Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Forward (+)

29455190 .. 29459892

Gene Structure 4703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1196500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAACCCGATTCACAAGAAAATCCCGGTTCTCATTCACAATGGCAAACCGGTCTCTGAGTCTCTCATTGCGGTTCAATACATTGATGAAGTTTGGAAGGATGAAGCTCCACTGTTGCCTTCTGATGCTTACCTTAGAGCCCAAGCTAGGTTCTGGGTTGACTTCGTTGACAATAAGCCGGGTGATTTTGGGTCTATGTATTGTCAATTGTCATTGATTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

76

Amino Acids

8.53

Weight (kDa)

5.47

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 30	2.5e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	77, 222
AluBI	AGCT	2 cut(s)	107, 146
AluI	AGCT	2 cut(s)	107, 146
Alw26I	GTCTC	2 cut(s)	58, 66
AsiGI	ACCGGT	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	26, 180
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	26, 180
BcoDI	GTCTC	2 cut(s)	58, 66
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	26, 180
BmrFI	CCNGG	2 cut(s)	26, 180
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	2 cut(s)	26, 180
BsaI	GGTCTC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	48
BshTI	ACCGGT	1 cut(s)	49
BsiSI	CCGG	3 cut(s)	26, 50, 179
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	58, 66
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	57, 134
BstF5I	GGATG	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	58, 66
BstSCI	CCNGG	2 cut(s)	24, 178
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	49
CviJI	RGCY	4 cut(s)	107, 140, 146, 178
CviKI_1	RGCY	4 cut(s)	107, 140, 146, 178
DdeI	CTNAG	2 cut(s)	57, 134
Eco24I	GRGCYC	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	142
FaiI	YATR	1 cut(s)	197
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	147
HapII	CCGG	3 cut(s)	26, 50, 179
HincII	GTYRAC	2 cut(s)	160, 169
HindII	GTYRAC	2 cut(s)	160, 169
HinfI	GANTC	2 cut(s)	10, 59
HpaII	CCGG	3 cut(s)	26, 50, 179
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	160, 169
Hpy188I	TCNGA	2 cut(s)	58, 124
Hpy8I	GTNNAC	2 cut(s)	160, 169
HpyAV	CCTTC	2 cut(s)	91, 129
HpyCH4III	ACNGT	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	57, 134
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	4 cut(s)	39, 63, 139, 192
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	206, 222
MlyI	GAGTC	1 cut(s)	68
MspI	CCGG	3 cut(s)	26, 50, 179
MspR9I	CCNGG	2 cut(s)	26, 180
MunI	CAATTG	1 cut(s)	206
NciI	CCSGG	2 cut(s)	26, 180
PfeI	GAWTC	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	49
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	26, 180
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	109, 135, 148, 152
SfaNI	GCATC	1 cut(s)	115
Sse9I	AATT	2 cut(s)	206, 222
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	24, 178
TaaI	ACNGT	1 cut(s)	114
TasI	AATT	2 cut(s)	206, 222
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	17, 102, 117
TspRI	CASTG	1 cut(s)	117
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.