Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Forward (+)

15423880 .. 15427003

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGATGTTTTAAGATTCCTTGGGGCCCCTCTTCAGTACATTGACAAGGTTTGGACTGTTAAGCCACTCTTGCCCTCCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCCGACTTTGTGGACAAGAAGATATATGGTTTGGGGAGTAAGACATGGACAACTAAGGGAGACGAACAGGAGGCAGCAAAGAAGGAATACATTGACTGCATTAAGTTGCTAGAAGTGGAGCTTGGGGACAAGCCTTCCTTTGGCGGCGAGACCCTCGGATTTTTTCTATACAGATTACAGTCCCAGCCAAGCCAAACAATTGAGAAAATATATGCTGACGCTCTTTCCTCAATCGGAAGCCAAATTACTTGGATCAAGAAGCTTCCACCAGCCAAAACATTTGAGCATCCCACAATTTTGGAGTTTTTAAGTGTTGCGAGAACTGCAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

8.91

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	74, 87, 371
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	108, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	232, 373
AluI	AGCT	2 cut(s)	232, 373
Alw26I	GTCTC	2 cut(s)	165, 254
AlwI	GGATC	3 cut(s)	74, 87, 371
AoxI	GGCC	2 cut(s)	24, 111
ApaI	GGGCCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	3 cut(s)	24, 25, 111
BaeGI	GKGCMC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
BbvI	GCAGC	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	165, 254
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	186, 256
BlsI	GCNGC	2 cut(s)	187, 257
BmgT120I	GGNCC	3 cut(s)	24, 25, 111
BmiI	GGNNCC	3 cut(s)	25, 26, 27
BmsI	GCATC	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	19, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 251
BseDI	CCNNGG	2 cut(s)	19, 265
BseGI	GGATG	2 cut(s)	10, 397
BseLI	CCNNNNNNNGG	2 cut(s)	108, 251
BseMII	CTCAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	2 cut(s)	26, 113
BslFI	GGGAC	2 cut(s)	251, 277
BslI	CCNNNNNNNGG	2 cut(s)	108, 251
BsmAI	GTCTC	2 cut(s)	165, 254
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	251, 277
BsnI	GGCC	2 cut(s)	26, 113
Bso31I	GGTCTC	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	79, 92, 363
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	26, 113
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	25, 26, 27
BspPI	GGATC	3 cut(s)	74, 87, 371
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	19, 265
BssMI	GATC	3 cut(s)	79, 92, 363
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	58, 291
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	89, 165
BstF5I	GGATG	2 cut(s)	10, 397
BstKTI	GATC	3 cut(s)	82, 95, 366
BstMAI	GTCTC	2 cut(s)	165, 254
BstMBI	GATC	3 cut(s)	79, 92, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 434
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	26, 113
BtsCI	GGATG	2 cut(s)	10, 397
Cfr13I	GGNCC	3 cut(s)	24, 25, 111
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	156
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	89, 165
DpnI	GATC	3 cut(s)	81, 94, 365
DpnII	GATC	3 cut(s)	79, 92, 363
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	24, 25
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	159
FaiI	YATR	6 cut(s)	136, 138, 157, 280, 322, 324
FalI	AAGNNNNNCTT	6 cut(s)	53, 85, 216, 248, 233, 265
FaqI	GGGAC	2 cut(s)	251, 277
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	186, 256
FokI	GGATG	2 cut(s)	17, 384
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	186, 256
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	186, 256
GsaI	CCCAGC	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	26, 113
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	79, 92, 269, 347
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	187, 255
HpyCH4III	ACNGT	2 cut(s)	58, 291
HpyCH4V	TGCA	2 cut(s)	210, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 434
HpyF3I	CTNAG	2 cut(s)	89, 165
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	79, 92, 363
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	94, 164, 308, 393
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	221
MalI	GATC	3 cut(s)	81, 94, 365
MboI	GATC	3 cut(s)	79, 92, 363
MboII	GAAGA	2 cut(s)	23, 142
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	309, 354, 405
MnlI	CCTC	7 cut(s)	39, 85, 98, 175, 275, 349, 435
MseI	TTAA	4 cut(s)	11, 60, 213, 419
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	70, 434
NdeII	GATC	3 cut(s)	79, 92, 363
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	3 cut(s)	25, 26, 27
PfeI	GAWTC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	187, 257
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	25, 26, 27
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	3 cut(s)	24, 25, 111
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	4 cut(s)	11, 60, 213, 419
SatI	GCNGC	2 cut(s)	186, 256
Sau3AI	GATC	3 cut(s)	79, 92, 363
Sau96I	GGNCC	3 cut(s)	24, 25, 111
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	5 cut(s)	51, 90, 234, 375, 446
SfaNI	GCATC	1 cut(s)	406
Sse9I	AATT	3 cut(s)	309, 354, 405
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	58, 291
TasI	AATT	3 cut(s)	309, 354, 405
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	4 cut(s)	11, 60, 213, 419
Tru9I	TTAA	4 cut(s)	11, 60, 213, 419
TseI	GCWGC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.