Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0013726

Physical Location & Seq

Genomic Coordinates Reverse (-)

156981 .. 160035

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgttcaaagcttcatatcgtggtcggaaagctaaactcgccgccgtgaacgcatacaaagaggcagagctcaatgaagggatcaattctgataccttacttgtcgccgttcactgtctgagtcgtcggaaaactcagaaaacccgccgagagcaccgaagcttccccgcttcaattctctctcctgccttatcatctggacaaaccaacaccatggataggttgcgacagctcgagaggaagcttctgacaccgaagatacgactgggatccacctcgcgccgactagatgaagcgaatcagactgatccgacttcaggaagtgaccggaaaattgagaaaggatggggtttcccttcgcgggaaaacgggtcagcgagtgtcggtttggaaaaccacttctcagacgaccgcaaagccaccatctttgctgcagaaccaaggttagtgcaattgaattttcagggtattgacgaaagaaagggagaacagaacggggaagaaggaagagaaggagaagagacagactggaagctcttgattaaaagaatacaagtggaagaagcaaagaaaagaaaagaagcagaaaagaagaagaagaaaaaggagaaggaaacgggaagaatttcactaaacactgacagcgaagtagaggtcgatagcaaggtttggatccggtttgggagggatctttcagcaggagaagagatacatggtttggggaggaagacatggacaactacgggagacgaacaggaggcagaaaagaaggaatacattgactgcattaagttgctagaagtggagcttggggacaagccttcctttggcggcgagaccctcagatttgttttgtttctgcagttgtatgaccaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

293

Amino Acids

33.36

Weight (kDa)

8.99

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013726)

Species	Orthologous Gene IDs
malus_domestica	MD10G1196500.v1.1
pyrus_communis	pycom04g12760 pycom06g19880
rosa_chinensis	RchiOBHm_Chr5g0046211
rosa_multiflora	Rmu_sc0001334.1_g000023 Rmu_sc0004463.1_g000002 Rmu_sc0006571.1_g000022 Rmu_sc0039330.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052110 Rroxscaffold_1G00064840 Rroxscaffold_4G00311490
rosa_samantha	Rh2DG175500 Rh2DG257800 Rh5AG537600 Rh7AG425600
rosa_wichuraiana	Rw2G013310 Rw5G006300 Rw5G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	280, 361
AciI	CCGC	6 cut(s)	42, 145, 168, 361, 412, 831
AclWI	GGATC	7 cut(s)	89, 264, 277, 302, 667, 680, 696
AcsI	RAATTY	2 cut(s)	457, 624
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	4 cut(s)	219, 317, 361, 827
AgsI	TTSAA	3 cut(s)	7, 174, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	8 cut(s)	11, 32, 70, 162, 232, 244, 535, 808
AluI	AGCT	8 cut(s)	11, 32, 70, 162, 232, 244, 535, 808
Alw21I	GWGCWC	2 cut(s)	72, 156
Alw26I	GTCTC	3 cut(s)	515, 741, 830
AlwI	GGATC	7 cut(s)	89, 264, 277, 302, 667, 680, 696
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	2 cut(s)	457, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	233
BamHI	GGATCC	2 cut(s)	269, 672
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	734
Bbv12I	GWGCWC	2 cut(s)	72, 156
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	339, 431
BceAI	ACGGC	2 cut(s)	29, 92
BcoDI	GTCTC	3 cut(s)	515, 741, 830
BfaI	CTAG	2 cut(s)	287, 797
BfmI	CTRYAG	2 cut(s)	432, 860
BisI	GCNGC	3 cut(s)	42, 432, 832
BlsI	GCNGC	3 cut(s)	43, 433, 833
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	271, 674
BmrI	ACTGGG	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	734
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	213, 440
BsaWI	WCCGGW	2 cut(s)	327, 675
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 317, 361, 827
Bse1I	ACTGG	2 cut(s)	270, 533
BseDI	CCNNGG	2 cut(s)	213, 440
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	4 cut(s)	219, 317, 361, 827
BseMII	CTCAG	4 cut(s)	110, 149, 417, 856
BseNI	ACTGG	2 cut(s)	270, 533
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	280, 361
Bsh1285I	CGRYCG	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	72, 156
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	328, 676
BslFI	GGGAC	1 cut(s)	827
BslI	CCNNNNNNNGG	4 cut(s)	219, 317, 361, 827
BsmAI	GTCTC	3 cut(s)	515, 741, 830
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	827
Bso31I	GGTCTC	1 cut(s)	830
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	72, 156
Bsp143I	GATC	5 cut(s)	81, 269, 307, 672, 688
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	6 cut(s)	42, 145, 168, 361, 412, 831
BspCNI	CTCAG	4 cut(s)	111, 148, 416, 855
BspFNI	CGCG	2 cut(s)	280, 361
BspLI	GGNNCC	2 cut(s)	271, 674
BspMAI	CTGCAG	2 cut(s)	436, 864
BspPI	GGATC	7 cut(s)	89, 264, 277, 302, 667, 680, 696
BspTNI	GGTCTC	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	270, 533
BssECI	CCNNGG	2 cut(s)	213, 440
BssMI	GATC	5 cut(s)	81, 269, 307, 672, 688
BssT1I	CCWWGG	2 cut(s)	213, 440
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	502, 513, 699
BstDEI	CTNAG	4 cut(s)	119, 135, 403, 842
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	280, 361
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	5 cut(s)	84, 272, 310, 675, 691
BstMAI	GTCTC	3 cut(s)	515, 741, 830
BstMBI	GATC	5 cut(s)	81, 269, 307, 672, 688
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 50
BstSFI	CTRYAG	2 cut(s)	432, 860
BstUI	CGCG	2 cut(s)	280, 361
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	3 cut(s)	269, 672, 688
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	3 cut(s)	269, 672, 688
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	112, 636
CfoI	GCGC	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	3 cut(s)	214, 713, 732
DdeI	CTNAG	4 cut(s)	119, 135, 403, 842
DpnI	GATC	5 cut(s)	83, 271, 309, 674, 690
DpnII	GATC	5 cut(s)	81, 269, 307, 672, 688
Eam1104I	CTCTTC	3 cut(s)	502, 513, 699
EarI	CTCTTC	3 cut(s)	502, 513, 699
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	213, 440
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	213, 440
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	213, 440
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	3 cut(s)	217, 716, 735
FaiI	YATR	6 cut(s)	16, 55, 215, 714, 733, 870
FalI	AAGNNNNNCTT	4 cut(s)	792, 824, 809, 841
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	3 cut(s)	213, 712, 731
FauI	CCCGC	3 cut(s)	152, 175, 354
Fnu4HI	GCNGC	3 cut(s)	42, 432, 832
FokI	GGATG	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	42, 432, 832
FspBI	CTAG	2 cut(s)	287, 797
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	3 cut(s)	42, 432, 832
HapII	CCGG	2 cut(s)	328, 676
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	217, 716, 735
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	3 cut(s)	9, 160, 242
HinfI	GANTC	2 cut(s)	121, 298
HpaII	CCGG	2 cut(s)	328, 676
Hpy166II	GTNNAC	2 cut(s)	49, 112
Hpy188III	TCNNGA	4 cut(s)	198, 235, 318, 538
Hpy8I	GTNNAC	2 cut(s)	49, 112
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	7 cut(s)	71, 366, 497, 506, 604, 763, 831
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	434, 451, 786, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 50
HpyF3I	CTNAG	4 cut(s)	119, 135, 403, 842
Hsp92II	CATG	3 cut(s)	217, 716, 735
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	81, 269, 307, 672, 688
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	287, 797
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	5 cut(s)	83, 271, 309, 674, 690
MboI	GATC	5 cut(s)	81, 269, 307, 672, 688
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	3 cut(s)	269, 672, 688
MhlI	GDGCHC	2 cut(s)	72, 156
MluCI	AATT	6 cut(s)	85, 174, 333, 452, 457, 624
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	3 cut(s)	5, 107, 335
MnlI	CCTC	8 cut(s)	55, 231, 286, 646, 678, 717, 751, 851
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	543, 789
MspI	CCGG	2 cut(s)	328, 676
MunI	CAATTG	1 cut(s)	452
MvnI	CGCG	2 cut(s)	280, 361
MwoI	GCNNNNNNNGC	2 cut(s)	38, 50
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	5 cut(s)	81, 269, 307, 672, 688
NlaIII	CATG	3 cut(s)	217, 716, 735
NlaIV	GGNNCC	2 cut(s)	271, 674
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	43, 433, 833
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	271, 674
PstI	CTGCAG	2 cut(s)	436, 864
PsuI	RGATCY	3 cut(s)	269, 672, 688
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	543, 789
SatI	GCNGC	3 cut(s)	42, 432, 832
Sau3AI	GATC	5 cut(s)	81, 269, 307, 672, 688
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	72, 156
SfcI	CTRYAG	2 cut(s)	432, 860
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	6 cut(s)	85, 174, 333, 452, 457, 624
SsiI	CCGC	6 cut(s)	42, 145, 168, 361, 412, 831
SspMI	CTAG	2 cut(s)	287, 797
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	2 cut(s)	213, 440
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	234, 657
TasI	AATT	6 cut(s)	85, 174, 333, 452, 457, 624
TauI	GCSGC	2 cut(s)	44, 834
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	543, 789
Tru9I	TTAA	2 cut(s)	543, 789
TscAI	CASTG	2 cut(s)	119, 643
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	90, 306
TspRI	CASTG	2 cut(s)	119, 643
XapI	RAATTY	2 cut(s)	457, 624
XhoI	CTCGAG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	2 cut(s)	287, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.