Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Forward (+)

92457146 .. 92460774

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG537600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGAGGTGCATAGTTTTAAGATTCCTTGGGGCCCCTCTTCAGTACATTGACGAGGTCTGGACTGTTAAGCCACTCTTGCCCTCCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCCGACTTTGTGGACAAGAAGATACATGGTTTGGGGAGGAAGACATGGACAACCAAGGGAGACGAACAGGAGGCAGCAAAGAAGGAATACATTGACTGCATTAAGTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCGAGACCCTCGGATTTGTTTTGCTTCTACAGTTGTATGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

104

Amino Acids

11.98

Weight (kDa)

5.39

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	83, 96
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	117, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	174, 263
AlwI	GGATC	2 cut(s)	83, 96
AoxI	GGCC	2 cut(s)	33, 120
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	33, 34, 120
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	174, 263
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	2 cut(s)	195, 265
BlsI	GCNGC	2 cut(s)	196, 266
BmgT120I	GGNCC	3 cut(s)	33, 34, 120
BmiI	GGNNCC	3 cut(s)	34, 35, 36
BpiI	GAAGAC	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	28, 174, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 260
BseDI	CCNNGG	3 cut(s)	28, 174, 274
BseLI	CCNNNNNNNGG	2 cut(s)	117, 260
BseMII	CTCAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	2 cut(s)	35, 122
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	117, 260
BsmAI	GTCTC	2 cut(s)	174, 263
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	35, 122
Bso31I	GGTCTC	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	88, 101
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	35, 122
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	34, 35, 36
BspPI	GGATC	2 cut(s)	83, 96
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	28, 174, 274
BssMI	GATC	2 cut(s)	88, 101
BssT1I	CCWWGG	2 cut(s)	28, 174
Bst4CI	ACNGT	2 cut(s)	67, 297
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	91, 104
BstMAI	GTCTC	2 cut(s)	174, 263
BstMBI	GATC	2 cut(s)	88, 101
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	35, 122
Cfr13I	GGNCC	3 cut(s)	33, 34, 120
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	146, 165
CviJI	RGCY	6 cut(s)	35, 73, 110, 122, 241, 253
CviKI_1	RGCY	6 cut(s)	35, 73, 110, 122, 241, 253
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	2 cut(s)	90, 103
DpnII	GATC	2 cut(s)	88, 101
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	28, 174
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	33, 34
EcoT14I	CCWWGG	2 cut(s)	28, 174
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	28, 174
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	149, 168
FaiI	YATR	4 cut(s)	14, 147, 166, 303
FalI	AAGNNNNNCTT	6 cut(s)	62, 94, 225, 257, 242, 274
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	145, 164
Fnu4HI	GCNGC	2 cut(s)	195, 265
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	195, 265
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	195, 265
HaeIII	GGCC	2 cut(s)	35, 122
Hin1II	CATG	2 cut(s)	149, 168
HinfI	GANTC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	88, 101, 278
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	196, 264
HpyCH4III	ACNGT	2 cut(s)	67, 297
HpyCH4V	TGCA	2 cut(s)	12, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	149, 168
Kzo9I	GATC	2 cut(s)	88, 101
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	46, 103, 173
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	90, 103
MboI	GATC	2 cut(s)	88, 101
MboII	GAAGA	3 cut(s)	32, 151, 172
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	48, 49, 94, 107, 150, 184, 284
MseI	TTAA	3 cut(s)	20, 69, 222
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	2 cut(s)	88, 101
NlaIII	CATG	2 cut(s)	149, 168
NlaIV	GGNNCC	3 cut(s)	34, 35, 36
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	196, 266
PspN4I	GGNNCC	3 cut(s)	34, 35, 36
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	33, 34, 120
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	20, 69, 222
SatI	GCNGC	2 cut(s)	195, 265
Sau3AI	GATC	2 cut(s)	88, 101
Sau96I	GGNCC	3 cut(s)	33, 34, 120
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	4 cut(s)	11, 60, 99, 243
SfcI	CTRYAG	1 cut(s)	293
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	28, 174
TaaI	ACNGT	2 cut(s)	67, 297
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	20, 69, 222
Tru9I	TTAA	3 cut(s)	20, 69, 222
TseI	GCWGC	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	117
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.