 5, 28
Hsp92II CATG 5 cut(s) 256, 307, 510, 598, 1320
HspAI GCGC 2 cut(s) 28, 191
KasI GGCGCC 1 cut(s) 27
Kzo9I GATC 4 cut(s) 1240, 1244, 1287, 1291
LguI GCTCTTC 1 cut(s) 436
LmnI GCTCC 4 cut(s) 149, 771, 1079, 1132
Lsp1109I GCAGC 6 cut(s) 54, 57, 153, 426, 640, 959
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 363, 602
MaeII ACGT 2 cut(s) 230, 619
MaeIII GTNAC 1 cut(s) 1312
MalI GATC 4 cut(s) 1242, 1246, 1289, 1293
MboI GATC 4 cut(s) 1240, 1244, 1287, 1291
MboII GAAGA 8 cut(s) 79, 103, 423, 426, 919, 1057, 1151, 1316
MhlI GDGCHC 3 cut(s) 370, 431, 768
MluCI AATT 7 cut(s) 100, 474, 555, 573, 996, 1086, 1159
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 3 cut(s) 7, 119, 1215
MmeI TCCRAC 3 cut(s) 171, 428, 1116
MnlI CCTC 8 cut(s) 47, 216, 692, 772, 775, 839, 930, 1189
MroXI GAANNNNTTC 2 cut(s) 653, 669
MseI TTAA 3 cut(s) 477, 489, 677
MslI CAYNNNNRTG 2 cut(s) 257, 989
MspA1I CMGCKG 2 cut(s) 740, 1236
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 4 cut(s) 386, 490, 1124, 1306
NarI GGCGCC 1 cut(s) 28
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 1240, 1244, 1287, 1291
NlaIII CATG 5 cut(s) 256, 307, 510, 598, 1320
NlaIV GGNNCC 4 cut(s) 29, 200, 859, 1128
NmuCI GTSAC 1 cut(s) 1312
NruI TCGCGA 1 cut(s) 484
NspI RCATGY 2 cut(s) 510, 1320
PciSI GCTCTTC 1 cut(s) 436
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 808
PdmI GAANNNNTTC 2 cut(s) 653, 669
PfeI GAWTC 5 cut(s) 374, 400, 598, 1184, 1263
PkrI GCNGC 7 cut(s) 44, 47, 168, 382, 416, 630, 949
Ple19I CGATCG 1 cut(s) 1247
PleI GAGTC 3 cut(s) 7, 118, 1214
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 3 cut(s) 7, 118, 1214
Psp124BI GAGCTC 2 cut(s) 431, 768
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 29, 200, 859, 1128
PspPI GGNCC 3 cut(s) 75, 130, 917
PstI CTGCAG 3 cut(s) 171, 949, 1285
PstNI CAGNNNCTG 1 cut(s) 1209
PvuI CGATCG 1 cut(s) 1247
PvuII CAGCTG 1 cut(s) 1236
RruI TCGCGA 1 cut(s) 484
RsaI GTAC 3 cut(s) 251, 959, 1145
RsaNI GTAC 3 cut(s) 250, 958, 1144
RseI CAYNNNNRTG 2 cut(s) 257, 989
SacI GAGCTC 2 cut(s) 431, 768
SapI GCTCTTC 1 cut(s) 436
SaqAI TTAA 3 cut(s) 477, 489, 677
SatI GCNGC 7 cut(s) 43, 46, 167, 381, 415, 629, 948
Sau3AI GATC 4 cut(s) 1240, 1244, 1287, 1291
Sau96I GGNCC 3 cut(s) 75, 130, 917
SchI GAGTC 3 cut(s) 7, 119, 1215
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 370, 431, 768
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 4 cut(s) 167, 735, 945, 1281
SfoI GGCGCC 1 cut(s) 29
SinI GGWCC 2 cut(s) 130, 917
SmiMI CAYNNNNRTG 2 cut(s) 257, 989
SmlI CTYRAG 2 cut(s) 547, 776
SmoI CTYRAG 2 cut(s) 547, 776
Sse9I AATT 7 cut(s) 100, 474, 555, 573, 996, 1086, 1159
SsiI CCGC 5 cut(s) 202, 222, 308, 380, 740
SspDI GGCGCC 1 cut(s) 27
SspI AATATT 2 cut(s) 913, 940
SspMI CTAG 2 cut(s) 363, 602
SstI GAGCTC 2 cut(s) 431, 768
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 448, 460, 1122
TaiI ACGT 2 cut(s) 233, 622
TaqI TCGA 7 cut(s) 65, 216, 437, 811, 1137, 1243, 1290
TasI AATT 7 cut(s) 100, 474, 555, 573, 996, 1086, 1159
TatI WGTACW 2 cut(s) 249, 1143
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 5 cut(s) 374, 400, 598, 1184, 1263
Tru1I TTAA 3 cut(s) 477, 489, 677
Tru9I TTAA 3 cut(s) 477, 489, 677
TscAI CASTG 2 cut(s) 619, 1125
TseFI GTSAC 1 cut(s) 1312
TseI GCWGC 6 cut(s) 42, 45, 166, 414, 628, 947
Tsp45I GTSAC 1 cut(s) 1312
TspDTI ATGAA 6 cut(s) 327, 342, 611, 678, 920, 1016
TspGWI ACGGA 2 cut(s) 6, 594
TspRI CASTG 2 cut(s) 619, 1125
VpaK11BI GGWCC 2 cut(s) 130, 917
XagI CCTNNNNNAGG 1 cut(s) 779
XapI RAATTY 3 cut(s) 573, 996, 1086
XbaI TCTAGA 2 cut(s) 362, 601
XceI RCATGY 2 cut(s) 510, 1320
XmnI GAANNNNTTC 2 cut(s) 653, 669
XspI CTAG 2 cut(s) 363, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.