Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003070.1

Orthogroup ID

OG0009492

Physical Location & Seq

Genomic Coordinates Forward (+)

53600 .. 54544

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003070.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggcttcagcttcgacctttctctcacacccaaaccctcacacaaacgacgccgtattctcttcttcacgaagtcggttccaatccttcagctgcttcgcctctcgatcaaacttctatggctccaaattcacatccaaaccgatttccttgtccacctccggaacccgacccgtccgacccaaacccgctagttcttcggcctcggaaccgcaccaaacgttcgatgttttgattatcggagctggaataatcgggttgaccatagcccggcagttcctgatcgggtcggacctatccgttgccgtgattgacaaggctgtcccctgctctggtgccaccggcgccggtaattttttttttttttcctccttagaaaaagagaatgctaagctatctaacaatcacctattagctccagcccttgacgagtacactaacatatccaatcccttctccgacattccccaggaatcaatcaatgaggatatcagaatctggagaaataatatgagaaaaatcagctgtgataatttggtattcttatggggatttagaagtgggttgaccgctggaatgctgaagagcatgttgcacaagtcacatgatgttttctctgaagactttgatgttcggttcgtagataagagttgtgccattgttgttttctggcaacctggtttatctggaactttccttgatgttgtgagtaacgaagccatcatctgtggatccttgagggagatggtctcagagggcctaagagcaacgagttatagtacttacaagagagtctgtaagttgggtttatgggaggcagatttagcagagtccttggacaaagctttagaagatccagactacagtatggaagctgattcaacaacaaacggcagagaaattctttggtctactgactctatgattaattttgatgacctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0043167 GO:0043169

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

314

Amino Acids

34.53

Weight (kDa)

5.29

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25430 AT3G25430
fragaria_vesca	FvH4_2g17670
malus_domestica	MD05G1157500.v1.1 MD05G1157600.v1.1 MD05G1157900.v1.1 MD10G1150600.v1.1
prunus_persica	Prupe.8G189300_v2.0.a1 Prupe.8G189300_v2.0.a1
pyrus_communis	pycom05g14970 pycom05g14990 pycom10g12970
rosa_chinensis	RchiOBHm_Chr6g0282651
rosa_laevigata	RLG00000012877
rosa_multiflora	Rmu_sc0003070.1_g000010
rosa_roxburghii	Rroxscaffold_7G00186140
rosa_rugosa	Rorug06G0148300
rosa_samantha	Rh6AG261700 Rh6BG264800 Rh6CG263900 Rh6DG256100
rosa_wichuraiana	Rw6G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB1I	GGYRCC	2 cut(s)	335, 344
AccI	GTMKAC	1 cut(s)	911
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	189, 212, 570
AclI	AACGTT	1 cut(s)	221
AclWI	GGATC	3 cut(s)	726, 739, 848
AcsI	RAATTY	2 cut(s)	128, 900
AcuI	CTGAAG	3 cut(s)	73, 602, 639
AcyI	GRCGYC	2 cut(s)	51, 345
AfaI	GTAC	2 cut(s)	434, 781
AfiI	CCNNNNNNNGG	2 cut(s)	270, 332
AgsI	TTSAA	1 cut(s)	882
AjnI	CCWGG	2 cut(s)	468, 676
AluBI	AGCT	8 cut(s)	11, 93, 245, 394, 416, 525, 845, 875
AluI	AGCT	8 cut(s)	11, 93, 245, 394, 416, 525, 845, 875
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	3 cut(s)	726, 739, 848
AlwNI	CAGNNNCTG	2 cut(s)	280, 498
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	201, 757
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	2 cut(s)	128, 900
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	292, 757
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	731
BanI	GGYRCC	2 cut(s)	335, 344
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	2 cut(s)	728, 739
BceAI	ACGGC	3 cut(s)	38, 290, 907
BciT130I	CCWGG	2 cut(s)	470, 678
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	862
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	3 cut(s)	271, 470, 678
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	292, 757
BmiI	GGNNCC	7 cut(s)	80, 124, 166, 210, 337, 346, 733
BmrFI	CCNGG	3 cut(s)	271, 470, 678
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpmI	CTGGAG	2 cut(s)	402, 520
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	757
BpuMI	CCSGG	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	51, 345
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	3 cut(s)	204, 468, 834
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 332
Bse118I	RCCGGY	2 cut(s)	341, 347
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	470, 678
BseDI	CCNNGG	3 cut(s)	204, 468, 834
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	270, 332
BseMII	CTCAG	1 cut(s)	765
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	2 cut(s)	203, 759
BshNI	GGYRCC	2 cut(s)	335, 344
BsiSI	CCGG	4 cut(s)	162, 271, 342, 348
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	270, 332
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	2 cut(s)	391, 582
BsnI	GGCC	2 cut(s)	203, 759
Bso31I	GGTCTC	1 cut(s)	754
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	107, 282, 731, 853
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	189, 212, 570
BspANI	GGCC	2 cut(s)	203, 759
BspCNI	CTCAG	1 cut(s)	764
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	7 cut(s)	80, 124, 166, 210, 337, 346, 733
BspPI	GGATC	3 cut(s)	726, 739, 848
BspQI	GCTCTTC	1 cut(s)	578
BspT107I	GGYRCC	2 cut(s)	335, 344
BspTNI	GGTCTC	1 cut(s)	754
BsrFI	RCCGGY	2 cut(s)	341, 347
BssAI	RCCGGY	2 cut(s)	341, 347
BssECI	CCNNGG	3 cut(s)	204, 468, 834
BssMI	GATC	4 cut(s)	107, 282, 731, 853
BssNI	GRCGYC	2 cut(s)	51, 345
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	470, 678
Bst4CI	ACNGT	1 cut(s)	866
Bst6I	CTCTTC	2 cut(s)	67, 578
BstACI	GRCGYC	2 cut(s)	51, 345
BstDEI	CTNAG	4 cut(s)	373, 390, 751, 761
BstF5I	GGATG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	110, 285, 734, 856
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	4 cut(s)	107, 282, 731, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 824
BstNI	CCWGG	2 cut(s)	470, 678
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	269, 468, 676
BstSFI	CTRYAG	1 cut(s)	862
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	2 cut(s)	731, 853
BstYI	RGATCY	2 cut(s)	731, 853
BsuRI	GGCC	2 cut(s)	203, 759
BtsCI	GGATG	1 cut(s)	134
CaiI	CAGNNNCTG	2 cut(s)	280, 498
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	2 cut(s)	341, 347
Cfr13I	GGNCC	2 cut(s)	292, 757
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	433, 780
CviAII	CATG	2 cut(s)	589, 605
CviQI	GTAC	2 cut(s)	433, 780
DdeI	CTNAG	4 cut(s)	373, 390, 751, 761
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	4 cut(s)	109, 284, 733, 855
DpnII	GATC	4 cut(s)	107, 282, 731, 853
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	67, 578
EarI	CTCTTC	2 cut(s)	67, 578
Eco130I	CCWWGG	1 cut(s)	834
Eco31I	GGTCTC	1 cut(s)	754
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	73, 602, 639
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	468, 676
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	834
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	2 cut(s)	592, 608
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	588, 604
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	2 cut(s)	402, 520
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	203, 759
HapII	CCGG	4 cut(s)	162, 271, 342, 348
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	2 cut(s)	51, 345
Hin1II	CATG	2 cut(s)	592, 608
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	2 cut(s)	261, 567
HindII	GTYRAC	2 cut(s)	261, 567
HindIII	AAGCTT	1 cut(s)	843
HinfI	GANTC	6 cut(s)	473, 495, 792, 830, 878, 917
HpaII	CCGG	4 cut(s)	162, 271, 342, 348
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	5 cut(s)	156, 261, 435, 567, 912
Hpy188I	TCNGA	8 cut(s)	179, 208, 242, 292, 460, 494, 619, 754
Hpy188III	TCNNGA	7 cut(s)	69, 105, 162, 280, 499, 687, 857
Hpy8I	GTNNAC	5 cut(s)	156, 261, 435, 567, 912
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	97, 463
HpyCH4III	ACNGT	1 cut(s)	866
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 824
HpyF3I	CTNAG	4 cut(s)	373, 390, 751, 761
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	2 cut(s)	51, 345
Hsp92II	CATG	2 cut(s)	592, 608
HspAI	GCGC	1 cut(s)	345
KasI	GGCGCC	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	107, 282, 731, 853
LguI	GCTCTTC	1 cut(s)	578
LmnI	GCTCC	3 cut(s)	128, 242, 421
Lsp1109I	GCAGC	1 cut(s)	80
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	600, 710
MalI	GATC	4 cut(s)	109, 284, 733, 855
MboI	GATC	4 cut(s)	107, 282, 731, 853
MboII	GAAGA	6 cut(s)	54, 57, 189, 595, 632, 863
MflI	RGATCY	2 cut(s)	731, 853
MluCI	AATT	5 cut(s)	128, 352, 532, 900, 928
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	3 cut(s)	801, 839, 911
MmeI	TCCRAC	3 cut(s)	202, 270, 483
MnlI	CCTC	9 cut(s)	48, 112, 169, 214, 379, 478, 732, 748, 808
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	1 cut(s)	927
MspA1I	CMGCKG	3 cut(s)	93, 525, 572
MspI	CCGG	4 cut(s)	162, 271, 342, 348
MspR9I	CCNGG	3 cut(s)	271, 470, 678
Mva1269I	GAATGC	2 cut(s)	391, 582
MvaI	CCWGG	2 cut(s)	470, 678
MwoI	GCNNNNNNNGC	2 cut(s)	344, 824
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	107, 282, 731, 853
NlaIII	CATG	2 cut(s)	592, 608
NlaIV	GGNNCC	7 cut(s)	80, 124, 166, 210, 337, 346, 733
NmuCI	GTSAC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	592
PciSI	GCTCTTC	1 cut(s)	578
PctI	GAATGC	2 cut(s)	391, 582
PfeI	GAWTC	3 cut(s)	473, 495, 878
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	3 cut(s)	800, 838, 911
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	3 cut(s)	800, 838, 911
PshBI	ATTAAT	1 cut(s)	927
Psp1406I	AACGTT	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	468, 676
PspGI	CCWGG	2 cut(s)	468, 676
PspN4I	GGNNCC	7 cut(s)	80, 124, 166, 210, 337, 346, 733
PspPI	GGNCC	2 cut(s)	292, 757
PstNI	CAGNNNCTG	2 cut(s)	280, 498
PsuI	RGATCY	2 cut(s)	731, 853
PvuII	CAGCTG	2 cut(s)	93, 525
RsaI	GTAC	2 cut(s)	434, 781
RsaNI	GTAC	2 cut(s)	433, 780
SapI	GCTCTTC	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	4 cut(s)	107, 282, 731, 853
Sau96I	GGNCC	2 cut(s)	292, 757
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	3 cut(s)	801, 839, 911
ScrFI	CCNGG	3 cut(s)	271, 470, 678
SexAI	ACCWGGT	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	862
SfoI	GGCGCC	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	5 cut(s)	128, 352, 532, 900, 928
SsiI	CCGC	3 cut(s)	189, 212, 570
SspDI	GGCGCC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	269, 468, 676
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	866
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	14, 106, 225
TasI	AATT	5 cut(s)	128, 352, 532, 900, 928
TatI	WGTACW	2 cut(s)	432, 779
TfiI	GAWTC	3 cut(s)	473, 495, 878
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	600
TspGWI	ACGGA	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	128, 900
XceI	RCATGY	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	911
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.