Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Reverse (-)

61169568 .. 61191124

Gene Structure 21557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGATGACAATGCAAAGAATGAGCGATACCCACCCTCCTCTTGAGAGTGCGTACGGTGATGGTGATGAGGACGTCTGGCTTCTTATGGATTCAAAGACGGGGTTGGATGATCCAGGGACCGGTTCTTCTTCAGTGAGCTCAGGTCACTTTCCAAAGTTTGGGAAATGGTTCGATTATTCACCTTCGCAGATATCAAACTGTATTTCTGCACTCTTCGATCTTCAGCCAAACTGTTGGCTTCAAAGTTGGCTGAGAAGGGAAATCCAAGCTCTTAGCAGGATTGGTCTGGAAAAAGAATACATTGACGAGGTTTGGACTGTTAAGCCACTCTTGCCCACCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCCGACTTTGTGGACAAGAAGATACATGGTTTGGGGAGAAAAACATGGACAACTAAGGGAGACGAACAGGAGGCAGCAAAGAAGGAATACATTGACTGCATTAATTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCGAGACCCTCGGATTTGTTTTGCTTCTGCAGTTGTATGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

189

Amino Acids

21.46

Weight (kDa)

4.69

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccB7I	CCANNNNNTGG	2 cut(s)	161, 372
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	3 cut(s)	107, 338, 351
AcuI	CTGAAG	2 cut(s)	117, 209
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	4 cut(s)	122, 161, 372, 515
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	96, 245
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	3 cut(s)	141, 272, 496
AluI	AGCT	3 cut(s)	141, 272, 496
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	429, 518
AlwI	GGATC	3 cut(s)	107, 338, 351
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	449
AseI	ATTAAT	1 cut(s)	477
AsiGI	ACCGGT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	120, 375
AsuHPI	GGTGA	3 cut(s)	71, 77, 174
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	1 cut(s)	56
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	429, 518
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	2 cut(s)	450, 520
BlsI	GCNGC	2 cut(s)	451, 521
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	120, 375
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	116, 529
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 161, 372, 515
Bse118I	RCCGGY	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	116, 529
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	122, 161, 372, 515
BseMII	CTCAG	3 cut(s)	156, 245, 367
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	133, 515
BslI	CCNNNNNNNGG	4 cut(s)	122, 161, 372, 515
BsmAI	GTCTC	2 cut(s)	429, 518
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	133, 515
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	4 cut(s)	112, 220, 343, 356
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	155, 246, 366
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	552
BspPI	GGATC	3 cut(s)	107, 338, 351
BspTNI	GGTCTC	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	116, 529
BssMI	GATC	4 cut(s)	112, 220, 343, 356
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	4 cut(s)	59, 203, 236, 322
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	142, 254, 275, 353, 429
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	4 cut(s)	115, 223, 346, 359
BstMAI	GTCTC	2 cut(s)	429, 518
BstMBI	GATC	4 cut(s)	112, 220, 343, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	120, 375
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	2 cut(s)	401, 420
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	5 cut(s)	142, 254, 275, 353, 429
DpnI	GATC	4 cut(s)	114, 222, 345, 358
DpnII	GATC	4 cut(s)	112, 220, 343, 356
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	518
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	117, 209
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	2 cut(s)	404, 423
FaiI	YATR	4 cut(s)	89, 402, 421, 558
FalI	AAGNNNNNCTT	6 cut(s)	317, 349, 480, 512, 497, 529
FaqI	GGGAC	2 cut(s)	133, 515
FatI	CATG	2 cut(s)	400, 419
Fnu4HI	GCNGC	2 cut(s)	450, 520
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	450, 520
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	2 cut(s)	450, 520
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	404, 423
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	71, 77, 174
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	356, 533
Hpy188III	TCNNGA	2 cut(s)	44, 290
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	4 cut(s)	195, 252, 451, 519
HpyCH4III	ACNGT	4 cut(s)	59, 203, 236, 322
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	16, 212, 474, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	5 cut(s)	142, 254, 275, 353, 429
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	404, 423
Kzo9I	GATC	4 cut(s)	112, 220, 343, 356
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	9 cut(s)	64, 102, 129, 129, 136, 265, 275, 358, 428
Lsp1109I	GCAGC	1 cut(s)	461
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	4 cut(s)	114, 222, 345, 358
MboI	GATC	4 cut(s)	112, 220, 343, 356
MboII	GAAGA	5 cut(s)	120, 123, 208, 215, 406
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	48, 51, 64, 304, 362, 439, 539
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	324, 477
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	4 cut(s)	112, 220, 343, 356
NlaIII	CATG	2 cut(s)	404, 423
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	92
Pfl23II	CGTACG	1 cut(s)	54
PflMI	CCANNNNNTGG	2 cut(s)	161, 372
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	451, 521
PshBI	ATTAAT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	120, 375
PstI	CTGCAG	1 cut(s)	552
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	324, 477
SatI	GCNGC	2 cut(s)	450, 520
Sau3AI	GATC	4 cut(s)	112, 220, 343, 356
Sau96I	GGNCC	2 cut(s)	120, 375
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	8 cut(s)	78, 143, 148, 187, 274, 315, 354, 498
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	59, 203, 236, 322
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	174, 219
TasI	AATT	1 cut(s)	478
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	324, 477
Tru9I	TTAA	2 cut(s)	324, 477
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	2 cut(s)	161, 372
VpaK11BI	GGWCC	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	485
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.