Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009492

Physical Location & Seq

Genomic Coordinates Reverse (-)

18546782 .. 18547437

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTTGGGTTGTCATCTATAGAAAGTGAAGGCAACATTAATGTGGTGAAGATGCTCAATTTGTTTGCAAAGCTCTGCTCCATTCTGAAAATTTCCGACAACACTATGGTATCTAACAATGCACTGTTGGCTCCATCCATCGAAGAGTACACAAACATTTCCAATCCGTGTTCTGACGGGATGATCAAGAGCTTGTTATGCAAGCCACATGTTGTCTTCTCTGAAGAATTTGATGTTCGGTTAGTGGACAAGGGCTGTGCCATTGTTGTTTTCTGGCGACGTGGTTTATCTGAAACTTTTTTGGATGCCATAAGCCGTGAAGAGATTTGTGACTCTTTAATGGAGATTGCTTCGGAGGGCATAAGAGCATCAAGTTACGAGACTTACAAGAGAGTCTGCAGGTTGGATTTATGGAAGGCAGATTTAGCGGAGTCCTTAGACAAAGCCTTGGAAGACTCGGACTACCTTACGGAAGTTAATTCAGCAACAAATTCTAAAGAAATTTATTGGTCTAGCAACTCAGCGATAAATTTTGATGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0043167 GO:0043169

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

182

Amino Acids

20.26

Weight (kDa)

4.5

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25430 AT3G25430
fragaria_vesca	FvH4_2g17670
malus_domestica	MD05G1157500.v1.1 MD05G1157600.v1.1 MD05G1157900.v1.1 MD10G1150600.v1.1
prunus_persica	Prupe.8G189300_v2.0.a1 Prupe.8G189300_v2.0.a1
pyrus_communis	pycom05g14970 pycom05g14990 pycom10g12970
rosa_chinensis	RchiOBHm_Chr6g0282651
rosa_laevigata	RLG00000012877
rosa_multiflora	Rmu_sc0003070.1_g000010
rosa_roxburghii	Rroxscaffold_7G00186140
rosa_rugosa	Rorug06G0148300
rosa_samantha	Rh6AG261700 Rh6BG264800 Rh6CG263900 Rh6DG256100
rosa_wichuraiana	Rw6G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AciI	CCGC	1 cut(s)	428
AcsI	RAATTY	5 cut(s)	90, 227, 490, 501, 529
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	281
AluBI	AGCT	2 cut(s)	73, 192
AluI	AGCT	2 cut(s)	73, 192
Alw26I	GTCTC	1 cut(s)	374
ApoI	RAATTY	5 cut(s)	90, 227, 490, 501, 529
AseI	ATTAAT	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BbsI	GAAGAC	2 cut(s)	208, 459
BccI	CCATC	2 cut(s)	142, 146
BceAI	ACGGC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	18, 397
BfuAI	ACCTGC	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	3 cut(s)	42, 295, 377
BpiI	GAAGAC	2 cut(s)	208, 459
BsaJI	CCNNGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	134, 186, 310
BseMII	CTCAG	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	401
BspMI	ACCTGC	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	138, 315
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	436, 520
BstF5I	GGATG	3 cut(s)	134, 186, 310
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 198, 425
BstNSI	RCATGY	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	18, 397
BstV2I	GAAGAC	2 cut(s)	208, 459
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	3 cut(s)	134, 186, 310
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	7 cut(s)	73, 131, 192, 205, 255, 315, 446
CviKI_1	RGCY	7 cut(s)	73, 131, 192, 205, 255, 315, 446
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	436, 520
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	138, 315
EarI	CTCTTC	2 cut(s)	138, 315
Eco130I	CCWWGG	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	212
FaiI	YATR	7 cut(s)	20, 107, 199, 210, 311, 362, 412
FatI	CATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	183
FokI	GGATG	3 cut(s)	121, 193, 317
FspBI	CTAG	1 cut(s)	513
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	4 cut(s)	332, 393, 431, 455
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	150, 247
Hpy188I	TCNGA	7 cut(s)	87, 97, 175, 223, 292, 355, 460
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	2 cut(s)	150, 247
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	23, 409
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	68, 122, 201, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 198, 425
HpyF3I	CTNAG	2 cut(s)	436, 520
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	83, 136
LpnPI	CCDG	2 cut(s)	259, 385
LweI	GCATC	3 cut(s)	42, 295, 377
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	329, 374
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	6 cut(s)	61, 155, 208, 236, 332, 464
MluCI	AATT	7 cut(s)	58, 90, 227, 478, 490, 501, 529
MlyI	GAGTC	4 cut(s)	326, 402, 440, 449
MmeI	TCCRAC	2 cut(s)	120, 384
MnlI	CCTC	1 cut(s)	349
MseI	TTAA	3 cut(s)	39, 338, 477
MslI	CAYNNNNRTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	128, 198, 425
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	212
PciI	ACATGT	1 cut(s)	208
PleI	GAGTC	4 cut(s)	326, 401, 439, 449
PpsI	GAGTC	4 cut(s)	326, 401, 439, 449
PscI	ACATGT	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	39, 338, 477
Sau3AI	GATC	1 cut(s)	183
SchI	GAGTC	4 cut(s)	326, 402, 440, 449
SetI	ASST	5 cut(s)	75, 194, 283, 404, 468
SfaNI	GCATC	3 cut(s)	42, 295, 377
SfcI	CTRYAG	2 cut(s)	18, 397
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	7 cut(s)	58, 90, 227, 478, 490, 501, 529
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	58, 90, 227, 478, 490, 501, 529
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	39, 338, 477
Tru9I	TTAA	3 cut(s)	39, 338, 477
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspGWI	ACGGA	2 cut(s)	156, 485
TspRI	CASTG	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	5 cut(s)	90, 227, 490, 501, 529
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.